RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 PPP1R15AO75807 674 aaPredicted RBP12.03□□□□□ -0.48
CSMD1-213ENST00000523488 BCANQ96GW7 911 aa12.02□□□□□ -0.49
CSMD1-213ENST00000523488 GCC2Q8IWJ2 1684 aa11.97□□□□□ -0.49
CSMD1-213ENST00000523488 HECW1Q76N89 1606 aa11.95□□□□□ -0.5
CSMD1-213ENST00000523488 ARHGAP35Q9NRY4 1499 aa11.93□□□□□ -0.5
CSMD1-213ENST00000523488 NEFLP07196 543 aa11.93□□□□□ -0.5
CSMD1-213ENST00000523488 KIF21AQ7Z4S6 1674 aa11.92□□□□□ -0.5
CSMD1-213ENST00000523488 AQRO60306 1485 aaKnown RBP eCLIP11.91□□□□□ -0.5
CSMD1-213ENST00000523488 CCNB3Q8WWL7 1395 aa11.89□□□□□ -0.51
CSMD1-213ENST00000523488 LRRIQ1Q96JM4 1722 aa11.89□□□□□ -0.51
CSMD1-213ENST00000523488 FKBP8Q14318 412 aa11.88□□□□□ -0.51
CSMD1-213ENST00000523488 FHAD1B1AJZ9 1412 aa11.88□□□□□ -0.51
CSMD1-213ENST00000523488 HNRNPUL2Q1KMD3 747 aaKnown RBP11.88□□□□□ -0.51
CSMD1-213ENST00000523488 HMGXB3Q12766 1538 aa11.87□□□□□ -0.51
CSMD1-213ENST00000523488 RNF123Q5XPI4 1314 aa11.87□□□□□ -0.51
CSMD1-213ENST00000523488 ARHGEF11O15085 1522 aa11.86□□□□□ -0.51
CSMD1-213ENST00000523488 THOC2Q8NI27 1593 aaKnown RBP11.86□□□□□ -0.51
CSMD1-213ENST00000523488 LRRC9Q6ZRR7 1453 aa11.85□□□□□ -0.51
CSMD1-213ENST00000523488 WASHC2AQ641Q2 1341 aa11.84□□□□□ -0.51
CSMD1-213ENST00000523488 C11orf95C9JLR9 678 aaPredicted RBP11.84□□□□□ -0.51
CSMD1-213ENST00000523488 PTPN23Q9H3S7 1636 aa11.84□□□□□ -0.51
CSMD1-213ENST00000523488 VIRMAQ69YN4 1812 aaKnown RBP11.83□□□□□ -0.51
CSMD1-213ENST00000523488 SETD5Q9C0A6 1442 aa11.83□□□□□ -0.52
CSMD1-213ENST00000523488 E9PCH4 1651 aa11.83□□□□□ -0.52
CSMD1-213ENST00000523488 RAB3GAP2Q9H2M9 1393 aa11.83□□□□□ -0.52
CSMD1-213ENST00000523488 CUX1P39880 1505 aa11.82□□□□□ -0.52
CSMD1-213ENST00000523488 RANGAP1P46060 587 aaPredicted RBP11.82□□□□□ -0.52
CSMD1-213ENST00000523488 CTTNBP2Q8WZ74 1663 aa11.81□□□□□ -0.52
CSMD1-213ENST00000523488 EFCAB5A4FU69 1503 aa11.8□□□□□ -0.52
CSMD1-213ENST00000523488 ATAD2BQ9ULI0 1458 aa11.8□□□□□ -0.52
CSMD1-213ENST00000523488 UBE2Q2Q8WVN8 375 aa11.8□□□□□ -0.52
CSMD1-213ENST00000523488 AKNAQ7Z591 1439 aa11.8□□□□□ -0.52
CSMD1-213ENST00000523488 PCF11O94913 1555 aaKnown RBP11.8□□□□□ -0.52
CSMD1-213ENST00000523488 KCNH8Q96L42 1107 aa11.78□□□□□ -0.52
CSMD1-213ENST00000523488 DENND4BO75064 1496 aaPredicted RBP11.78□□□□□ -0.52
CSMD1-213ENST00000523488 WASHC2CQ9Y4E1 1318 aa11.78□□□□□ -0.52
CSMD1-213ENST00000523488 FYCO1Q9BQS8 1478 aa11.77□□□□□ -0.52
CSMD1-213ENST00000523488 ITGAEP38570 1179 aa11.77□□□□□ -0.53
CSMD1-213ENST00000523488 SAMD9Q5K651 1589 aa11.76□□□□□ -0.53
CSMD1-213ENST00000523488 ZMYM4Q5VZL5 1548 aa11.76□□□□□ -0.53
CSMD1-213ENST00000523488 DEKP35659 375 aaKnown RBP11.75□□□□□ -0.53
CSMD1-213ENST00000523488 ANO8Q9HCE9 1232 aaPredicted RBP11.74□□□□□ -0.53
CSMD1-213ENST00000523488 HFM1A2PYH4 1435 aa11.73□□□□□ -0.53
CSMD1-213ENST00000523488 CC2D2AQ9P2K1 1620 aa11.73□□□□□ -0.53
CSMD1-213ENST00000523488 TCOF1Q13428 1488 aaKnown RBP11.73□□□□□ -0.53
CSMD1-213ENST00000523488 CCDC18Q5T9S5 1454 aa11.73□□□□□ -0.53
CSMD1-213ENST00000523488 CDK11AQ9UQ88 783 aaPredicted RBP11.71□□□□□ -0.53
CSMD1-213ENST00000523488 UBTFP17480 764 aaKnown RBP11.71□□□□□ -0.53
CSMD1-213ENST00000523488 UACAQ9BZF9 1416 aa11.71□□□□□ -0.54
CSMD1-213ENST00000523488 SMG6Q86US8 1419 aaKnown RBP11.7□□□□□ -0.54
CSMD1-213ENST00000523488 SNAPC4Q5SXM2 1469 aa11.7□□□□□ -0.54
CSMD1-213ENST00000523488 CUL7Q14999 1698 aa11.69□□□□□ -0.54
CSMD1-213ENST00000523488 NCOA1Q15788 1441 aa11.69□□□□□ -0.54
CSMD1-213ENST00000523488 KANK4Q5T7N3 995 aaPredicted RBP11.69□□□□□ -0.54
CSMD1-213ENST00000523488 SPATA31E1Q6ZUB1 1445 aa11.68□□□□□ -0.54
CSMD1-213ENST00000523488 PABPN1Q86U42 306 aaKnown RBP eCLIP11.68□□□□□ -0.54
CSMD1-213ENST00000523488 CNTLNQ9NXG0 1405 aa11.67□□□□□ -0.54
CSMD1-213ENST00000523488 FGD5Q6ZNL6 1462 aa11.67□□□□□ -0.54
CSMD1-213ENST00000523488 MBD5Q9P267 1494 aa11.67□□□□□ -0.54
CSMD1-213ENST00000523488 PPP4R2Q9NY27 417 aa11.66□□□□□ -0.54
CSMD1-213ENST00000523488 PHLDB1Q86UU1 1377 aa11.66□□□□□ -0.54
CSMD1-213ENST00000523488 CFTRP13569 1480 aa11.65□□□□□ -0.54
CSMD1-213ENST00000523488 INSRP06213 1382 aa11.65□□□□□ -0.55
CSMD1-213ENST00000523488 CASKIN1Q8WXD9 1431 aa11.64□□□□□ -0.55
CSMD1-213ENST00000523488 USP35Q9P2H5 1018 aa11.62□□□□□ -0.55
CSMD1-213ENST00000523488 ZBED9Q6R2W3 1325 aa11.62□□□□□ -0.55
CSMD1-213ENST00000523488 KIF27Q86VH2 1401 aa11.62□□□□□ -0.55
CSMD1-213ENST00000523488 NBR1Q14596 966 aa11.62□□□□□ -0.55
CSMD1-213ENST00000523488 UGGT2Q9NYU1 1516 aa11.62□□□□□ -0.55
CSMD1-213ENST00000523488 RTL5Q5HYW3 569 aaPredicted RBP11.61□□□□□ -0.55
CSMD1-213ENST00000523488 TEX14Q8IWB6 1497 aa11.61□□□□□ -0.55
CSMD1-213ENST00000523488 SUPT6HQ7KZ85 1726 aaKnown RBP11.61□□□□□ -0.55
CSMD1-213ENST00000523488 KIF14Q15058 1648 aa11.6□□□□□ -0.55
CSMD1-213ENST00000523488 CCDC136Q96JN2 1154 aa11.6□□□□□ -0.55
CSMD1-213ENST00000523488 SALL2Q9Y467 1007 aaPredicted RBP11.59□□□□□ -0.55
CSMD1-213ENST00000523488 NOP58Q9Y2X3 529 aaKnown RBP11.59□□□□□ -0.55
CSMD1-213ENST00000523488 GAPVD1Q14C86 1478 aa11.59□□□□□ -0.55
CSMD1-213ENST00000523488 TRIM52Q96A61 297 aa11.58□□□□□ -0.56
CSMD1-213ENST00000523488 KDM5CP41229 1560 aa11.58□□□□□ -0.56
CSMD1-213ENST00000523488 BCORL1Q5H9F3 1711 aa11.58□□□□□ -0.56
CSMD1-213ENST00000523488 NAIPQ13075 1403 aa11.58□□□□□ -0.56
CSMD1-213ENST00000523488 LAMC1P11047 1609 aa11.57□□□□□ -0.56
CSMD1-213ENST00000523488 EHBP1L1Q8N3D4 1523 aa11.57□□□□□ -0.56
CSMD1-213ENST00000523488 GRIN2BQ13224 1484 aa11.56□□□□□ -0.56
CSMD1-213ENST00000523488 CROCC2H7BZ55 1655 aa11.56□□□□□ -0.56
CSMD1-213ENST00000523488 FGD6Q6ZV73 1430 aa11.56□□□□□ -0.56
CSMD1-213ENST00000523488 PTPRKQ15262 1439 aa11.55□□□□□ -0.56
CSMD1-213ENST00000523488 MYOM3Q5VTT5 1437 aa11.55□□□□□ -0.56
CSMD1-213ENST00000523488 RTN4Q9NQC3 1192 aaKnown RBP11.54□□□□□ -0.56
CSMD1-213ENST00000523488 MIA2Q96PC5 1412 aa11.54□□□□□ -0.56
CSMD1-213ENST00000523488 KDM6BO15054 1643 aa11.53□□□□□ -0.56
CSMD1-213ENST00000523488 IPO9Q96P70 1041 aaKnown RBP11.53□□□□□ -0.56
CSMD1-213ENST00000523488 ADGBQ8N7X0 1667 aa11.53□□□□□ -0.56
CSMD1-213ENST00000523488 DDX10Q13206 875 aaKnown RBP11.52□□□□□ -0.56
CSMD1-213ENST00000523488 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.52□□□□□ -0.57
CSMD1-213ENST00000523488 LRPPRCP42704 1394 aaKnown RBP11.51□□□□□ -0.57
CSMD1-213ENST00000523488 DHX29Q7Z478 1369 aaKnown RBP11.51□□□□□ -0.57
CSMD1-213ENST00000523488 IRX6P78412 446 aaPredicted RBP11.51□□□□□ -0.57
CSMD1-213ENST00000523488 CCDC144AA2RUR9 1427 aa11.51□□□□□ -0.57
CSMD1-213ENST00000523488 PAK3O75914 559 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 162.6 ms