RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 ANP32EQ9BTT0 268 aa18.73■□□□□ 0.59
SYNPO-205ENST00000522122 KANK4Q5T7N3 995 aaPredicted RBP18.73■□□□□ 0.59
SYNPO-205ENST00000522122 NPM2Q86SE8 214 aaKnown RBP18.73■□□□□ 0.59
SYNPO-205ENST00000522122 SETD5Q9C0A6 1442 aa18.72■□□□□ 0.59
SYNPO-205ENST00000522122 DHX57Q6P158 1386 aaKnown RBP18.71■□□□□ 0.59
SYNPO-205ENST00000522122 TIMELESSQ9UNS1 1208 aa18.7■□□□□ 0.58
SYNPO-205ENST00000522122 ATAD2BQ9ULI0 1458 aa18.69■□□□□ 0.58
SYNPO-205ENST00000522122 NEFMP07197 916 aa18.69■□□□□ 0.58
SYNPO-205ENST00000522122 HIRIP3Q9BW71 556 aaPredicted RBP18.66■□□□□ 0.58
SYNPO-205ENST00000522122 CUX2O14529 1486 aa18.66■□□□□ 0.58
SYNPO-205ENST00000522122 TMC1Q8TDI8 760 aa18.66■□□□□ 0.58
SYNPO-205ENST00000522122 MRS2Q9HD23 443 aa18.65■□□□□ 0.58
SYNPO-205ENST00000522122 RAB3GAP2Q9H2M9 1393 aa18.64■□□□□ 0.58
SYNPO-205ENST00000522122 SIN3AQ96ST3 1273 aa18.64■□□□□ 0.57
SYNPO-205ENST00000522122 CCDC136Q96JN2 1154 aa18.63■□□□□ 0.57
SYNPO-205ENST00000522122 CARMIL1Q5VZK9 1371 aa18.63■□□□□ 0.57
SYNPO-205ENST00000522122 CCER2I3L3R5 266 aa18.62■□□□□ 0.57
SYNPO-205ENST00000522122 SALL2Q9Y467 1007 aaPredicted RBP18.61■□□□□ 0.57
SYNPO-205ENST00000522122 BCL11AQ9H165 835 aa18.61■□□□□ 0.57
SYNPO-205ENST00000522122 ARHGAP35Q9NRY4 1499 aa18.6■□□□□ 0.57
SYNPO-205ENST00000522122 EIF4G2P78344 907 aaKnown RBP eCLIP18.58■□□□□ 0.57
SYNPO-205ENST00000522122 SYNJ1O43426 1573 aa18.58■□□□□ 0.56
SYNPO-205ENST00000522122 TSPY4P0CV99 314 aa18.55■□□□□ 0.56
SYNPO-205ENST00000522122 TSPY10P0CW01 314 aa18.55■□□□□ 0.56
SYNPO-205ENST00000522122 IRX6P78412 446 aaPredicted RBP18.53■□□□□ 0.56
SYNPO-205ENST00000522122 ERICH3Q5RHP9 1530 aa18.53■□□□□ 0.56
SYNPO-205ENST00000522122 RRP7BPQ9NSQ0 103 aa18.52■□□□□ 0.56
SYNPO-205ENST00000522122 KDM2AQ9Y2K7 1162 aa18.51■□□□□ 0.55
SYNPO-205ENST00000522122 TSHZ2Q9NRE2 1034 aa18.5■□□□□ 0.55
SYNPO-205ENST00000522122 CHGAP10645 457 aaKnown RBP18.5■□□□□ 0.55
SYNPO-205ENST00000522122 SLC24A1O60721 1099 aa18.5■□□□□ 0.55
SYNPO-205ENST00000522122 EIF4G1Q04637 1599 aaKnown RBP18.49■□□□□ 0.55
SYNPO-205ENST00000522122 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.49■□□□□ 0.55
SYNPO-205ENST00000522122 UPF2Q9HAU5 1272 aaKnown RBP18.47■□□□□ 0.55
SYNPO-205ENST00000522122 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.47■□□□□ 0.55
SYNPO-205ENST00000522122 WDR43Q15061 677 aaKnown RBP eCLIP18.43■□□□□ 0.54
SYNPO-205ENST00000522122 NBR1Q14596 966 aa18.43■□□□□ 0.54
SYNPO-205ENST00000522122 RRBP1Q9P2E9 1410 aaKnown RBP18.43■□□□□ 0.54
SYNPO-205ENST00000522122 TOP2BQ02880 1626 aa18.42■□□□□ 0.54
SYNPO-205ENST00000522122 PPP4R2Q9NY27 417 aa18.41■□□□□ 0.54
SYNPO-205ENST00000522122 ARAP1Q96P48 1450 aa18.41■□□□□ 0.54
SYNPO-205ENST00000522122 FMN1Q68DA7 1419 aa18.4■□□□□ 0.54
SYNPO-205ENST00000522122 PPP1R15AO75807 674 aaPredicted RBP18.39■□□□□ 0.53
SYNPO-205ENST00000522122 HSP90AA1P07900 732 aaKnown RBP18.39■□□□□ 0.53
SYNPO-205ENST00000522122 RBM19Q9Y4C8 960 aaKnown RBP18.38■□□□□ 0.53
SYNPO-205ENST00000522122 CHMP7Q8WUX9 453 aaPredicted RBP18.37■□□□□ 0.53
SYNPO-205ENST00000522122 STAG3Q9UJ98 1225 aa18.34■□□□□ 0.53
SYNPO-205ENST00000522122 PRXQ9BXM0 1461 aa18.33■□□□□ 0.52
SYNPO-205ENST00000522122 EIF5BO60841 1220 aaKnown RBP18.33■□□□□ 0.52
SYNPO-205ENST00000522122 ERICH6BQ5W0A0 696 aa18.33■□□□□ 0.52
SYNPO-205ENST00000522122 ANP32BQ92688 251 aaKnown RBP18.32■□□□□ 0.52
SYNPO-205ENST00000522122 FHOD3Q2V2M9 1422 aa18.32■□□□□ 0.52
SYNPO-205ENST00000522122 NPM1P06748 294 aaKnown RBP eCLIP18.32■□□□□ 0.52
SYNPO-205ENST00000522122 HSPA5P11021 654 aaKnown RBP18.3■□□□□ 0.52
SYNPO-205ENST00000522122 ESF1Q9H501 851 aaKnown RBP18.3■□□□□ 0.52
SYNPO-205ENST00000522122 CADPSQ9ULU8 1353 aa18.29■□□□□ 0.52
SYNPO-205ENST00000522122 PLEKHD1A6NEE1 506 aa18.29■□□□□ 0.52
SYNPO-205ENST00000522122 KCNH8Q96L42 1107 aa18.29■□□□□ 0.52
SYNPO-205ENST00000522122 LRRC9Q6ZRR7 1453 aa18.28■□□□□ 0.52
SYNPO-205ENST00000522122 CFDP1Q9UEE9 299 aaPredicted RBP18.25■□□□□ 0.51
SYNPO-205ENST00000522122 PEG3Q9GZU2 1588 aa18.25■□□□□ 0.51
SYNPO-205ENST00000522122 RGL3Q3MIN7 710 aa18.24■□□□□ 0.51
SYNPO-205ENST00000522122 IGF1RP08069 1367 aa18.24■□□□□ 0.51
SYNPO-205ENST00000522122 CCDC18Q5T9S5 1454 aa18.23■□□□□ 0.51
SYNPO-205ENST00000522122 NCAPD3P42695 1498 aa18.23■□□□□ 0.51
SYNPO-205ENST00000522122 CARD11Q9BXL7 1154 aa18.21■□□□□ 0.51
SYNPO-205ENST00000522122 PHLDB1Q86UU1 1377 aa18.2■□□□□ 0.5
SYNPO-205ENST00000522122 SENP3-EIF4A1A0A087X0R7 540 aa18.2■□□□□ 0.5
SYNPO-205ENST00000522122 FGD5Q6ZNL6 1462 aa18.19■□□□□ 0.5
SYNPO-205ENST00000522122 TIAM1Q13009 1591 aa18.19■□□□□ 0.5
SYNPO-205ENST00000522122 CUX1P39880 1505 aa18.19■□□□□ 0.5
SYNPO-205ENST00000522122 NOP58Q9Y2X3 529 aaKnown RBP18.18■□□□□ 0.5
SYNPO-205ENST00000522122 DDRGK1Q96HY6 314 aa18.18■□□□□ 0.5
SYNPO-205ENST00000522122 HMGXB3Q12766 1538 aa18.16■□□□□ 0.5
SYNPO-205ENST00000522122 B4GALNT3Q6L9W6 998 aa18.16■□□□□ 0.5
SYNPO-205ENST00000522122 UNC13AQ9UPW8 1703 aa18.14■□□□□ 0.5
SYNPO-205ENST00000522122 BICRAQ9NZM4 1560 aa18.14■□□□□ 0.49
SYNPO-205ENST00000522122 CFTRP13569 1480 aa18.14■□□□□ 0.49
SYNPO-205ENST00000522122 CDCA8Q53HL2 280 aa18.14■□□□□ 0.49
SYNPO-205ENST00000522122 MPHOSPH9Q99550 1183 aa18.14■□□□□ 0.49
SYNPO-205ENST00000522122 FGD6Q6ZV73 1430 aa18.14■□□□□ 0.49
SYNPO-205ENST00000522122 BIVM-ERCC5R4GMW8 1640 aa18.14■□□□□ 0.49
SYNPO-205ENST00000522122 KNSTRNQ9Y448 316 aa18.14■□□□□ 0.49
SYNPO-205ENST00000522122 FYCO1Q9BQS8 1478 aa18.13■□□□□ 0.49
SYNPO-205ENST00000522122 ARXQ96QS3 562 aa18.12■□□□□ 0.49
SYNPO-205ENST00000522122 FANCD2Q9BXW9 1451 aa18.12■□□□□ 0.49
SYNPO-205ENST00000522122 CASKIN1Q8WXD9 1431 aa18.12■□□□□ 0.49
SYNPO-205ENST00000522122 UACAQ9BZF9 1416 aa18.11■□□□□ 0.49
SYNPO-205ENST00000522122 BECN1Q14457 450 aa18.1■□□□□ 0.49
SYNPO-205ENST00000522122 EFCAB5A4FU69 1503 aa18.09■□□□□ 0.49
SYNPO-205ENST00000522122 MYH16Q9H6N6 1097 aa18.07■□□□□ 0.48
SYNPO-205ENST00000522122 MAP3K1Q13233 1512 aa18.07■□□□□ 0.48
SYNPO-205ENST00000522122 MYOM3Q5VTT5 1437 aa18.05■□□□□ 0.48
SYNPO-205ENST00000522122 TDRD9Q8NDG6 1382 aaKnown RBP18.05■□□□□ 0.48
SYNPO-205ENST00000522122 CFAP53Q96M91 514 aa18.04■□□□□ 0.48
SYNPO-205ENST00000522122 L3MBTL2Q969R5 705 aa18.04■□□□□ 0.48
SYNPO-205ENST00000522122 WDR97A6NE52 1622 aa18.04■□□□□ 0.48
SYNPO-205ENST00000522122 PDS5BQ9NTI5 1447 aa18.04■□□□□ 0.48
SYNPO-205ENST00000522122 PPM1GO15355 546 aaPredicted RBP18.03■□□□□ 0.48
SYNPO-205ENST00000522122 FOXD1Q16676 465 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms