RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 RRBP1Q9P2E9 1410 aaKnown RBP12.32□□□□□ -0.44
CPNE4-211ENST00000514439 MAP3K1Q13233 1512 aa12.32□□□□□ -0.44
CPNE4-211ENST00000514439 TIAM1Q13009 1591 aa12.31□□□□□ -0.44
CPNE4-211ENST00000514439 FHAD1B1AJZ9 1412 aa12.31□□□□□ -0.44
CPNE4-211ENST00000514439 CTTNBP2Q8WZ74 1663 aa12.3□□□□□ -0.44
CPNE4-211ENST00000514439 EFCAB5A4FU69 1503 aa12.3□□□□□ -0.44
CPNE4-211ENST00000514439 TARBP1Q13395 1621 aaKnown RBP12.29□□□□□ -0.44
CPNE4-211ENST00000514439 FHOD3Q2V2M9 1422 aa12.29□□□□□ -0.44
CPNE4-211ENST00000514439 P3H3Q8IVL6 736 aa12.29□□□□□ -0.44
CPNE4-211ENST00000514439 PCF11O94913 1555 aaKnown RBP12.29□□□□□ -0.44
CPNE4-211ENST00000514439 CCNB3Q8WWL7 1395 aa12.27□□□□□ -0.45
CPNE4-211ENST00000514439 MRC2Q9UBG0 1479 aa12.27□□□□□ -0.45
CPNE4-211ENST00000514439 LRRC9Q6ZRR7 1453 aa12.26□□□□□ -0.45
CPNE4-211ENST00000514439 CFAP43Q8NDM7 1665 aa12.25□□□□□ -0.45
CPNE4-211ENST00000514439 FYCO1Q9BQS8 1478 aa12.24□□□□□ -0.45
CPNE4-211ENST00000514439 AQRO60306 1485 aaKnown RBP eCLIP12.23□□□□□ -0.45
CPNE4-211ENST00000514439 CASKIN1Q8WXD9 1431 aa12.23□□□□□ -0.45
CPNE4-211ENST00000514439 FMN1Q68DA7 1419 aa12.21□□□□□ -0.45
CPNE4-211ENST00000514439 SAMD9Q5K651 1589 aa12.21□□□□□ -0.46
CPNE4-211ENST00000514439 ATP1B4Q9UN42 357 aaPredicted RBP12.21□□□□□ -0.46
CPNE4-211ENST00000514439 PHLDB1Q86UU1 1377 aa12.2□□□□□ -0.46
CPNE4-211ENST00000514439 PBRM1Q86U86 1689 aa12.2□□□□□ -0.46
CPNE4-211ENST00000514439 DHX57Q6P158 1386 aaKnown RBP12.19□□□□□ -0.46
CPNE4-211ENST00000514439 SNAPC4Q5SXM2 1469 aa12.19□□□□□ -0.46
CPNE4-211ENST00000514439 WDR62O43379 1518 aa12.18□□□□□ -0.46
CPNE4-211ENST00000514439 ADAMTS12P58397 1594 aa12.17□□□□□ -0.46
CPNE4-211ENST00000514439 ITGAEP38570 1179 aa12.17□□□□□ -0.46
CPNE4-211ENST00000514439 CLSPNQ9HAW4 1339 aa12.17□□□□□ -0.46
CPNE4-211ENST00000514439 GRIN2BQ13224 1484 aa12.16□□□□□ -0.46
CPNE4-211ENST00000514439 IFT140Q96RY7 1462 aa12.16□□□□□ -0.46
CPNE4-211ENST00000514439 ZNF608Q9ULD9 1512 aaPredicted RBP12.15□□□□□ -0.47
CPNE4-211ENST00000514439 DIEXFQ68CQ4 756 aaKnown RBP12.14□□□□□ -0.47
CPNE4-211ENST00000514439 ZNF316A6NFI3 1004 aaPredicted RBP12.14□□□□□ -0.47
CPNE4-211ENST00000514439 IQGAP2Q13576 1575 aa12.12□□□□□ -0.47
CPNE4-211ENST00000514439 FAM50AQ14320 339 aaKnown RBP12.11□□□□□ -0.47
CPNE4-211ENST00000514439 ERCC6Q03468 1493 aa12.11□□□□□ -0.47
CPNE4-211ENST00000514439 THOC2Q8NI27 1593 aaKnown RBP12.11□□□□□ -0.47
CPNE4-211ENST00000514439 RAB3GAP2Q9H2M9 1393 aa12.11□□□□□ -0.47
CPNE4-211ENST00000514439 MTUS2Q5JR59 1369 aa12.1□□□□□ -0.47
CPNE4-211ENST00000514439 LRRIQ1Q96JM4 1722 aa12.1□□□□□ -0.47
CPNE4-211ENST00000514439 SETD5Q9C0A6 1442 aa12.08□□□□□ -0.48
CPNE4-211ENST00000514439 EIF4G3O43432 1585 aaKnown RBP12.08□□□□□ -0.48
CPNE4-211ENST00000514439 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.07□□□□□ -0.48
CPNE4-211ENST00000514439 FGD6Q6ZV73 1430 aa12.07□□□□□ -0.48
CPNE4-211ENST00000514439 EHBP1L1Q8N3D4 1523 aa12.05□□□□□ -0.48
CPNE4-211ENST00000514439 UGGT2Q9NYU1 1516 aa12.05□□□□□ -0.48
CPNE4-211ENST00000514439 PLPPR3Q6T4P5 718 aa12.05□□□□□ -0.48
CPNE4-211ENST00000514439 NCOA2Q15596 1464 aa12.05□□□□□ -0.48
CPNE4-211ENST00000514439 CCDC18Q5T9S5 1454 aa12.05□□□□□ -0.48
CPNE4-211ENST00000514439 HECW1Q76N89 1606 aa12.04□□□□□ -0.48
CPNE4-211ENST00000514439 GRIN2AQ12879 1464 aa12.04□□□□□ -0.48
CPNE4-211ENST00000514439 KIAA0586Q9BVV6 1533 aa12.04□□□□□ -0.48
CPNE4-211ENST00000514439 MAPKBP1O60336 1514 aa12.03□□□□□ -0.48
CPNE4-211ENST00000514439 MAGI3Q5TCQ9 1506 aa12.03□□□□□ -0.48
CPNE4-211ENST00000514439 SUPT6HQ7KZ85 1726 aaKnown RBP12.02□□□□□ -0.48
CPNE4-211ENST00000514439 MYOM3Q5VTT5 1437 aa12.02□□□□□ -0.49
CPNE4-211ENST00000514439 EPRSP07814 1512 aaKnown RBP12.01□□□□□ -0.49
CPNE4-211ENST00000514439 MAGI1Q96QZ7 1491 aaPredicted RBP12.01□□□□□ -0.49
CPNE4-211ENST00000514439 ARHGEF11O15085 1522 aa12□□□□□ -0.49
CPNE4-211ENST00000514439 KIAA0556O60303 1618 aa12□□□□□ -0.49
CPNE4-211ENST00000514439 DISP1Q96F81 1524 aa11.99□□□□□ -0.49
CPNE4-211ENST00000514439 CDK13Q14004 1512 aaKnown RBP11.98□□□□□ -0.49
CPNE4-211ENST00000514439 SYNJ2O15056 1496 aa11.97□□□□□ -0.49
CPNE4-211ENST00000514439 PTPRKQ15262 1439 aa11.97□□□□□ -0.49
CPNE4-211ENST00000514439 CEP170Q5SW79 1584 aa11.96□□□□□ -0.5
CPNE4-211ENST00000514439 CHMP7Q8WUX9 453 aaPredicted RBP11.95□□□□□ -0.5
CPNE4-211ENST00000514439 PTPN23Q9H3S7 1636 aa11.95□□□□□ -0.5
CPNE4-211ENST00000514439 HFM1A2PYH4 1435 aa11.95□□□□□ -0.5
CPNE4-211ENST00000514439 ARID3CA6NKF2 412 aa11.94□□□□□ -0.5
CPNE4-211ENST00000514439 TCOF1Q13428 1488 aaKnown RBP11.93□□□□□ -0.5
CPNE4-211ENST00000514439 NUP153P49790 1475 aaKnown RBP11.92□□□□□ -0.5
CPNE4-211ENST00000514439 FBLN2P98095 1184 aa11.92□□□□□ -0.5
CPNE4-211ENST00000514439 RAPGEF6Q8TEU7 1601 aa11.91□□□□□ -0.5
CPNE4-211ENST00000514439 NUP160Q12769 1436 aa11.91□□□□□ -0.5
CPNE4-211ENST00000514439 NAIPQ13075 1403 aa11.91□□□□□ -0.5
CPNE4-211ENST00000514439 MIER1Q8N108 512 aa11.9□□□□□ -0.5
CPNE4-211ENST00000514439 SIN3AQ96ST3 1273 aa11.9□□□□□ -0.5
CPNE4-211ENST00000514439 MIA2Q96PC5 1412 aa11.9□□□□□ -0.5
CPNE4-211ENST00000514439 UACAQ9BZF9 1416 aa11.89□□□□□ -0.51
CPNE4-211ENST00000514439 NEUROD1Q13562 356 aa11.88□□□□□ -0.51
CPNE4-211ENST00000514439 ACIN1Q9UKV3 1341 aaKnown RBP11.87□□□□□ -0.51
CPNE4-211ENST00000514439 SCAF1Q9H7N4 1312 aaKnown RBP11.87□□□□□ -0.51
CPNE4-211ENST00000514439 CARMIL2Q6F5E8 1435 aa11.86□□□□□ -0.51
CPNE4-211ENST00000514439 CENPBP07199 599 aaPredicted RBP11.86□□□□□ -0.51
CPNE4-211ENST00000514439 JPH4Q96JJ6 628 aa11.86□□□□□ -0.51
CPNE4-211ENST00000514439 PLB1Q6P1J6 1458 aa11.86□□□□□ -0.51
CPNE4-211ENST00000514439 TIMELESSQ9UNS1 1208 aa11.86□□□□□ -0.51
CPNE4-211ENST00000514439 AKNAQ7Z591 1439 aa11.85□□□□□ -0.51
CPNE4-211ENST00000514439 CHIC2Q9UKJ5 165 aa11.85□□□□□ -0.51
CPNE4-211ENST00000514439 CDK11AQ9UQ88 783 aaPredicted RBP11.85□□□□□ -0.51
CPNE4-211ENST00000514439 RRP7BPQ9NSQ0 103 aa11.84□□□□□ -0.51
CPNE4-211ENST00000514439 GCC2Q8IWJ2 1684 aa11.84□□□□□ -0.51
CPNE4-211ENST00000514439 TROQ12816 1431 aaPredicted RBP11.83□□□□□ -0.52
CPNE4-211ENST00000514439 PRG4Q92954 1404 aaPredicted RBP11.83□□□□□ -0.52
CPNE4-211ENST00000514439 DAPK1P53355 1430 aa11.81□□□□□ -0.52
CPNE4-211ENST00000514439 YTHDC1Q96MU7 727 aaKnown RBP11.8□□□□□ -0.52
CPNE4-211ENST00000514439 KDM6BO15054 1643 aa11.79□□□□□ -0.52
CPNE4-211ENST00000514439 PPP1R15AO75807 674 aaPredicted RBP11.79□□□□□ -0.52
CPNE4-211ENST00000514439 DNMT1P26358 1616 aaKnown RBP11.79□□□□□ -0.52
CPNE4-211ENST00000514439 ABCA8O94911 1581 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms