RNA–Protein interactions for RNA: ENST00000521253.1

TRIM35-203, Transcript of tripartite motif containing 35, humanhuman

TSL 1 (best) BASIC

Gene TRIM35, Length 1,215 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35-203ENST00000521253 JPH4Q96JJ6 628 aa34.93■■■■□ 3.18
TRIM35-203ENST00000521253 KIAA0586Q9BVV6 1533 aa34.9■■■■□ 3.18
TRIM35-203ENST00000521253 PRG4Q92954 1404 aaPredicted RBP34.87■■■■□ 3.17
TRIM35-203ENST00000521253 RAPGEF2Q9Y4G8 1499 aa34.85■■■■□ 3.17
TRIM35-203ENST00000521253 CHIC1Q5VXU3 224 aa34.75■■■■□ 3.15
TRIM35-203ENST00000521253 PRXQ9BXM0 1461 aa34.71■■■■□ 3.15
TRIM35-203ENST00000521253 IQGAP2Q13576 1575 aa34.66■■■■□ 3.14
TRIM35-203ENST00000521253 CSRNP3Q8WYN3 585 aa34.65■■■■□ 3.14
TRIM35-203ENST00000521253 EEA1Q15075 1411 aa34.63■■■■□ 3.13
TRIM35-203ENST00000521253 FAM9AQ8IZU1 332 aaPredicted RBP34.53■■■■□ 3.12
TRIM35-203ENST00000521253 CARMIL2Q6F5E8 1435 aa34.52■■■■□ 3.12
TRIM35-203ENST00000521253 UGGT2Q9NYU1 1516 aa34.48■■■■□ 3.11
TRIM35-203ENST00000521253 TRHP20396 242 aaPredicted RBP34.47■■■■□ 3.11
TRIM35-203ENST00000521253 DISP1Q96F81 1524 aa34.46■■■■□ 3.11
TRIM35-203ENST00000521253 TNIKQ9UKE5 1360 aa34.44■■■■□ 3.1
TRIM35-203ENST00000521253 PTPRGP23470 1445 aa34.44■■■■□ 3.1
TRIM35-203ENST00000521253 CTTNBP2Q8WZ74 1663 aa34.44■■■■□ 3.1
TRIM35-203ENST00000521253 TTBK1Q5TCY1 1321 aaPredicted RBP34.4■■■■□ 3.1
TRIM35-203ENST00000521253 KIAA0556O60303 1618 aa34.33■■■■□ 3.09
TRIM35-203ENST00000521253 ADCY10Q96PN6 1610 aa34.33■■■■□ 3.09
TRIM35-203ENST00000521253 GOLGA3Q08378 1498 aa34.27■■■■□ 3.08
TRIM35-203ENST00000521253 NPM1P06748 294 aaKnown RBP eCLIP34.26■■■■□ 3.08
TRIM35-203ENST00000521253 KIF21BO75037 1637 aa34.26■■■■□ 3.07
TRIM35-203ENST00000521253 UACAQ9BZF9 1416 aa34.2■■■■□ 3.06
TRIM35-203ENST00000521253 UHRF1BP1LA0JNW5 1464 aa34.16■■■■□ 3.06
TRIM35-203ENST00000521253 MAPKBP1O60336 1514 aa34.14■■■■□ 3.06
TRIM35-203ENST00000521253 ABCC2Q92887 1545 aa34.14■■■■□ 3.06
TRIM35-203ENST00000521253 EHMT2Q96KQ7 1210 aa34.11■■■■□ 3.05
TRIM35-203ENST00000521253 P3H3Q8IVL6 736 aa34.09■■■■□ 3.05
TRIM35-203ENST00000521253 RANGAP1P46060 587 aaPredicted RBP34.06■■■■□ 3.04
TRIM35-203ENST00000521253 PLB1Q6P1J6 1458 aa34.06■■■■□ 3.04
TRIM35-203ENST00000521253 SAMD9Q5K651 1589 aa34.06■■■■□ 3.04
TRIM35-203ENST00000521253 ABCC10Q5T3U5 1492 aa34.03■■■■□ 3.04
TRIM35-203ENST00000521253 UBTFP17480 764 aaKnown RBP34.03■■■■□ 3.04
TRIM35-203ENST00000521253 KDM5BQ9UGL1 1544 aa34■■■■□ 3.03
TRIM35-203ENST00000521253 FAM69CQ0P6D2 419 aa33.98■■■■□ 3.03
TRIM35-203ENST00000521253 ABCA8O94911 1581 aa33.98■■■■□ 3.03
TRIM35-203ENST00000521253 KIF13AQ9H1H9 1805 aa33.97■■■■□ 3.03
TRIM35-203ENST00000521253 ASXL2Q76L83 1435 aa33.95■■■■□ 3.02
TRIM35-203ENST00000521253 DIP2BQ9P265 1576 aa33.94■■■■□ 3.02
TRIM35-203ENST00000521253 FHOD3Q2V2M9 1422 aa33.9■■■■□ 3.02
TRIM35-203ENST00000521253 ZCCHC11Q5TAX3 1644 aaKnown RBP33.9■■■■□ 3.02
TRIM35-203ENST00000521253 EFCAB5A4FU69 1503 aa33.88■■■■□ 3.01
TRIM35-203ENST00000521253 ARID3CA6NKF2 412 aa33.76■■■□□ 2.99
TRIM35-203ENST00000521253 RAPGEF6Q8TEU7 1601 aa33.75■■■□□ 2.99
TRIM35-203ENST00000521253 EPRSP07814 1512 aaKnown RBP33.74■■■□□ 2.99
TRIM35-203ENST00000521253 WDR7Q9Y4E6 1490 aa33.74■■■□□ 2.99
TRIM35-203ENST00000521253 ARHGAP35Q9NRY4 1499 aa33.73■■■□□ 2.99
TRIM35-203ENST00000521253 GLI2P10070 1586 aa33.72■■■□□ 2.99
TRIM35-203ENST00000521253 ATP10BO94823 1461 aa33.72■■■□□ 2.99
TRIM35-203ENST00000521253 NUP153P49790 1475 aaKnown RBP33.68■■■□□ 2.98
TRIM35-203ENST00000521253 KCNH8Q96L42 1107 aa33.61■■■□□ 2.97
TRIM35-203ENST00000521253 TSPOAP1O95153 1857 aa33.61■■■□□ 2.97
TRIM35-203ENST00000521253 FMN1Q68DA7 1419 aa33.59■■■□□ 2.97
TRIM35-203ENST00000521253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.58■■■□□ 2.97
TRIM35-203ENST00000521253 HNRNPUL2Q1KMD3 747 aaKnown RBP33.58■■■□□ 2.97
TRIM35-203ENST00000521253 MAP3K4Q9Y6R4 1608 aa33.55■■■□□ 2.96
TRIM35-203ENST00000521253 PPRC1Q5VV67 1664 aaKnown RBP33.52■■■□□ 2.96
TRIM35-203ENST00000521253 CLIP1P30622 1438 aa33.48■■■□□ 2.95
TRIM35-203ENST00000521253 CD109Q6YHK3 1445 aa33.45■■■□□ 2.95
TRIM35-203ENST00000521253 ATP1B4Q9UN42 357 aaPredicted RBP33.45■■■□□ 2.95
TRIM35-203ENST00000521253 TEX14Q8IWB6 1497 aa33.43■■■□□ 2.94
TRIM35-203ENST00000521253 KDM6BO15054 1643 aa33.42■■■□□ 2.94
TRIM35-203ENST00000521253 PLEKHD1A6NEE1 506 aa33.42■■■□□ 2.94
TRIM35-203ENST00000521253 CDK13Q14004 1512 aaKnown RBP33.42■■■□□ 2.94
TRIM35-203ENST00000521253 HECW1Q76N89 1606 aa33.41■■■□□ 2.94
TRIM35-203ENST00000521253 CFAP43Q8NDM7 1665 aa33.41■■■□□ 2.94
TRIM35-203ENST00000521253 MAGI3Q5TCQ9 1506 aa33.38■■■□□ 2.93
TRIM35-203ENST00000521253 LOC105371045A0A1W2PR82 267 aa33.34■■■□□ 2.93
TRIM35-203ENST00000521253 ABCA9Q8IUA7 1624 aa33.34■■■□□ 2.93
TRIM35-203ENST00000521253 CASKIN1Q8WXD9 1431 aa33.32■■■□□ 2.92
TRIM35-203ENST00000521253 COL17A1Q9UMD9 1497 aaPredicted RBP33.3■■■□□ 2.92
TRIM35-203ENST00000521253 PCF11O94913 1555 aaKnown RBP33.3■■■□□ 2.92
TRIM35-203ENST00000521253 CEP162Q5TB80 1403 aa33.29■■■□□ 2.92
TRIM35-203ENST00000521253 CDK11AQ9UQ88 783 aaPredicted RBP33.24■■■□□ 2.91
TRIM35-203ENST00000521253 FYCO1Q9BQS8 1478 aa33.21■■■□□ 2.91
TRIM35-203ENST00000521253 LRRIQ1Q96JM4 1722 aa33.2■■■□□ 2.91
TRIM35-203ENST00000521253 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.2■■■□□ 2.91
TRIM35-203ENST00000521253 CCDC18Q5T9S5 1454 aa33.18■■■□□ 2.9
TRIM35-203ENST00000521253 TROQ12816 1431 aaPredicted RBP33.15■■■□□ 2.9
TRIM35-203ENST00000521253 TTC37Q6PGP7 1564 aa33.14■■■□□ 2.9
TRIM35-203ENST00000521253 PHLDB1Q86UU1 1377 aa33.11■■■□□ 2.89
TRIM35-203ENST00000521253 NEO1Q92859 1461 aa33.11■■■□□ 2.89
TRIM35-203ENST00000521253 ARAP3Q8WWN8 1544 aa33.1■■■□□ 2.89
TRIM35-203ENST00000521253 KIF14Q15058 1648 aa33.06■■■□□ 2.88
TRIM35-203ENST00000521253 FANCAO15360 1455 aa33.02■■■□□ 2.88
TRIM35-203ENST00000521253 PLCH2O75038 1416 aa33.02■■■□□ 2.88
TRIM35-203ENST00000521253 AKNAQ7Z591 1439 aa32.98■■■□□ 2.87
TRIM35-203ENST00000521253 RAPGEF3O95398 923 aa32.96■■■□□ 2.87
TRIM35-203ENST00000521253 CFAP74Q9C0B2 1584 aa32.94■■■□□ 2.86
TRIM35-203ENST00000521253 MYO5CQ9NQX4 1742 aa32.91■■■□□ 2.86
TRIM35-203ENST00000521253 VPS8Q8N3P4 1428 aa32.9■■■□□ 2.86
TRIM35-203ENST00000521253 EFCAB2Q5VUJ9 269 aa32.89■■■□□ 2.86
TRIM35-203ENST00000521253 DENND4BO75064 1496 aaPredicted RBP32.88■■■□□ 2.85
TRIM35-203ENST00000521253 FRMPD1Q5SYB0 1578 aa32.87■■■□□ 2.85
TRIM35-203ENST00000521253 ADGRL1O94910 1474 aa32.85■■■□□ 2.85
TRIM35-203ENST00000521253 MTUS2Q5JR59 1369 aa32.84■■■□□ 2.85
TRIM35-203ENST00000521253 ARHGAP5Q13017 1502 aa32.84■■■□□ 2.85
TRIM35-203ENST00000521253 AEBP2Q6ZN18 517 aaPredicted RBP32.81■■■□□ 2.84
TRIM35-203ENST00000521253 SCAPERQ9BY12 1400 aa32.81■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms