RNA–Protein interactions for RNA: ENST00000514929.1

SNF8-213, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 5

Gene SNF8, Length 775 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-213ENST00000514929 CARMIL1Q5VZK9 1371 aa41.89■■■■■ 4.3
SNF8-213ENST00000514929 PRG4Q92954 1404 aaPredicted RBP41.87■■■■■ 4.29
SNF8-213ENST00000514929 TRHP20396 242 aaPredicted RBP41.84■■■■■ 4.29
SNF8-213ENST00000514929 KIAA0586Q9BVV6 1533 aa41.79■■■■■ 4.28
SNF8-213ENST00000514929 RAPGEF2Q9Y4G8 1499 aa41.59■■■■■ 4.25
SNF8-213ENST00000514929 IQGAP2Q13576 1575 aa41.5■■■■■ 4.23
SNF8-213ENST00000514929 CARMIL2Q6F5E8 1435 aa41.41■■■■■ 4.22
SNF8-213ENST00000514929 NPM1P06748 294 aaKnown RBP eCLIP41.31■■■■■ 4.2
SNF8-213ENST00000514929 PTPRGP23470 1445 aa41.31■■■■■ 4.2
SNF8-213ENST00000514929 PRXQ9BXM0 1461 aa41.29■■■■■ 4.2
SNF8-213ENST00000514929 TTBK1Q5TCY1 1321 aaPredicted RBP41.29■■■■■ 4.2
SNF8-213ENST00000514929 ADCY10Q96PN6 1610 aa41.29■■■■■ 4.2
SNF8-213ENST00000514929 TNIKQ9UKE5 1360 aa41.28■■■■■ 4.2
SNF8-213ENST00000514929 UGGT2Q9NYU1 1516 aa41.24■■■■■ 4.19
SNF8-213ENST00000514929 DISP1Q96F81 1524 aa41.23■■■■■ 4.19
SNF8-213ENST00000514929 CTTNBP2Q8WZ74 1663 aa41.23■■■■■ 4.19
SNF8-213ENST00000514929 CSRNP3Q8WYN3 585 aa41.17■■■■■ 4.18
SNF8-213ENST00000514929 MAPKBP1O60336 1514 aa41.12■■■■■ 4.17
SNF8-213ENST00000514929 KIAA0556O60303 1618 aa41.11■■■■■ 4.17
SNF8-213ENST00000514929 EEA1Q15075 1411 aa41.1■■■■■ 4.17
SNF8-213ENST00000514929 KIF13AQ9H1H9 1805 aa41.07■■■■■ 4.16
SNF8-213ENST00000514929 ABCC10Q5T3U5 1492 aa41.01■■■■■ 4.16
SNF8-213ENST00000514929 UACAQ9BZF9 1416 aa41.01■■■■■ 4.15
SNF8-213ENST00000514929 GOLGA3Q08378 1498 aa41■■■■■ 4.15
SNF8-213ENST00000514929 ABCC2Q92887 1545 aa40.99■■■■■ 4.15
SNF8-213ENST00000514929 UHRF1BP1LA0JNW5 1464 aa40.98■■■■■ 4.15
SNF8-213ENST00000514929 FAM69CQ0P6D2 419 aa40.98■■■■■ 4.15
SNF8-213ENST00000514929 FAM9AQ8IZU1 332 aaPredicted RBP40.97■■■■■ 4.15
SNF8-213ENST00000514929 CHIC1Q5VXU3 224 aa40.94■■■■■ 4.14
SNF8-213ENST00000514929 DIP2BQ9P265 1576 aa40.93■■■■■ 4.14
SNF8-213ENST00000514929 KDM5BQ9UGL1 1544 aa40.79■■■■■ 4.12
SNF8-213ENST00000514929 ASXL2Q76L83 1435 aa40.79■■■■■ 4.12
SNF8-213ENST00000514929 PLB1Q6P1J6 1458 aa40.77■■■■■ 4.12
SNF8-213ENST00000514929 ZCCHC11Q5TAX3 1644 aaKnown RBP40.72■■■■■ 4.11
SNF8-213ENST00000514929 P3H3Q8IVL6 736 aa40.72■■■■■ 4.11
SNF8-213ENST00000514929 KIF21BO75037 1637 aa40.71■■■■■ 4.11
SNF8-213ENST00000514929 ABCA8O94911 1581 aa40.68■■■■■ 4.1
SNF8-213ENST00000514929 SAMD9Q5K651 1589 aa40.65■■■■■ 4.1
SNF8-213ENST00000514929 TSPOAP1O95153 1857 aa40.63■■■■■ 4.09
SNF8-213ENST00000514929 RANGAP1P46060 587 aaPredicted RBP40.6■■■■■ 4.09
SNF8-213ENST00000514929 GLI2P10070 1586 aa40.59■■■■■ 4.09
SNF8-213ENST00000514929 EPRSP07814 1512 aaKnown RBP40.54■■■■■ 4.08
SNF8-213ENST00000514929 EHMT2Q96KQ7 1210 aa40.51■■■■■ 4.08
SNF8-213ENST00000514929 WDR7Q9Y4E6 1490 aa40.5■■■■■ 4.07
SNF8-213ENST00000514929 UBTFP17480 764 aaKnown RBP40.45■■■■■ 4.07
SNF8-213ENST00000514929 KDM6BO15054 1643 aa40.44■■■■■ 4.06
SNF8-213ENST00000514929 FHOD3Q2V2M9 1422 aa40.42■■■■■ 4.06
SNF8-213ENST00000514929 ARID3CA6NKF2 412 aa40.41■■■■■ 4.06
SNF8-213ENST00000514929 RAPGEF6Q8TEU7 1601 aa40.39■■■■■ 4.06
SNF8-213ENST00000514929 MAP3K4Q9Y6R4 1608 aa40.39■■■■■ 4.06
SNF8-213ENST00000514929 EFCAB5A4FU69 1503 aa40.39■■■■■ 4.06
SNF8-213ENST00000514929 PPRC1Q5VV67 1664 aaKnown RBP40.39■■■■■ 4.06
SNF8-213ENST00000514929 ATP10BO94823 1461 aa40.35■■■■■ 4.05
SNF8-213ENST00000514929 KCNH8Q96L42 1107 aa40.34■■■■■ 4.05
SNF8-213ENST00000514929 TEX14Q8IWB6 1497 aa40.28■■■■■ 4.04
SNF8-213ENST00000514929 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.23■■■■■ 4.03
SNF8-213ENST00000514929 HNRNPUL2Q1KMD3 747 aaKnown RBP40.23■■■■■ 4.03
SNF8-213ENST00000514929 NUP153P49790 1475 aaKnown RBP40.22■■■■■ 4.03
SNF8-213ENST00000514929 CFAP43Q8NDM7 1665 aa40.21■■■■■ 4.03
SNF8-213ENST00000514929 CD109Q6YHK3 1445 aa40.2■■■■■ 4.03
SNF8-213ENST00000514929 AEBP2Q6ZN18 517 aaPredicted RBP40.13■■■■■ 4.01
SNF8-213ENST00000514929 MAGI3Q5TCQ9 1506 aa40.12■■■■■ 4.01
SNF8-213ENST00000514929 ARHGAP35Q9NRY4 1499 aa40.11■■■■■ 4.01
SNF8-213ENST00000514929 COL17A1Q9UMD9 1497 aaPredicted RBP40.07■■■■■ 4
SNF8-213ENST00000514929 FMN1Q68DA7 1419 aa40.04■■■■■ 4
SNF8-213ENST00000514929 ABCA9Q8IUA7 1624 aa40.02■■■■■ 4
SNF8-213ENST00000514929 PLEKHD1A6NEE1 506 aa40■■■■□ 3.99
SNF8-213ENST00000514929 ATP1B4Q9UN42 357 aaPredicted RBP39.95■■■■□ 3.99
SNF8-213ENST00000514929 HECW1Q76N89 1606 aa39.91■■■■□ 3.98
SNF8-213ENST00000514929 CDK13Q14004 1512 aaKnown RBP39.91■■■■□ 3.98
SNF8-213ENST00000514929 PHLDB1Q86UU1 1377 aa39.79■■■■□ 3.96
SNF8-213ENST00000514929 ARAP3Q8WWN8 1544 aa39.79■■■■□ 3.96
SNF8-213ENST00000514929 NEO1Q92859 1461 aa39.75■■■■□ 3.95
SNF8-213ENST00000514929 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP39.74■■■■□ 3.95
SNF8-213ENST00000514929 CDK11AQ9UQ88 783 aaPredicted RBP39.73■■■■□ 3.95
SNF8-213ENST00000514929 CLIP1P30622 1438 aa39.73■■■■□ 3.95
SNF8-213ENST00000514929 KDM4FA0A1W2PPD8 638 aa39.72■■■■□ 3.95
SNF8-213ENST00000514929 TTC37Q6PGP7 1564 aa39.69■■■■□ 3.94
SNF8-213ENST00000514929 PCF11O94913 1555 aaKnown RBP39.66■■■■□ 3.94
SNF8-213ENST00000514929 CASKIN1Q8WXD9 1431 aa39.65■■■■□ 3.94
SNF8-213ENST00000514929 LRRIQ1Q96JM4 1722 aa39.63■■■■□ 3.94
SNF8-213ENST00000514929 FANCAO15360 1455 aa39.61■■■■□ 3.93
SNF8-213ENST00000514929 CFAP74Q9C0B2 1584 aa39.59■■■■□ 3.93
SNF8-213ENST00000514929 RAPGEF3O95398 923 aa39.59■■■■□ 3.93
SNF8-213ENST00000514929 ADGRL1O94910 1474 aa39.59■■■■□ 3.93
SNF8-213ENST00000514929 TROQ12816 1431 aaPredicted RBP39.57■■■■□ 3.93
SNF8-213ENST00000514929 CCDC18Q5T9S5 1454 aa39.56■■■■□ 3.92
SNF8-213ENST00000514929 AKNAQ7Z591 1439 aa39.56■■■■□ 3.92
SNF8-213ENST00000514929 KIF14Q15058 1648 aa39.54■■■■□ 3.92
SNF8-213ENST00000514929 FYCO1Q9BQS8 1478 aa39.54■■■■□ 3.92
SNF8-213ENST00000514929 PLCH2O75038 1416 aa39.51■■■■□ 3.92
SNF8-213ENST00000514929 FRMPD1Q5SYB0 1578 aa39.49■■■■□ 3.91
SNF8-213ENST00000514929 DENND4BO75064 1496 aaPredicted RBP39.49■■■■□ 3.91
SNF8-213ENST00000514929 MYO5CQ9NQX4 1742 aa39.46■■■■□ 3.91
SNF8-213ENST00000514929 CEP162Q5TB80 1403 aa39.41■■■■□ 3.9
SNF8-213ENST00000514929 RICTORQ6R327 1708 aa39.4■■■■□ 3.9
SNF8-213ENST00000514929 EFCAB2Q5VUJ9 269 aa39.39■■■■□ 3.9
SNF8-213ENST00000514929 SCAPERQ9BY12 1400 aa39.33■■■■□ 3.89
SNF8-213ENST00000514929 ARHGAP5Q13017 1502 aa39.33■■■■□ 3.89
SNF8-213ENST00000514929 LOC105371045A0A1W2PR82 267 aa39.3■■■■□ 3.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms