RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	RAPGEF2	Q9Y4G8	1499 aa		12.34	□□□□□ -0.43
NR1I3-231	ENST00000512340	CSRNP3	Q8WYN3	585 aa		12.34	□□□□□ -0.43
NR1I3-231	ENST00000512340	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.31	□□□□□ -0.44
NR1I3-231	ENST00000512340	JPH4	Q96JJ6	628 aa		12.3	□□□□□ -0.44
NR1I3-231	ENST00000512340	KIAA0586	Q9BVV6	1533 aa		12.3	□□□□□ -0.44
NR1I3-231	ENST00000512340	CEP170	Q5SW79	1584 aa		12.3	□□□□□ -0.44
NR1I3-231	ENST00000512340	RUSC2	Q8N2Y8	1516 aa		12.29	□□□□□ -0.44
NR1I3-231	ENST00000512340	CARMIL2	Q6F5E8	1435 aa		12.26	□□□□□ -0.45
NR1I3-231	ENST00000512340	PRX	Q9BXM0	1461 aa		12.25	□□□□□ -0.45
NR1I3-231	ENST00000512340	PRG4	Q92954	1404 aa	Predicted RBP	12.24	□□□□□ -0.45
NR1I3-231	ENST00000512340	SHROOM2	Q13796	1616 aa		12.22	□□□□□ -0.45
NR1I3-231	ENST00000512340	IQGAP2	Q13576	1575 aa		12.22	□□□□□ -0.45
NR1I3-231	ENST00000512340	GOLGA3	Q08378	1498 aa		12.19	□□□□□ -0.46
NR1I3-231	ENST00000512340	NPM1	P06748	294 aa	Known RBP eCLIP	12.18	□□□□□ -0.46
NR1I3-231	ENST00000512340	UBTF	P17480	764 aa	Known RBP	12.18	□□□□□ -0.46
NR1I3-231	ENST00000512340	KIF21B	O75037	1637 aa		12.16	□□□□□ -0.46
NR1I3-231	ENST00000512340	TNIK	Q9UKE5	1360 aa		12.16	□□□□□ -0.46
NR1I3-231	ENST00000512340	CTTNBP2	Q8WZ74	1663 aa		12.16	□□□□□ -0.46
NR1I3-231	ENST00000512340	PTPRG	P23470	1445 aa		12.14	□□□□□ -0.47
NR1I3-231	ENST00000512340	UGGT2	Q9NYU1	1516 aa		12.14	□□□□□ -0.47
NR1I3-231	ENST00000512340	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.11	□□□□□ -0.47
NR1I3-231	ENST00000512340	ERCC6L2	Q5T890	1561 aa		12.1	□□□□□ -0.47
NR1I3-231	ENST00000512340	EHMT2	Q96KQ7	1210 aa		12.08	□□□□□ -0.48
NR1I3-231	ENST00000512340	KIF13A	Q9H1H9	1805 aa		12.07	□□□□□ -0.48
NR1I3-231	ENST00000512340	RANGAP1	P46060	587 aa	Predicted RBP	12.07	□□□□□ -0.48
NR1I3-231	ENST00000512340	KIAA0556	O60303	1618 aa		12.07	□□□□□ -0.48
NR1I3-231	ENST00000512340	DISP1	Q96F81	1524 aa		12.06	□□□□□ -0.48
NR1I3-231	ENST00000512340	MAPKBP1	O60336	1514 aa		12.05	□□□□□ -0.48
NR1I3-231	ENST00000512340	UACA	Q9BZF9	1416 aa		12.04	□□□□□ -0.48
NR1I3-231	ENST00000512340	ABCC10	Q5T3U5	1492 aa		12.04	□□□□□ -0.48
NR1I3-231	ENST00000512340	EFCAB5	A4FU69	1503 aa		12.03	□□□□□ -0.48
NR1I3-231	ENST00000512340	P3H3	Q8IVL6	736 aa		12.02	□□□□□ -0.49
NR1I3-231	ENST00000512340	UHRF1BP1L	A0JNW5	1464 aa		12.01	□□□□□ -0.49
NR1I3-231	ENST00000512340	FAM69C	Q0P6D2	419 aa		12	□□□□□ -0.49
NR1I3-231	ENST00000512340	ABCC2	Q92887	1545 aa		11.99	□□□□□ -0.49
NR1I3-231	ENST00000512340	SAMD9	Q5K651	1589 aa		11.98	□□□□□ -0.49
NR1I3-231	ENST00000512340	DIP2B	Q9P265	1576 aa		11.97	□□□□□ -0.49
NR1I3-231	ENST00000512340	KDM6B	O15054	1643 aa		11.97	□□□□□ -0.49
NR1I3-231	ENST00000512340	ADCY10	Q96PN6	1610 aa		11.97	□□□□□ -0.49
NR1I3-231	ENST00000512340	FMN1	Q68DA7	1419 aa		11.96	□□□□□ -0.49
NR1I3-231	ENST00000512340	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.96	□□□□□ -0.49
NR1I3-231	ENST00000512340	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.96	□□□□□ -0.49
NR1I3-231	ENST00000512340	PLB1	Q6P1J6	1458 aa		11.95	□□□□□ -0.5
NR1I3-231	ENST00000512340	FHOD3	Q2V2M9	1422 aa		11.94	□□□□□ -0.5
NR1I3-231	ENST00000512340	KDM5B	Q9UGL1	1544 aa		11.92	□□□□□ -0.5
NR1I3-231	ENST00000512340	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.92	□□□□□ -0.5
NR1I3-231	ENST00000512340	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.92	□□□□□ -0.5
NR1I3-231	ENST00000512340	CLIP1	P30622	1438 aa		11.92	□□□□□ -0.5
NR1I3-231	ENST00000512340	ABCA8	O94911	1581 aa		11.92	□□□□□ -0.5
NR1I3-231	ENST00000512340	RAPGEF6	Q8TEU7	1601 aa		11.9	□□□□□ -0.5
NR1I3-231	ENST00000512340	ASXL2	Q76L83	1435 aa		11.9	□□□□□ -0.5
NR1I3-231	ENST00000512340	PLEKHD1	A6NEE1	506 aa		11.89	□□□□□ -0.51
NR1I3-231	ENST00000512340	ARHGAP35	Q9NRY4	1499 aa		11.89	□□□□□ -0.51
NR1I3-231	ENST00000512340	KDM4F	A0A1W2PPD8	638 aa		11.88	□□□□□ -0.51
NR1I3-231	ENST00000512340	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.87	□□□□□ -0.51
NR1I3-231	ENST00000512340	ARID3C	A6NKF2	412 aa		11.86	□□□□□ -0.51
NR1I3-231	ENST00000512340	KCNH8	Q96L42	1107 aa		11.86	□□□□□ -0.51
NR1I3-231	ENST00000512340	WDR7	Q9Y4E6	1490 aa		11.86	□□□□□ -0.51
NR1I3-231	ENST00000512340	CEP162	Q5TB80	1403 aa		11.86	□□□□□ -0.51
NR1I3-231	ENST00000512340	LOC105371045	A0A1W2PR82	267 aa		11.85	□□□□□ -0.51
NR1I3-231	ENST00000512340	HECW1	Q76N89	1606 aa		11.85	□□□□□ -0.51
NR1I3-231	ENST00000512340	GLI2	P10070	1586 aa		11.84	□□□□□ -0.51
NR1I3-231	ENST00000512340	ATP10B	O94823	1461 aa		11.84	□□□□□ -0.51
NR1I3-231	ENST00000512340	TSPOAP1	O95153	1857 aa		11.83	□□□□□ -0.52
NR1I3-231	ENST00000512340	NUP153	P49790	1475 aa	Known RBP	11.83	□□□□□ -0.52
NR1I3-231	ENST00000512340	EPRS	P07814	1512 aa	Known RBP	11.81	□□□□□ -0.52
NR1I3-231	ENST00000512340	CASKIN1	Q8WXD9	1431 aa		11.81	□□□□□ -0.52
NR1I3-231	ENST00000512340	ILDR1	Q86SU0	546 aa	Predicted RBP	11.81	□□□□□ -0.52
NR1I3-231	ENST00000512340	CCDC18	Q5T9S5	1454 aa		11.81	□□□□□ -0.52
NR1I3-231	ENST00000512340	TEX14	Q8IWB6	1497 aa		11.81	□□□□□ -0.52
NR1I3-231	ENST00000512340	FYCO1	Q9BQS8	1478 aa		11.8	□□□□□ -0.52
NR1I3-231	ENST00000512340	APLP2	Q06481	763 aa		11.79	□□□□□ -0.52
NR1I3-231	ENST00000512340	ADGRL1	O94910	1474 aa		11.78	□□□□□ -0.52
NR1I3-231	ENST00000512340	CD109	Q6YHK3	1445 aa		11.77	□□□□□ -0.52
NR1I3-231	ENST00000512340	PHLDB1	Q86UU1	1377 aa		11.75	□□□□□ -0.53
NR1I3-231	ENST00000512340	PPRC1	Q5VV67	1664 aa	Known RBP	11.75	□□□□□ -0.53
NR1I3-231	ENST00000512340	CFAP43	Q8NDM7	1665 aa		11.75	□□□□□ -0.53
NR1I3-231	ENST00000512340	CDK13	Q14004	1512 aa	Known RBP	11.74	□□□□□ -0.53
NR1I3-231	ENST00000512340	PCF11	O94913	1555 aa	Known RBP	11.74	□□□□□ -0.53
NR1I3-231	ENST00000512340	MAP3K4	Q9Y6R4	1608 aa		11.72	□□□□□ -0.53
NR1I3-231	ENST00000512340	MAGI3	Q5TCQ9	1506 aa		11.72	□□□□□ -0.53
NR1I3-231	ENST00000512340	TRO	Q12816	1431 aa	Predicted RBP	11.72	□□□□□ -0.53
NR1I3-231	ENST00000512340	VPS8	Q8N3P4	1428 aa		11.72	□□□□□ -0.53
NR1I3-231	ENST00000512340	MTUS2	Q5JR59	1369 aa		11.72	□□□□□ -0.53
NR1I3-231	ENST00000512340	ABCA9	Q8IUA7	1624 aa		11.71	□□□□□ -0.54
NR1I3-231	ENST00000512340	HECW2	Q9P2P5	1572 aa		11.7	□□□□□ -0.54
NR1I3-231	ENST00000512340	KIF14	Q15058	1648 aa		11.69	□□□□□ -0.54
NR1I3-231	ENST00000512340	EFCAB2	Q5VUJ9	269 aa		11.69	□□□□□ -0.54
NR1I3-231	ENST00000512340	NEO1	Q92859	1461 aa		11.67	□□□□□ -0.54
NR1I3-231	ENST00000512340	CFAP74	Q9C0B2	1584 aa		11.67	□□□□□ -0.54
NR1I3-231	ENST00000512340	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.65	□□□□□ -0.54
NR1I3-231	ENST00000512340	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.65	□□□□□ -0.55
NR1I3-231	ENST00000512340	PLCH2	O75038	1416 aa		11.64	□□□□□ -0.55
NR1I3-231	ENST00000512340	CCNB3	Q8WWL7	1395 aa		11.64	□□□□□ -0.55
NR1I3-231	ENST00000512340	FANCA	O15360	1455 aa		11.63	□□□□□ -0.55
NR1I3-231	ENST00000512340	MAP3K1	Q13233	1512 aa		11.63	□□□□□ -0.55
NR1I3-231	ENST00000512340	EHBP1L1	Q8N3D4	1523 aa		11.63	□□□□□ -0.55
NR1I3-231	ENST00000512340	ARAP3	Q8WWN8	1544 aa		11.63	□□□□□ -0.55
NR1I3-231	ENST00000512340	MYO5C	Q9NQX4	1742 aa		11.62	□□□□□ -0.55
NR1I3-231	ENST00000512340	AKNA	Q7Z591	1439 aa		11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms