RNA–Protein interactions for RNA: ENST00000511125.1

SMAD1-209, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 3,293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-209ENST00000511125 CLIP1P30622 1438 aa12.76□□□□□ -0.37
SMAD1-209ENST00000511125 ADAMTS12P58397 1594 aa12.73□□□□□ -0.37
SMAD1-209ENST00000511125 SYNJ2O15056 1496 aa12.73□□□□□ -0.37
SMAD1-209ENST00000511125 GRIN2AQ12879 1464 aa12.72□□□□□ -0.37
SMAD1-209ENST00000511125 MAGI1Q96QZ7 1491 aaPredicted RBP12.72□□□□□ -0.37
SMAD1-209ENST00000511125 CUL7Q14999 1698 aa12.71□□□□□ -0.37
SMAD1-209ENST00000511125 JPH4Q96JJ6 628 aa12.71□□□□□ -0.37
SMAD1-209ENST00000511125 FHOD3Q2V2M9 1422 aa12.69□□□□□ -0.38
SMAD1-209ENST00000511125 OSCARQ8IYS5 282 aa12.68□□□□□ -0.38
SMAD1-209ENST00000511125 CHD1O14646 1710 aa12.65□□□□□ -0.38
SMAD1-209ENST00000511125 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.65□□□□□ -0.38
SMAD1-209ENST00000511125 HNRNPUL2Q1KMD3 747 aaKnown RBP12.65□□□□□ -0.38
SMAD1-209ENST00000511125 CEP170Q5SW79 1584 aa12.65□□□□□ -0.38
SMAD1-209ENST00000511125 APLP2Q06481 763 aa12.64□□□□□ -0.39
SMAD1-209ENST00000511125 ARHGAP35Q9NRY4 1499 aa12.64□□□□□ -0.39
SMAD1-209ENST00000511125 ARAP1Q96P48 1450 aa12.63□□□□□ -0.39
SMAD1-209ENST00000511125 KIAA0586Q9BVV6 1533 aa12.6□□□□□ -0.39
SMAD1-209ENST00000511125 IQGAP2Q13576 1575 aa12.59□□□□□ -0.39
SMAD1-209ENST00000511125 PRG4Q92954 1404 aaPredicted RBP12.59□□□□□ -0.39
SMAD1-209ENST00000511125 NUP160Q12769 1436 aa12.58□□□□□ -0.4
SMAD1-209ENST00000511125 CTTNBP2Q8WZ74 1663 aa12.57□□□□□ -0.4
SMAD1-209ENST00000511125 KANK4Q5T7N3 995 aaPredicted RBP12.56□□□□□ -0.4
SMAD1-209ENST00000511125 ERCC6L2Q5T890 1561 aa12.54□□□□□ -0.4
SMAD1-209ENST00000511125 PCGF6Q9BYE7 350 aa12.53□□□□□ -0.4
SMAD1-209ENST00000511125 VPS8Q8N3P4 1428 aa12.53□□□□□ -0.4
SMAD1-209ENST00000511125 CYB5RLQ6IPT4 315 aa12.53□□□□□ -0.4
SMAD1-209ENST00000511125 DISP1Q96F81 1524 aa12.52□□□□□ -0.41
SMAD1-209ENST00000511125 CARMIL2Q6F5E8 1435 aa12.51□□□□□ -0.41
SMAD1-209ENST00000511125 PTPRGP23470 1445 aa12.49□□□□□ -0.41
SMAD1-209ENST00000511125 PLB1Q6P1J6 1458 aa12.49□□□□□ -0.41
SMAD1-209ENST00000511125 UGGT2Q9NYU1 1516 aa12.46□□□□□ -0.41
SMAD1-209ENST00000511125 ITGAEP38570 1179 aa12.45□□□□□ -0.42
SMAD1-209ENST00000511125 KCNH8Q96L42 1107 aa12.45□□□□□ -0.42
SMAD1-209ENST00000511125 KIAA0556O60303 1618 aa12.45□□□□□ -0.42
SMAD1-209ENST00000511125 FMN1Q68DA7 1419 aa12.44□□□□□ -0.42
SMAD1-209ENST00000511125 EFCAB5A4FU69 1503 aa12.43□□□□□ -0.42
SMAD1-209ENST00000511125 PCF11O94913 1555 aaKnown RBP12.43□□□□□ -0.42
SMAD1-209ENST00000511125 SAMD9Q5K651 1589 aa12.43□□□□□ -0.42
SMAD1-209ENST00000511125 CLASP1Q7Z460 1538 aa12.42□□□□□ -0.42
SMAD1-209ENST00000511125 CDK13Q14004 1512 aaKnown RBP12.41□□□□□ -0.42
SMAD1-209ENST00000511125 MTUS2Q5JR59 1369 aa12.39□□□□□ -0.43
SMAD1-209ENST00000511125 CASKIN1Q8WXD9 1431 aa12.38□□□□□ -0.43
SMAD1-209ENST00000511125 FAM50AQ14320 339 aaKnown RBP12.36□□□□□ -0.43
SMAD1-209ENST00000511125 PLEKHD1A6NEE1 506 aa12.36□□□□□ -0.43
SMAD1-209ENST00000511125 TRIM26Q12899 539 aaPredicted RBP12.36□□□□□ -0.43
SMAD1-209ENST00000511125 ZNF777Q9ULD5 760 aaPredicted RBP12.36□□□□□ -0.43
SMAD1-209ENST00000511125 NPM1P06748 294 aaKnown RBP eCLIP12.35□□□□□ -0.43
SMAD1-209ENST00000511125 NUP153P49790 1475 aaKnown RBP12.34□□□□□ -0.43
SMAD1-209ENST00000511125 ARHGEF11O15085 1522 aa12.34□□□□□ -0.43
SMAD1-209ENST00000511125 UACAQ9BZF9 1416 aa12.34□□□□□ -0.43
SMAD1-209ENST00000511125 SHROOM2Q13796 1616 aa12.33□□□□□ -0.44
SMAD1-209ENST00000511125 EPRSP07814 1512 aaKnown RBP12.33□□□□□ -0.44
SMAD1-209ENST00000511125 FYCO1Q9BQS8 1478 aa12.33□□□□□ -0.44
SMAD1-209ENST00000511125 CDK11AQ9UQ88 783 aaPredicted RBP12.33□□□□□ -0.44
SMAD1-209ENST00000511125 RAPGEF6Q8TEU7 1601 aa12.31□□□□□ -0.44
SMAD1-209ENST00000511125 ATP10BO94823 1461 aa12.31□□□□□ -0.44
SMAD1-209ENST00000511125 TIAM1Q13009 1591 aa12.29□□□□□ -0.44
SMAD1-209ENST00000511125 LRRC9Q6ZRR7 1453 aa12.29□□□□□ -0.44
SMAD1-209ENST00000511125 LRRIQ1Q96JM4 1722 aa12.29□□□□□ -0.44
SMAD1-209ENST00000511125 PHLDB1Q86UU1 1377 aa12.28□□□□□ -0.44
SMAD1-209ENST00000511125 MAGI3Q5TCQ9 1506 aa12.28□□□□□ -0.44
SMAD1-209ENST00000511125 HECW1Q76N89 1606 aa12.27□□□□□ -0.44
SMAD1-209ENST00000511125 ZNF644Q9H582 1327 aaPredicted RBP12.27□□□□□ -0.45
SMAD1-209ENST00000511125 RIMBP3CA6NJZ7 1639 aa12.27□□□□□ -0.45
SMAD1-209ENST00000511125 RIMBP3BA6NNM3 1639 aa12.27□□□□□ -0.45
SMAD1-209ENST00000511125 RIMBP3Q9UFD9 1639 aa12.27□□□□□ -0.45
SMAD1-209ENST00000511125 ABCA8O94911 1581 aa12.26□□□□□ -0.45
SMAD1-209ENST00000511125 CHIC2Q9UKJ5 165 aa12.26□□□□□ -0.45
SMAD1-209ENST00000511125 ABCC2Q92887 1545 aa12.23□□□□□ -0.45
SMAD1-209ENST00000511125 DNAJC5Q9H3Z4 198 aa12.22□□□□□ -0.45
SMAD1-209ENST00000511125 CFDP1Q9UEE9 299 aaPredicted RBP12.22□□□□□ -0.45
SMAD1-209ENST00000511125 CCDC18Q5T9S5 1454 aa12.22□□□□□ -0.45
SMAD1-209ENST00000511125 NCOA2Q15596 1464 aa12.22□□□□□ -0.45
SMAD1-209ENST00000511125 ADCY10Q96PN6 1610 aa12.22□□□□□ -0.45
SMAD1-209ENST00000511125 CCNB3Q8WWL7 1395 aa12.21□□□□□ -0.45
SMAD1-209ENST00000511125 TRHP20396 242 aaPredicted RBP12.21□□□□□ -0.46
SMAD1-209ENST00000511125 TROQ12816 1431 aaPredicted RBP12.19□□□□□ -0.46
SMAD1-209ENST00000511125 FAM69CQ0P6D2 419 aa12.19□□□□□ -0.46
SMAD1-209ENST00000511125 HNRNPMP52272 730 aaKnown RBP eCLIP12.18□□□□□ -0.46
SMAD1-209ENST00000511125 MYT1LQ9UL68 1186 aa12.18□□□□□ -0.46
SMAD1-209ENST00000511125 ASXL2Q76L83 1435 aa12.18□□□□□ -0.46
SMAD1-209ENST00000511125 KIF14Q15058 1648 aa12.18□□□□□ -0.46
SMAD1-209ENST00000511125 CFAP43Q8NDM7 1665 aa12.17□□□□□ -0.46
SMAD1-209ENST00000511125 ZCCHC11Q5TAX3 1644 aaKnown RBP12.17□□□□□ -0.46
SMAD1-209ENST00000511125 RRP7BPQ9NSQ0 103 aa12.16□□□□□ -0.46
SMAD1-209ENST00000511125 EHBP1L1Q8N3D4 1523 aa12.14□□□□□ -0.47
SMAD1-209ENST00000511125 KDM5BQ9UGL1 1544 aa12.14□□□□□ -0.47
SMAD1-209ENST00000511125 MAP3K1Q13233 1512 aa12.14□□□□□ -0.47
SMAD1-209ENST00000511125 MYOM3Q5VTT5 1437 aa12.13□□□□□ -0.47
SMAD1-209ENST00000511125 UHRF1BP1LA0JNW5 1464 aa12.13□□□□□ -0.47
SMAD1-209ENST00000511125 FGD6Q6ZV73 1430 aa12.12□□□□□ -0.47
SMAD1-209ENST00000511125 SUPT6HQ7KZ85 1726 aaKnown RBP12.12□□□□□ -0.47
SMAD1-209ENST00000511125 WDR7Q9Y4E6 1490 aa12.1□□□□□ -0.47
SMAD1-209ENST00000511125 GPATCH8Q9UKJ3 1502 aaKnown RBP12.1□□□□□ -0.47
SMAD1-209ENST00000511125 AFAP1Q8N556 730 aa12.09□□□□□ -0.47
SMAD1-209ENST00000511125 EFCAB2Q5VUJ9 269 aa12.08□□□□□ -0.48
SMAD1-209ENST00000511125 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.07□□□□□ -0.48
SMAD1-209ENST00000511125 TTC37Q6PGP7 1564 aa12.07□□□□□ -0.48
SMAD1-209ENST00000511125 ARHGAP5Q13017 1502 aa12.07□□□□□ -0.48
SMAD1-209ENST00000511125 RRBP1Q9P2E9 1410 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms