RNA–Protein interactions for RNA: ENST00000509876.5

PHF3-210, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 7,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-210ENST00000509876 CEP162Q5TB80 1403 aa7.36□□□□□ -1.23
PHF3-210ENST00000509876 GRIN2BQ13224 1484 aa7.35□□□□□ -1.23
PHF3-210ENST00000509876 RAD54L2Q9Y4B4 1467 aa7.35□□□□□ -1.23
PHF3-210ENST00000509876 PEG3Q9GZU2 1588 aa7.35□□□□□ -1.23
PHF3-210ENST00000509876 CFDP1Q9UEE9 299 aaPredicted RBP7.34□□□□□ -1.23
PHF3-210ENST00000509876 DNMBPQ6XZF7 1577 aa7.34□□□□□ -1.23
PHF3-210ENST00000509876 JPH4Q96JJ6 628 aa7.34□□□□□ -1.23
PHF3-210ENST00000509876 CHGAP10645 457 aaKnown RBP7.34□□□□□ -1.24
PHF3-210ENST00000509876 AQRO60306 1485 aaKnown RBP eCLIP7.33□□□□□ -1.243e-7■■■□□ 16.4
PHF3-210ENST00000509876 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.33□□□□□ -1.247e-7■■□□□ 14
PHF3-210ENST00000509876 TOPBP1Q92547 1522 aa7.33□□□□□ -1.24
PHF3-210ENST00000509876 CCNB3Q8WWL7 1395 aa7.32□□□□□ -1.24
PHF3-210ENST00000509876 FMN1Q68DA7 1419 aa7.32□□□□□ -1.24
PHF3-210ENST00000509876 ZNF326Q5BKZ1 582 aaKnown RBP7.32□□□□□ -1.24
PHF3-210ENST00000509876 NEUROD1Q13562 356 aa7.32□□□□□ -1.24
PHF3-210ENST00000509876 CYB5RLQ6IPT4 315 aa7.32□□□□□ -1.24
PHF3-210ENST00000509876 ACIN1Q9UKV3 1341 aaKnown RBP7.32□□□□□ -1.24
PHF3-210ENST00000509876 CHIC2Q9UKJ5 165 aa7.31□□□□□ -1.24
PHF3-210ENST00000509876 PTPRGP23470 1445 aa7.3□□□□□ -1.24
PHF3-210ENST00000509876 POLA1P09884 1462 aaPredicted RBP7.27□□□□□ -1.25
PHF3-210ENST00000509876 SNAPC4Q5SXM2 1469 aa7.27□□□□□ -1.25
PHF3-210ENST00000509876 PPP1R15AO75807 674 aaPredicted RBP7.26□□□□□ -1.25
PHF3-210ENST00000509876 TOP2BQ02880 1626 aa7.25□□□□□ -1.25
PHF3-210ENST00000509876 EFCAB2Q5VUJ9 269 aa7.25□□□□□ -1.25
PHF3-210ENST00000509876 KANK1Q14678 1352 aa7.25□□□□□ -1.25
PHF3-210ENST00000509876 IGF1RP08069 1367 aa7.25□□□□□ -1.25
PHF3-210ENST00000509876 CUX1P39880 1505 aa7.25□□□□□ -1.25
PHF3-210ENST00000509876 PELP1Q8IZL8 1130 aaKnown RBP7.25□□□□□ -1.25
PHF3-210ENST00000509876 FHOD3Q2V2M9 1422 aa7.23□□□□□ -1.25
PHF3-210ENST00000509876 CCDC18Q5T9S5 1454 aa7.23□□□□□ -1.25
PHF3-210ENST00000509876 RRP7BPQ9NSQ0 103 aa7.22□□□□□ -1.25
PHF3-210ENST00000509876 SYNJ1O43426 1573 aa7.22□□□□□ -1.25
PHF3-210ENST00000509876 ARHGAP35Q9NRY4 1499 aa7.22□□□□□ -1.25
PHF3-210ENST00000509876 PRG4Q92954 1404 aaPredicted RBP7.22□□□□□ -1.25
PHF3-210ENST00000509876 MLECQ14165 292 aa7.21□□□□□ -1.25
PHF3-210ENST00000509876 MAGI1Q96QZ7 1491 aaPredicted RBP7.21□□□□□ -1.26
PHF3-210ENST00000509876 URB2Q14146 1524 aaKnown RBP7.2□□□□□ -1.26
PHF3-210ENST00000509876 ABCA10Q8WWZ4 1543 aa7.2□□□□□ -1.26
PHF3-210ENST00000509876 VPS8Q8N3P4 1428 aa7.2□□□□□ -1.26
PHF3-210ENST00000509876 SYNJ2O15056 1496 aa7.2□□□□□ -1.26
PHF3-210ENST00000509876 FAM69CQ0P6D2 419 aa7.2□□□□□ -1.26
PHF3-210ENST00000509876 TONSLQ96HA7 1378 aa7.2□□□□□ -1.26
PHF3-210ENST00000509876 HDGFP51858 240 aaKnown RBP7.19□□□□□ -1.26
PHF3-210ENST00000509876 C14orf37Q86TY3 774 aa7.19□□□□□ -1.26
PHF3-210ENST00000509876 CNGB1Q14028 1251 aaPredicted RBP7.19□□□□□ -1.26
PHF3-210ENST00000509876 PRDM2Q13029 1718 aa7.18□□□□□ -1.26
PHF3-210ENST00000509876 RSPH4AQ5TD94 716 aa7.18□□□□□ -1.26
PHF3-210ENST00000509876 AEBP2Q6ZN18 517 aaPredicted RBP7.18□□□□□ -1.26
PHF3-210ENST00000509876 RUSC2Q8N2Y8 1516 aa7.17□□□□□ -1.26
PHF3-210ENST00000509876 CUL7Q14999 1698 aa7.17□□□□□ -1.26
PHF3-210ENST00000509876 ERICH3Q5RHP9 1530 aa7.16□□□□□ -1.26
PHF3-210ENST00000509876 SPAG9O60271 1321 aaKnown RBP7.15□□□□□ -1.26
PHF3-210ENST00000509876 KIF21AQ7Z4S6 1674 aa7.15□□□□□ -1.26
PHF3-210ENST00000509876 GGT6Q6P531 493 aa7.15□□□□□ -1.27
PHF3-210ENST00000509876 NEFMP07197 916 aa7.15□□□□□ -1.27
PHF3-210ENST00000509876 CENPBP07199 599 aaPredicted RBP7.15□□□□□ -1.27
PHF3-210ENST00000509876 ANKRD30AQ9BXX3 1397 aa7.14□□□□□ -1.27
PHF3-210ENST00000509876 KIAA0586Q9BVV6 1533 aa7.14□□□□□ -1.27
PHF3-210ENST00000509876 GRIN2AQ12879 1464 aa7.14□□□□□ -1.27
PHF3-210ENST00000509876 WDR62O43379 1518 aa7.13□□□□□ -1.27
PHF3-210ENST00000509876 KIF21BO75037 1637 aa7.13□□□□□ -1.27
PHF3-210ENST00000509876 EFCAB5A4FU69 1503 aa7.13□□□□□ -1.27
PHF3-210ENST00000509876 KDM2AQ9Y2K7 1162 aa7.13□□□□□ -1.27
PHF3-210ENST00000509876 BIVM-ERCC5R4GMW8 1640 aa7.12□□□□□ -1.27
PHF3-210ENST00000509876 ZNF608Q9ULD9 1512 aaPredicted RBP7.12□□□□□ -1.27
PHF3-210ENST00000509876 SCAF1Q9H7N4 1312 aaKnown RBP7.12□□□□□ -1.27
PHF3-210ENST00000509876 HNRNPMP52272 730 aaKnown RBP eCLIP7.11□□□□□ -1.274e-7■■■■□ 20.1
PHF3-210ENST00000509876 IQGAP2Q13576 1575 aa7.11□□□□□ -1.27
PHF3-210ENST00000509876 NEFLP07196 543 aa7.11□□□□□ -1.27
PHF3-210ENST00000509876 KIF3BO15066 747 aa7.09□□□□□ -1.27
PHF3-210ENST00000509876 UACAQ9BZF9 1416 aa7.09□□□□□ -1.27
PHF3-210ENST00000509876 SENP3Q9H4L4 574 aaPredicted RBP7.09□□□□□ -1.27
PHF3-210ENST00000509876 WASHC2CQ9Y4E1 1318 aa7.09□□□□□ -1.28
PHF3-210ENST00000509876 RGL3Q3MIN7 710 aa7.08□□□□□ -1.28
PHF3-210ENST00000509876 HRCP23327 699 aa7.08□□□□□ -1.28
PHF3-210ENST00000509876 HAP1P54257 671 aaPredicted RBP7.08□□□□□ -1.28
PHF3-210ENST00000509876 HECW1Q76N89 1606 aa7.08□□□□□ -1.28
PHF3-210ENST00000509876 EID1Q9Y6B2 187 aa7.08□□□□□ -1.28
PHF3-210ENST00000509876 CASKIN1Q8WXD9 1431 aa7.08□□□□□ -1.28
PHF3-210ENST00000509876 ARHGAP5Q13017 1502 aa7.07□□□□□ -1.28
PHF3-210ENST00000509876 SLC24A1O60721 1099 aa7.07□□□□□ -1.28
PHF3-210ENST00000509876 KANK4Q5T7N3 995 aaPredicted RBP7.07□□□□□ -1.28
PHF3-210ENST00000509876 ANP32CO43423 234 aa7.07□□□□□ -1.28
PHF3-210ENST00000509876 YTHDC1Q96MU7 727 aaKnown RBP7.07□□□□□ -1.28
PHF3-210ENST00000509876 PRXQ9BXM0 1461 aa7.07□□□□□ -1.28
PHF3-210ENST00000509876 POGKQ9P215 609 aa7.06□□□□□ -1.28
PHF3-210ENST00000509876 FYCO1Q9BQS8 1478 aa7.06□□□□□ -1.28
PHF3-210ENST00000509876 WDR97A6NE52 1622 aa7.06□□□□□ -1.28
PHF3-210ENST00000509876 EIF4G3O43432 1585 aaKnown RBP7.05□□□□□ -1.28
PHF3-210ENST00000509876 CDCA8Q53HL2 280 aa7.04□□□□□ -1.28
PHF3-210ENST00000509876 NUP155O75694 1391 aa7.04□□□□□ -1.28
PHF3-210ENST00000509876 PLEKHH2Q8IVE3 1493 aa7.04□□□□□ -1.28
PHF3-210ENST00000509876 SETD5Q9C0A6 1442 aa7.04□□□□□ -1.28
PHF3-210ENST00000509876 POGZQ7Z3K3 1410 aa7.03□□□□□ -1.28
PHF3-210ENST00000509876 MYOM3Q5VTT5 1437 aa7.03□□□□□ -1.28
PHF3-210ENST00000509876 ADAMTS12P58397 1594 aa7.02□□□□□ -1.28
PHF3-210ENST00000509876 ZBTB7CA1YPR0 619 aa7.02□□□□□ -1.29
PHF3-210ENST00000509876 EHBP1L1Q8N3D4 1523 aa7.02□□□□□ -1.29
PHF3-210ENST00000509876 PKD2Q13563 968 aa7.02□□□□□ -1.29
PHF3-210ENST00000509876 TMC1Q8TDI8 760 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms