RNA–Protein interactions for RNA: ENST00000509409.5

TPM3-219, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 1,248 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-219ENST00000509409 SHROOM2Q13796 1616 aa26.64■■□□□ 1.85
TPM3-219ENST00000509409 NPM1P06748 294 aaKnown RBP eCLIP26.52■■□□□ 1.84
TPM3-219ENST00000509409 CARMIL1Q5VZK9 1371 aa26.52■■□□□ 1.84
TPM3-219ENST00000509409 RUSC2Q8N2Y8 1516 aa26.5■■□□□ 1.83
TPM3-219ENST00000509409 KIAA0586Q9BVV6 1533 aa26.5■■□□□ 1.83
TPM3-219ENST00000509409 CUL7Q14999 1698 aa26.47■■□□□ 1.83
TPM3-219ENST00000509409 TTBK1Q5TCY1 1321 aaPredicted RBP26.41■■□□□ 1.82
TPM3-219ENST00000509409 FAM69CQ0P6D2 419 aa26.36■■□□□ 1.81
TPM3-219ENST00000509409 PTPRGP23470 1445 aa26.32■■□□□ 1.8
TPM3-219ENST00000509409 CARMIL2Q6F5E8 1435 aa26.31■■□□□ 1.8
TPM3-219ENST00000509409 TNIKQ9UKE5 1360 aa26.26■■□□□ 1.79
TPM3-219ENST00000509409 ADCY10Q96PN6 1610 aa26.24■■□□□ 1.79
TPM3-219ENST00000509409 RAPGEF2Q9Y4G8 1499 aa26.23■■□□□ 1.79
TPM3-219ENST00000509409 ABCC10Q5T3U5 1492 aa26.23■■□□□ 1.79
TPM3-219ENST00000509409 IQGAP2Q13576 1575 aa26.2■■□□□ 1.79
TPM3-219ENST00000509409 MAPKBP1O60336 1514 aa26.19■■□□□ 1.78
TPM3-219ENST00000509409 KIF13AQ9H1H9 1805 aa26.17■■□□□ 1.78
TPM3-219ENST00000509409 DISP1Q96F81 1524 aa26.09■■□□□ 1.77
TPM3-219ENST00000509409 DIP2BQ9P265 1576 aa26.08■■□□□ 1.77
TPM3-219ENST00000509409 UACAQ9BZF9 1416 aa26.08■■□□□ 1.77
TPM3-219ENST00000509409 ABCC2Q92887 1545 aa26.07■■□□□ 1.76
TPM3-219ENST00000509409 UGGT2Q9NYU1 1516 aa26.04■■□□□ 1.76
TPM3-219ENST00000509409 UHRF1BP1LA0JNW5 1464 aa26.02■■□□□ 1.76
TPM3-219ENST00000509409 ASXL2Q76L83 1435 aa26.01■■□□□ 1.75
TPM3-219ENST00000509409 PLB1Q6P1J6 1458 aa26■■□□□ 1.75
TPM3-219ENST00000509409 PRXQ9BXM0 1461 aa25.95■■□□□ 1.74
TPM3-219ENST00000509409 KIAA0556O60303 1618 aa25.94■■□□□ 1.74
TPM3-219ENST00000509409 CSRNP3Q8WYN3 585 aa25.93■■□□□ 1.74
TPM3-219ENST00000509409 TSPOAP1O95153 1857 aa25.93■■□□□ 1.74
TPM3-219ENST00000509409 GOLGA3Q08378 1498 aa25.91■■□□□ 1.74
TPM3-219ENST00000509409 FAM9AQ8IZU1 332 aaPredicted RBP25.91■■□□□ 1.74
TPM3-219ENST00000509409 KDM5BQ9UGL1 1544 aa25.89■■□□□ 1.74
TPM3-219ENST00000509409 KDM6BO15054 1643 aa25.88■■□□□ 1.73
TPM3-219ENST00000509409 P3H3Q8IVL6 736 aa25.86■■□□□ 1.73
TPM3-219ENST00000509409 CTTNBP2Q8WZ74 1663 aa25.85■■□□□ 1.73
TPM3-219ENST00000509409 GLI2P10070 1586 aa25.84■■□□□ 1.73
TPM3-219ENST00000509409 EPRSP07814 1512 aaKnown RBP25.83■■□□□ 1.72
TPM3-219ENST00000509409 CHIC1Q5VXU3 224 aa25.8■■□□□ 1.72
TPM3-219ENST00000509409 KCNH8Q96L42 1107 aa25.8■■□□□ 1.72
TPM3-219ENST00000509409 ZCCHC11Q5TAX3 1644 aaKnown RBP25.8■■□□□ 1.72
TPM3-219ENST00000509409 ARID3CA6NKF2 412 aa25.75■■□□□ 1.71
TPM3-219ENST00000509409 RANGAP1P46060 587 aaPredicted RBP25.75■■□□□ 1.71
TPM3-219ENST00000509409 WDR7Q9Y4E6 1490 aa25.74■■□□□ 1.71
TPM3-219ENST00000509409 EEA1Q15075 1411 aa25.71■■□□□ 1.71
TPM3-219ENST00000509409 ABCA8O94911 1581 aa25.71■■□□□ 1.71
TPM3-219ENST00000509409 KDM4FA0A1W2PPD8 638 aa25.7■■□□□ 1.7
TPM3-219ENST00000509409 TEX14Q8IWB6 1497 aa25.7■■□□□ 1.7
TPM3-219ENST00000509409 PPRC1Q5VV67 1664 aaKnown RBP25.68■■□□□ 1.7
TPM3-219ENST00000509409 CD109Q6YHK3 1445 aa25.65■■□□□ 1.7
TPM3-219ENST00000509409 MAP3K4Q9Y6R4 1608 aa25.65■■□□□ 1.7
TPM3-219ENST00000509409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.64■■□□□ 1.7
TPM3-219ENST00000509409 HNRNPUL2Q1KMD3 747 aaKnown RBP25.64■■□□□ 1.7
TPM3-219ENST00000509409 COL17A1Q9UMD9 1497 aaPredicted RBP25.64■■□□□ 1.69
TPM3-219ENST00000509409 ATP10BO94823 1461 aa25.59■■□□□ 1.69
TPM3-219ENST00000509409 EHMT2Q96KQ7 1210 aa25.57■■□□□ 1.68
TPM3-219ENST00000509409 MAGI3Q5TCQ9 1506 aa25.53■■□□□ 1.68
TPM3-219ENST00000509409 SAMD9Q5K651 1589 aa25.52■■□□□ 1.68
TPM3-219ENST00000509409 FHOD3Q2V2M9 1422 aa25.51■■□□□ 1.67
TPM3-219ENST00000509409 UBTFP17480 764 aaKnown RBP25.5■■□□□ 1.67
TPM3-219ENST00000509409 CFAP43Q8NDM7 1665 aa25.48■■□□□ 1.67
TPM3-219ENST00000509409 RAPGEF6Q8TEU7 1601 aa25.46■■□□□ 1.67
TPM3-219ENST00000509409 PLEKHD1A6NEE1 506 aa25.44■■□□□ 1.66
TPM3-219ENST00000509409 ADGRL1O94910 1474 aa25.44■■□□□ 1.66
TPM3-219ENST00000509409 KIF21BO75037 1637 aa25.41■■□□□ 1.66
TPM3-219ENST00000509409 NUP153P49790 1475 aaKnown RBP25.4■■□□□ 1.66
TPM3-219ENST00000509409 ATP1B4Q9UN42 357 aaPredicted RBP25.37■■□□□ 1.65
TPM3-219ENST00000509409 PHLDB1Q86UU1 1377 aa25.36■■□□□ 1.65
TPM3-219ENST00000509409 EFCAB5A4FU69 1503 aa25.34■■□□□ 1.65
TPM3-219ENST00000509409 ARAP3Q8WWN8 1544 aa25.33■■□□□ 1.65
TPM3-219ENST00000509409 RAPGEF3O95398 923 aa25.33■■□□□ 1.65
TPM3-219ENST00000509409 ABCA9Q8IUA7 1624 aa25.33■■□□□ 1.65
TPM3-219ENST00000509409 NEO1Q92859 1461 aa25.27■■□□□ 1.64
TPM3-219ENST00000509409 FMN1Q68DA7 1419 aa25.2■■□□□ 1.63
TPM3-219ENST00000509409 CDK11AQ9UQ88 783 aaPredicted RBP25.19■■□□□ 1.62
TPM3-219ENST00000509409 ARID4BQ4LE39 1312 aaPredicted RBP25.18■■□□□ 1.62
TPM3-219ENST00000509409 CDK13Q14004 1512 aaKnown RBP25.17■■□□□ 1.62
TPM3-219ENST00000509409 ARHGAP35Q9NRY4 1499 aa25.17■■□□□ 1.62
TPM3-219ENST00000509409 AKNAQ7Z591 1439 aa25.17■■□□□ 1.62
TPM3-219ENST00000509409 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.14■■□□□ 1.623e-7■□□□□ 8.5
TPM3-219ENST00000509409 FANCAO15360 1455 aa25.14■■□□□ 1.61
TPM3-219ENST00000509409 DENND4BO75064 1496 aaPredicted RBP25.14■■□□□ 1.61
TPM3-219ENST00000509409 HECW1Q76N89 1606 aa25.07■■□□□ 1.6
TPM3-219ENST00000509409 EFCAB2Q5VUJ9 269 aa25.06■■□□□ 1.6
TPM3-219ENST00000509409 TTC37Q6PGP7 1564 aa25.05■■□□□ 1.6
TPM3-219ENST00000509409 PLCH2O75038 1416 aa25.05■■□□□ 1.6
TPM3-219ENST00000509409 FRMPD1Q5SYB0 1578 aa25.04■■□□□ 1.6
TPM3-219ENST00000509409 CFAP74Q9C0B2 1584 aa25.03■■□□□ 1.6
TPM3-219ENST00000509409 SCAPERQ9BY12 1400 aa25.02■■□□□ 1.6
TPM3-219ENST00000509409 HECW2Q9P2P5 1572 aa25.01■■□□□ 1.59
TPM3-219ENST00000509409 CLIP1P30622 1438 aa24.99■■□□□ 1.59
TPM3-219ENST00000509409 TROQ12816 1431 aaPredicted RBP24.98■■□□□ 1.59
TPM3-219ENST00000509409 PTPRMP28827 1452 aa24.96■■□□□ 1.59
TPM3-219ENST00000509409 RICTORQ6R327 1708 aa24.95■■□□□ 1.58
TPM3-219ENST00000509409 MLECQ14165 292 aa24.94■■□□□ 1.58
TPM3-219ENST00000509409 PLPPR3Q6T4P5 718 aa24.94■■□□□ 1.58
TPM3-219ENST00000509409 MYT1LQ9UL68 1186 aa24.94■■□□□ 1.58
TPM3-219ENST00000509409 ADAMTSL3P82987 1691 aa24.94■■□□□ 1.58
TPM3-219ENST00000509409 YEATS2Q9ULM3 1422 aa24.93■■□□□ 1.58
TPM3-219ENST00000509409 ARHGEF40Q8TER5 1519 aa24.92■■□□□ 1.58
TPM3-219ENST00000509409 POGZQ7Z3K3 1410 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms