RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 PRG4Q92954 1404 aaPredicted RBP19.53■□□□□ 0.72
VCAN-212ENST00000515397 CUL7Q14999 1698 aa19.47■□□□□ 0.71
VCAN-212ENST00000515397 TTBK1Q5TCY1 1321 aaPredicted RBP19.47■□□□□ 0.71
VCAN-212ENST00000515397 SHROOM2Q13796 1616 aa19.46■□□□□ 0.71
VCAN-212ENST00000515397 KIAA0586Q9BVV6 1533 aa19.45■□□□□ 0.7
VCAN-212ENST00000515397 FAM9AQ8IZU1 332 aaPredicted RBP19.39■□□□□ 0.69
VCAN-212ENST00000515397 RAPGEF2Q9Y4G8 1499 aa19.39■□□□□ 0.69
VCAN-212ENST00000515397 CHIC1Q5VXU3 224 aa19.33■□□□□ 0.68
VCAN-212ENST00000515397 CSRNP3Q8WYN3 585 aa19.32■□□□□ 0.68
VCAN-212ENST00000515397 IQGAP2Q13576 1575 aa19.27■□□□□ 0.68
VCAN-212ENST00000515397 PTPRGP23470 1445 aa19.27■□□□□ 0.68
VCAN-212ENST00000515397 PRXQ9BXM0 1461 aa19.27■□□□□ 0.67
VCAN-212ENST00000515397 EHMT2Q96KQ7 1210 aa19.26■□□□□ 0.67
VCAN-212ENST00000515397 NPM1P06748 294 aaKnown RBP eCLIP19.25■□□□□ 0.67
VCAN-212ENST00000515397 CARMIL2Q6F5E8 1435 aa19.25■□□□□ 0.67
VCAN-212ENST00000515397 TNIKQ9UKE5 1360 aa19.23■□□□□ 0.67
VCAN-212ENST00000515397 DISP1Q96F81 1524 aa19.22■□□□□ 0.67
VCAN-212ENST00000515397 RANGAP1P46060 587 aaPredicted RBP19.21■□□□□ 0.67
VCAN-212ENST00000515397 P3H3Q8IVL6 736 aa19.19■□□□□ 0.66
VCAN-212ENST00000515397 ADCY10Q96PN6 1610 aa19.18■□□□□ 0.66
VCAN-212ENST00000515397 UGGT2Q9NYU1 1516 aa19.16■□□□□ 0.66
VCAN-212ENST00000515397 FAM69CQ0P6D2 419 aa19.15■□□□□ 0.66
VCAN-212ENST00000515397 EEA1Q15075 1411 aa19.12■□□□□ 0.65
VCAN-212ENST00000515397 UACAQ9BZF9 1416 aa19.09■□□□□ 0.65
VCAN-212ENST00000515397 CTTNBP2Q8WZ74 1663 aa19.09■□□□□ 0.65
VCAN-212ENST00000515397 KIAA0556O60303 1618 aa19.09■□□□□ 0.65
VCAN-212ENST00000515397 ARID3CA6NKF2 412 aa19.06■□□□□ 0.64
VCAN-212ENST00000515397 ABCC2Q92887 1545 aa19.05■□□□□ 0.64
VCAN-212ENST00000515397 GOLGA3Q08378 1498 aa19.03■□□□□ 0.64
VCAN-212ENST00000515397 ABCC10Q5T3U5 1492 aa19.03■□□□□ 0.64
VCAN-212ENST00000515397 PLB1Q6P1J6 1458 aa19.03■□□□□ 0.64
VCAN-212ENST00000515397 UBTFP17480 764 aaKnown RBP19.03■□□□□ 0.64
VCAN-212ENST00000515397 MAPKBP1O60336 1514 aa19.02■□□□□ 0.64
VCAN-212ENST00000515397 UHRF1BP1LA0JNW5 1464 aa19.01■□□□□ 0.63
VCAN-212ENST00000515397 ASXL2Q76L83 1435 aa19■□□□□ 0.63
VCAN-212ENST00000515397 KIF13AQ9H1H9 1805 aa19■□□□□ 0.63
VCAN-212ENST00000515397 AEBP2Q6ZN18 517 aaPredicted RBP18.98■□□□□ 0.63
VCAN-212ENST00000515397 DIP2BQ9P265 1576 aa18.96■□□□□ 0.63
VCAN-212ENST00000515397 KDM5BQ9UGL1 1544 aa18.95■□□□□ 0.62
VCAN-212ENST00000515397 KCNH8Q96L42 1107 aa18.94■□□□□ 0.62
VCAN-212ENST00000515397 KIF21BO75037 1637 aa18.93■□□□□ 0.62
VCAN-212ENST00000515397 FHOD3Q2V2M9 1422 aa18.92■□□□□ 0.62
VCAN-212ENST00000515397 ABCA8O94911 1581 aa18.91■□□□□ 0.62
VCAN-212ENST00000515397 ZCCHC11Q5TAX3 1644 aaKnown RBP18.9■□□□□ 0.62
VCAN-212ENST00000515397 TSPOAP1O95153 1857 aa18.89■□□□□ 0.61
VCAN-212ENST00000515397 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.88■□□□□ 0.61
VCAN-212ENST00000515397 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
VCAN-212ENST00000515397 SAMD9Q5K651 1589 aa18.88■□□□□ 0.61
VCAN-212ENST00000515397 EPRSP07814 1512 aaKnown RBP18.85■□□□□ 0.61
VCAN-212ENST00000515397 ATP10BO94823 1461 aa18.84■□□□□ 0.61
VCAN-212ENST00000515397 ATP1B4Q9UN42 357 aaPredicted RBP18.82■□□□□ 0.6
VCAN-212ENST00000515397 WDR7Q9Y4E6 1490 aa18.82■□□□□ 0.6
VCAN-212ENST00000515397 GLI2P10070 1586 aa18.79■□□□□ 0.6
VCAN-212ENST00000515397 RAPGEF6Q8TEU7 1601 aa18.76■□□□□ 0.59
VCAN-212ENST00000515397 NUP153P49790 1475 aaKnown RBP18.76■□□□□ 0.59
VCAN-212ENST00000515397 ARHGAP35Q9NRY4 1499 aa18.75■□□□□ 0.59
VCAN-212ENST00000515397 EFCAB5A4FU69 1503 aa18.74■□□□□ 0.59
VCAN-212ENST00000515397 CD109Q6YHK3 1445 aa18.74■□□□□ 0.59
VCAN-212ENST00000515397 PPRC1Q5VV67 1664 aaKnown RBP18.73■□□□□ 0.59
VCAN-212ENST00000515397 COL17A1Q9UMD9 1497 aaPredicted RBP18.71■□□□□ 0.59
VCAN-212ENST00000515397 KDM6BO15054 1643 aa18.71■□□□□ 0.59
VCAN-212ENST00000515397 PLEKHD1A6NEE1 506 aa18.71■□□□□ 0.59
VCAN-212ENST00000515397 MAP3K4Q9Y6R4 1608 aa18.7■□□□□ 0.58
VCAN-212ENST00000515397 LOC105371045A0A1W2PR82 267 aa18.67■□□□□ 0.58
VCAN-212ENST00000515397 CDK13Q14004 1512 aaKnown RBP18.65■□□□□ 0.58
VCAN-212ENST00000515397 TEX14Q8IWB6 1497 aa18.64■□□□□ 0.57
VCAN-212ENST00000515397 FMN1Q68DA7 1419 aa18.63■□□□□ 0.57
VCAN-212ENST00000515397 MAGI3Q5TCQ9 1506 aa18.61■□□□□ 0.57
VCAN-212ENST00000515397 CLIP1P30622 1438 aa18.6■□□□□ 0.57
VCAN-212ENST00000515397 CFAP43Q8NDM7 1665 aa18.59■□□□□ 0.57
VCAN-212ENST00000515397 RAPGEF3O95398 923 aa18.56■□□□□ 0.56
VCAN-212ENST00000515397 KDM4FA0A1W2PPD8 638 aa18.55■□□□□ 0.56
VCAN-212ENST00000515397 ABCA9Q8IUA7 1624 aa18.54■□□□□ 0.56
VCAN-212ENST00000515397 CDK11AQ9UQ88 783 aaPredicted RBP18.53■□□□□ 0.56
VCAN-212ENST00000515397 HECW1Q76N89 1606 aa18.52■□□□□ 0.55
VCAN-212ENST00000515397 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.5■□□□□ 0.55
VCAN-212ENST00000515397 CASKIN1Q8WXD9 1431 aa18.49■□□□□ 0.55
VCAN-212ENST00000515397 PCF11O94913 1555 aaKnown RBP18.47■□□□□ 0.55
VCAN-212ENST00000515397 CEP162Q5TB80 1403 aa18.47■□□□□ 0.55
VCAN-212ENST00000515397 TTC37Q6PGP7 1564 aa18.47■□□□□ 0.55
VCAN-212ENST00000515397 LRRIQ1Q96JM4 1722 aa18.46■□□□□ 0.55
VCAN-212ENST00000515397 ARAP3Q8WWN8 1544 aa18.45■□□□□ 0.54
VCAN-212ENST00000515397 TROQ12816 1431 aaPredicted RBP18.44■□□□□ 0.54
VCAN-212ENST00000515397 AKNAQ7Z591 1439 aa18.44■□□□□ 0.54
VCAN-212ENST00000515397 NEO1Q92859 1461 aa18.44■□□□□ 0.54
VCAN-212ENST00000515397 FANCAO15360 1455 aa18.43■□□□□ 0.54
VCAN-212ENST00000515397 PHLDB1Q86UU1 1377 aa18.42■□□□□ 0.54
VCAN-212ENST00000515397 KIF14Q15058 1648 aa18.41■□□□□ 0.54
VCAN-212ENST00000515397 PLCH2O75038 1416 aa18.4■□□□□ 0.54
VCAN-212ENST00000515397 EFCAB2Q5VUJ9 269 aa18.4■□□□□ 0.54
VCAN-212ENST00000515397 FYCO1Q9BQS8 1478 aa18.39■□□□□ 0.54
VCAN-212ENST00000515397 DENND4BO75064 1496 aaPredicted RBP18.38■□□□□ 0.53
VCAN-212ENST00000515397 ADGRL1O94910 1474 aa18.38■□□□□ 0.53
VCAN-212ENST00000515397 SCAPERQ9BY12 1400 aa18.37■□□□□ 0.53
VCAN-212ENST00000515397 CCDC18Q5T9S5 1454 aa18.37■□□□□ 0.53
VCAN-212ENST00000515397 ARID4BQ4LE39 1312 aaPredicted RBP18.34■□□□□ 0.53
VCAN-212ENST00000515397 ZNF777Q9ULD5 760 aaPredicted RBP18.34■□□□□ 0.53
VCAN-212ENST00000515397 FRMPD1Q5SYB0 1578 aa18.34■□□□□ 0.53
VCAN-212ENST00000515397 AFAP1Q8N556 730 aa18.33■□□□□ 0.52
VCAN-212ENST00000515397 ARHGAP5Q13017 1502 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms