RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	TRIM41	Q8WV44	630 aa		13.04	□□□□□ -0.32
LIMCH1-222	ENST00000515847	NCBP3	Q53F19	620 aa	Known RBP	13.02	□□□□□ -0.33
LIMCH1-222	ENST00000515847	CHMP7	Q8WUX9	453 aa	Predicted RBP	13.02	□□□□□ -0.33
LIMCH1-222	ENST00000515847	FHAD1	B1AJZ9	1412 aa		13.01	□□□□□ -0.33
LIMCH1-222	ENST00000515847	GRIN2A	Q12879	1464 aa		12.99	□□□□□ -0.33
LIMCH1-222	ENST00000515847	IGF1R	P08069	1367 aa		12.98	□□□□□ -0.33
LIMCH1-222	ENST00000515847	CUL7	Q14999	1698 aa		12.98	□□□□□ -0.33
LIMCH1-222	ENST00000515847	RUSC2	Q8N2Y8	1516 aa		12.98	□□□□□ -0.33
LIMCH1-222	ENST00000515847	CLASP1	Q7Z460	1538 aa		12.97	□□□□□ -0.33
LIMCH1-222	ENST00000515847	CACNB1	Q02641	598 aa	Predicted RBP	12.96	□□□□□ -0.33
LIMCH1-222	ENST00000515847	EEA1	Q15075	1411 aa		12.95	□□□□□ -0.34
LIMCH1-222	ENST00000515847	CEP170	Q5SW79	1584 aa		12.94	□□□□□ -0.34
LIMCH1-222	ENST00000515847	NUP160	Q12769	1436 aa		12.93	□□□□□ -0.34
LIMCH1-222	ENST00000515847	CARMIL1	Q5VZK9	1371 aa		12.91	□□□□□ -0.34
LIMCH1-222	ENST00000515847	RIMBP3C	A6NJZ7	1639 aa		12.9	□□□□□ -0.34
LIMCH1-222	ENST00000515847	RIMBP3B	A6NNM3	1639 aa		12.9	□□□□□ -0.34
LIMCH1-222	ENST00000515847	RIMBP3	Q9UFD9	1639 aa		12.9	□□□□□ -0.34
LIMCH1-222	ENST00000515847	ARHGEF11	O15085	1522 aa		12.89	□□□□□ -0.35
LIMCH1-222	ENST00000515847	RNF39	Q9H2S5	420 aa		12.89	□□□□□ -0.35
LIMCH1-222	ENST00000515847	RAPGEF2	Q9Y4G8	1499 aa		12.85	□□□□□ -0.35
LIMCH1-222	ENST00000515847	NPM3	O75607	178 aa	Known RBP	12.84	□□□□□ -0.35
LIMCH1-222	ENST00000515847	SHROOM2	Q13796	1616 aa		12.84	□□□□□ -0.35
LIMCH1-222	ENST00000515847	PRX	Q9BXM0	1461 aa		12.83	□□□□□ -0.36
LIMCH1-222	ENST00000515847	ARAP1	Q96P48	1450 aa		12.81	□□□□□ -0.36
LIMCH1-222	ENST00000515847	KIAA0586	Q9BVV6	1533 aa		12.81	□□□□□ -0.36
LIMCH1-222	ENST00000515847	ERCC6L2	Q5T890	1561 aa		12.81	□□□□□ -0.36
LIMCH1-222	ENST00000515847	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.79	□□□□□ -0.36
LIMCH1-222	ENST00000515847	CSRNP3	Q8WYN3	585 aa		12.79	□□□□□ -0.36
LIMCH1-222	ENST00000515847	IQGAP2	Q13576	1575 aa		12.77	□□□□□ -0.36
LIMCH1-222	ENST00000515847	JPH4	Q96JJ6	628 aa		12.76	□□□□□ -0.37
LIMCH1-222	ENST00000515847	PRG4	Q92954	1404 aa	Predicted RBP	12.76	□□□□□ -0.37
LIMCH1-222	ENST00000515847	CTTNBP2	Q8WZ74	1663 aa		12.76	□□□□□ -0.37
LIMCH1-222	ENST00000515847	KIF21B	O75037	1637 aa		12.73	□□□□□ -0.37
LIMCH1-222	ENST00000515847	CYB5RL	Q6IPT4	315 aa		12.73	□□□□□ -0.37
LIMCH1-222	ENST00000515847	C1QBP	Q07021	282 aa	Known RBP	12.71	□□□□□ -0.37
LIMCH1-222	ENST00000515847	UGGT2	Q9NYU1	1516 aa		12.69	□□□□□ -0.38
LIMCH1-222	ENST00000515847	DISP1	Q96F81	1524 aa		12.67	□□□□□ -0.38
LIMCH1-222	ENST00000515847	GOLGA3	Q08378	1498 aa		12.67	□□□□□ -0.38
LIMCH1-222	ENST00000515847	CARMIL2	Q6F5E8	1435 aa		12.66	□□□□□ -0.38
LIMCH1-222	ENST00000515847	KIAA0556	O60303	1618 aa		12.66	□□□□□ -0.38
LIMCH1-222	ENST00000515847	EHMT2	Q96KQ7	1210 aa		12.64	□□□□□ -0.39
LIMCH1-222	ENST00000515847	TNIK	Q9UKE5	1360 aa		12.62	□□□□□ -0.39
LIMCH1-222	ENST00000515847	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.62	□□□□□ -0.39
LIMCH1-222	ENST00000515847	KCNA4	P22459	653 aa		12.61	□□□□□ -0.39
LIMCH1-222	ENST00000515847	PTPRG	P23470	1445 aa		12.6	□□□□□ -0.39
LIMCH1-222	ENST00000515847	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.6	□□□□□ -0.39
LIMCH1-222	ENST00000515847	ADCY10	Q96PN6	1610 aa		12.59	□□□□□ -0.39
LIMCH1-222	ENST00000515847	SAMD9	Q5K651	1589 aa		12.59	□□□□□ -0.39
LIMCH1-222	ENST00000515847	UBTF	P17480	764 aa	Known RBP	12.58	□□□□□ -0.4
LIMCH1-222	ENST00000515847	RANGAP1	P46060	587 aa	Predicted RBP	12.56	□□□□□ -0.4
LIMCH1-222	ENST00000515847	EFCAB5	A4FU69	1503 aa		12.54	□□□□□ -0.4
LIMCH1-222	ENST00000515847	P3H3	Q8IVL6	736 aa		12.53	□□□□□ -0.4
LIMCH1-222	ENST00000515847	UACA	Q9BZF9	1416 aa		12.53	□□□□□ -0.4
LIMCH1-222	ENST00000515847	ABCC2	Q92887	1545 aa		12.52	□□□□□ -0.4
LIMCH1-222	ENST00000515847	FHOD3	Q2V2M9	1422 aa		12.52	□□□□□ -0.41
LIMCH1-222	ENST00000515847	UHRF1BP1L	A0JNW5	1464 aa		12.52	□□□□□ -0.41
LIMCH1-222	ENST00000515847	PLB1	Q6P1J6	1458 aa		12.52	□□□□□ -0.41
LIMCH1-222	ENST00000515847	ABCA8	O94911	1581 aa		12.5	□□□□□ -0.41
LIMCH1-222	ENST00000515847	ARHGAP35	Q9NRY4	1499 aa		12.48	□□□□□ -0.41
LIMCH1-222	ENST00000515847	MAPKBP1	O60336	1514 aa		12.47	□□□□□ -0.41
LIMCH1-222	ENST00000515847	ZCCHC11	Q5TAX3	1644 aa	Known RBP	12.47	□□□□□ -0.41
LIMCH1-222	ENST00000515847	NPM1	P06748	294 aa	Known RBP eCLIP	12.46	□□□□□ -0.41
LIMCH1-222	ENST00000515847	TRH	P20396	242 aa	Predicted RBP	12.46	□□□□□ -0.41
LIMCH1-222	ENST00000515847	KDM5B	Q9UGL1	1544 aa		12.46	□□□□□ -0.42
LIMCH1-222	ENST00000515847	RAPGEF6	Q8TEU7	1601 aa		12.45	□□□□□ -0.42
LIMCH1-222	ENST00000515847	FMN1	Q68DA7	1419 aa		12.43	□□□□□ -0.42
LIMCH1-222	ENST00000515847	KIF13A	Q9H1H9	1805 aa		12.42	□□□□□ -0.42
LIMCH1-222	ENST00000515847	CLIP1	P30622	1438 aa		12.42	□□□□□ -0.42
LIMCH1-222	ENST00000515847	ASXL2	Q76L83	1435 aa		12.42	□□□□□ -0.42
LIMCH1-222	ENST00000515847	LOC105371045	A0A1W2PR82	267 aa		12.41	□□□□□ -0.42
LIMCH1-222	ENST00000515847	DIP2B	Q9P265	1576 aa		12.41	□□□□□ -0.42
LIMCH1-222	ENST00000515847	NUP153	P49790	1475 aa	Known RBP	12.4	□□□□□ -0.42
LIMCH1-222	ENST00000515847	ABCC10	Q5T3U5	1492 aa		12.4	□□□□□ -0.42
LIMCH1-222	ENST00000515847	ARID3C	A6NKF2	412 aa		12.4	□□□□□ -0.42
LIMCH1-222	ENST00000515847	CEP162	Q5TB80	1403 aa		12.39	□□□□□ -0.43
LIMCH1-222	ENST00000515847	ATP10B	O94823	1461 aa		12.38	□□□□□ -0.43
LIMCH1-222	ENST00000515847	WDR7	Q9Y4E6	1490 aa		12.37	□□□□□ -0.43
LIMCH1-222	ENST00000515847	HECW1	Q76N89	1606 aa		12.37	□□□□□ -0.43
LIMCH1-222	ENST00000515847	PCF11	O94913	1555 aa	Known RBP	12.36	□□□□□ -0.43
LIMCH1-222	ENST00000515847		U3KPZ7	1027 aa	Predicted RBP	12.36	□□□□□ -0.43
LIMCH1-222	ENST00000515847	FAM69C	Q0P6D2	419 aa		12.35	□□□□□ -0.43
LIMCH1-222	ENST00000515847	EPRS	P07814	1512 aa	Known RBP	12.35	□□□□□ -0.43
LIMCH1-222	ENST00000515847	CDK13	Q14004	1512 aa	Known RBP	12.34	□□□□□ -0.43
LIMCH1-222	ENST00000515847	GLI2	P10070	1586 aa		12.33	□□□□□ -0.44
LIMCH1-222	ENST00000515847	LRRIQ1	Q96JM4	1722 aa		12.32	□□□□□ -0.44
LIMCH1-222	ENST00000515847	CASKIN1	Q8WXD9	1431 aa		12.32	□□□□□ -0.44
LIMCH1-222	ENST00000515847	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.31	□□□□□ -0.44
LIMCH1-222	ENST00000515847	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.31	□□□□□ -0.44
LIMCH1-222	ENST00000515847	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.31	□□□□□ -0.44
LIMCH1-222	ENST00000515847	FYCO1	Q9BQS8	1478 aa		12.31	□□□□□ -0.44
LIMCH1-222	ENST00000515847	TSPOAP1	O95153	1857 aa		12.31	□□□□□ -0.44
LIMCH1-222	ENST00000515847	MAP3K4	Q9Y6R4	1608 aa		12.29	□□□□□ -0.44
LIMCH1-222	ENST00000515847	CCDC18	Q5T9S5	1454 aa		12.29	□□□□□ -0.44
LIMCH1-222	ENST00000515847	KCNH8	Q96L42	1107 aa		12.28	□□□□□ -0.44
LIMCH1-222	ENST00000515847	PPRC1	Q5VV67	1664 aa	Known RBP	12.28	□□□□□ -0.44
LIMCH1-222	ENST00000515847	CFAP43	Q8NDM7	1665 aa		12.27	□□□□□ -0.45
LIMCH1-222	ENST00000515847	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.27	□□□□□ -0.45
LIMCH1-222	ENST00000515847	SLC4A2	P04920	1241 aa		12.26	□□□□□ -0.45
LIMCH1-222	ENST00000515847	PLEKHD1	A6NEE1	506 aa		12.25	□□□□□ -0.45
LIMCH1-222	ENST00000515847	VPS8	Q8N3P4	1428 aa		12.25	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms