RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 CARMIL1Q5VZK9 1371 aa30.88■■■□□ 2.53
TPM3-220ENST00000509601 CUL7Q14999 1698 aa30.85■■■□□ 2.53
TPM3-220ENST00000509601 RUSC2Q8N2Y8 1516 aa30.83■■■□□ 2.53
TPM3-220ENST00000509601 KIAA0586Q9BVV6 1533 aa30.81■■■□□ 2.52
TPM3-220ENST00000509601 RAPGEF2Q9Y4G8 1499 aa30.58■■■□□ 2.49
TPM3-220ENST00000509601 IQGAP2Q13576 1575 aa30.49■■■□□ 2.47
TPM3-220ENST00000509601 PTPRGP23470 1445 aa30.48■■■□□ 2.47
TPM3-220ENST00000509601 NPM1P06748 294 aaKnown RBP eCLIP30.48■■■□□ 2.47
TPM3-220ENST00000509601 CARMIL2Q6F5E8 1435 aa30.47■■■□□ 2.47
TPM3-220ENST00000509601 TNIKQ9UKE5 1360 aa30.45■■■□□ 2.47
TPM3-220ENST00000509601 ADCY10Q96PN6 1610 aa30.44■■■□□ 2.46
TPM3-220ENST00000509601 TTBK1Q5TCY1 1321 aaPredicted RBP30.43■■■□□ 2.46
TPM3-220ENST00000509601 DISP1Q96F81 1524 aa30.4■■■□□ 2.46
TPM3-220ENST00000509601 PRXQ9BXM0 1461 aa30.39■■■□□ 2.46
TPM3-220ENST00000509601 UGGT2Q9NYU1 1516 aa30.36■■■□□ 2.45
TPM3-220ENST00000509601 MAPKBP1O60336 1514 aa30.34■■■□□ 2.45
TPM3-220ENST00000509601 FAM69CQ0P6D2 419 aa30.33■■■□□ 2.45
TPM3-220ENST00000509601 KIF13AQ9H1H9 1805 aa30.33■■■□□ 2.45
TPM3-220ENST00000509601 ABCC10Q5T3U5 1492 aa30.31■■■□□ 2.44
TPM3-220ENST00000509601 CSRNP3Q8WYN3 585 aa30.31■■■□□ 2.44
TPM3-220ENST00000509601 UACAQ9BZF9 1416 aa30.24■■■□□ 2.43
TPM3-220ENST00000509601 UHRF1BP1LA0JNW5 1464 aa30.23■■■□□ 2.43
TPM3-220ENST00000509601 ABCC2Q92887 1545 aa30.22■■■□□ 2.43
TPM3-220ENST00000509601 KIAA0556O60303 1618 aa30.22■■■□□ 2.43
TPM3-220ENST00000509601 CTTNBP2Q8WZ74 1663 aa30.2■■■□□ 2.42
TPM3-220ENST00000509601 DIP2BQ9P265 1576 aa30.19■■■□□ 2.42
TPM3-220ENST00000509601 EEA1Q15075 1411 aa30.12■■■□□ 2.41
TPM3-220ENST00000509601 GOLGA3Q08378 1498 aa30.12■■■□□ 2.41
TPM3-220ENST00000509601 ASXL2Q76L83 1435 aa30.11■■■□□ 2.41
TPM3-220ENST00000509601 KDM5BQ9UGL1 1544 aa30.1■■■□□ 2.41
TPM3-220ENST00000509601 CHIC1Q5VXU3 224 aa30.09■■■□□ 2.41
TPM3-220ENST00000509601 FAM9AQ8IZU1 332 aaPredicted RBP30.09■■■□□ 2.41
TPM3-220ENST00000509601 PLB1Q6P1J6 1458 aa30.07■■■□□ 2.4
TPM3-220ENST00000509601 P3H3Q8IVL6 736 aa30.02■■■□□ 2.4
TPM3-220ENST00000509601 TSPOAP1O95153 1857 aa29.96■■■□□ 2.39
TPM3-220ENST00000509601 ABCA8O94911 1581 aa29.96■■■□□ 2.39
TPM3-220ENST00000509601 GLI2P10070 1586 aa29.96■■■□□ 2.39
TPM3-220ENST00000509601 ZCCHC11Q5TAX3 1644 aaKnown RBP29.96■■■□□ 2.39
TPM3-220ENST00000509601 EPRSP07814 1512 aaKnown RBP29.92■■■□□ 2.38
TPM3-220ENST00000509601 SAMD9Q5K651 1589 aa29.86■■■□□ 2.37
TPM3-220ENST00000509601 RANGAP1P46060 587 aaPredicted RBP29.85■■■□□ 2.37
TPM3-220ENST00000509601 PPRC1Q5VV67 1664 aaKnown RBP29.83■■■□□ 2.37
TPM3-220ENST00000509601 WDR7Q9Y4E6 1490 aa29.83■■■□□ 2.37
TPM3-220ENST00000509601 KIF21BO75037 1637 aa29.82■■■□□ 2.36
TPM3-220ENST00000509601 KDM6BO15054 1643 aa29.81■■■□□ 2.36
TPM3-220ENST00000509601 KCNH8Q96L42 1107 aa29.8■■■□□ 2.36
TPM3-220ENST00000509601 ARID3CA6NKF2 412 aa29.79■■■□□ 2.36
TPM3-220ENST00000509601 ATP10BO94823 1461 aa29.78■■■□□ 2.36
TPM3-220ENST00000509601 MAP3K4Q9Y6R4 1608 aa29.77■■■□□ 2.36
TPM3-220ENST00000509601 AEBP2Q6ZN18 517 aaPredicted RBP29.76■■■□□ 2.35
TPM3-220ENST00000509601 EHMT2Q96KQ7 1210 aa29.74■■■□□ 2.35
TPM3-220ENST00000509601 FHOD3Q2V2M9 1422 aa29.72■■■□□ 2.35
TPM3-220ENST00000509601 COL17A1Q9UMD9 1497 aaPredicted RBP29.71■■■□□ 2.35
TPM3-220ENST00000509601 UBTFP17480 764 aaKnown RBP29.7■■■□□ 2.35
TPM3-220ENST00000509601 CD109Q6YHK3 1445 aa29.67■■■□□ 2.34
TPM3-220ENST00000509601 RAPGEF6Q8TEU7 1601 aa29.66■■■□□ 2.34
TPM3-220ENST00000509601 TEX14Q8IWB6 1497 aa29.66■■■□□ 2.34
TPM3-220ENST00000509601 NUP153P49790 1475 aaKnown RBP29.61■■■□□ 2.33
TPM3-220ENST00000509601 MAGI3Q5TCQ9 1506 aa29.61■■■□□ 2.33
TPM3-220ENST00000509601 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.6■■■□□ 2.33
TPM3-220ENST00000509601 HNRNPUL2Q1KMD3 747 aaKnown RBP29.6■■■□□ 2.33
TPM3-220ENST00000509601 EFCAB5A4FU69 1503 aa29.6■■■□□ 2.33
TPM3-220ENST00000509601 CFAP43Q8NDM7 1665 aa29.58■■■□□ 2.33
TPM3-220ENST00000509601 KDM4FA0A1W2PPD8 638 aa29.54■■■□□ 2.32
TPM3-220ENST00000509601 PLEKHD1A6NEE1 506 aa29.49■■■□□ 2.31
TPM3-220ENST00000509601 ARHGAP35Q9NRY4 1499 aa29.48■■■□□ 2.31
TPM3-220ENST00000509601 ABCA9Q8IUA7 1624 aa29.45■■■□□ 2.31
TPM3-220ENST00000509601 FMN1Q68DA7 1419 aa29.38■■■□□ 2.29
TPM3-220ENST00000509601 ARAP3Q8WWN8 1544 aa29.38■■■□□ 2.29
TPM3-220ENST00000509601 PHLDB1Q86UU1 1377 aa29.37■■■□□ 2.29
TPM3-220ENST00000509601 ATP1B4Q9UN42 357 aaPredicted RBP29.35■■■□□ 2.29
TPM3-220ENST00000509601 CDK13Q14004 1512 aaKnown RBP29.34■■■□□ 2.29
TPM3-220ENST00000509601 NEO1Q92859 1461 aa29.29■■■□□ 2.28
TPM3-220ENST00000509601 RAPGEF3O95398 923 aa29.29■■■□□ 2.28
TPM3-220ENST00000509601 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.26■■■□□ 2.273e-7■□□□□ 8.5
TPM3-220ENST00000509601 ADGRL1O94910 1474 aa29.25■■■□□ 2.27
TPM3-220ENST00000509601 HECW1Q76N89 1606 aa29.23■■■□□ 2.27
TPM3-220ENST00000509601 CDK11AQ9UQ88 783 aaPredicted RBP29.21■■■□□ 2.27
TPM3-220ENST00000509601 AKNAQ7Z591 1439 aa29.18■■■□□ 2.26
TPM3-220ENST00000509601 TTC37Q6PGP7 1564 aa29.18■■■□□ 2.26
TPM3-220ENST00000509601 FANCAO15360 1455 aa29.15■■■□□ 2.26
TPM3-220ENST00000509601 CASKIN1Q8WXD9 1431 aa29.14■■■□□ 2.26
TPM3-220ENST00000509601 PLCH2O75038 1416 aa29.13■■■□□ 2.25
TPM3-220ENST00000509601 CLIP1P30622 1438 aa29.12■■■□□ 2.25
TPM3-220ENST00000509601 LRRIQ1Q96JM4 1722 aa29.11■■■□□ 2.25
TPM3-220ENST00000509601 TROQ12816 1431 aaPredicted RBP29.11■■■□□ 2.25
TPM3-220ENST00000509601 FRMPD1Q5SYB0 1578 aa29.1■■■□□ 2.25
TPM3-220ENST00000509601 DENND4BO75064 1496 aaPredicted RBP29.1■■■□□ 2.25
TPM3-220ENST00000509601 EFCAB2Q5VUJ9 269 aa29.05■■■□□ 2.24
TPM3-220ENST00000509601 PCF11O94913 1555 aaKnown RBP29.05■■■□□ 2.24
TPM3-220ENST00000509601 KIF14Q15058 1648 aa29.04■■■□□ 2.24
TPM3-220ENST00000509601 CFAP74Q9C0B2 1584 aa29.03■■■□□ 2.24
TPM3-220ENST00000509601 RICTORQ6R327 1708 aa29.01■■■□□ 2.23
TPM3-220ENST00000509601 SCAPERQ9BY12 1400 aa29.01■■■□□ 2.23
TPM3-220ENST00000509601 CCDC18Q5T9S5 1454 aa29■■■□□ 2.23
TPM3-220ENST00000509601 FYCO1Q9BQS8 1478 aa28.97■■■□□ 2.23
TPM3-220ENST00000509601 MYO5CQ9NQX4 1742 aa28.94■■■□□ 2.22
TPM3-220ENST00000509601 ARID4BQ4LE39 1312 aaPredicted RBP28.92■■■□□ 2.22
TPM3-220ENST00000509601 ZMYM4Q5VZL5 1548 aa28.91■■■□□ 2.22
TPM3-220ENST00000509601 POGZQ7Z3K3 1410 aa28.91■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms