RNA–Protein interactions for RNA: ENST00000509333.5

PDLIM5-212, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 743 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-212ENST00000509333 CUL7Q14999 1698 aa27.33■■□□□ 1.97
PDLIM5-212ENST00000509333 PRG4Q92954 1404 aaPredicted RBP27.3■■□□□ 1.96
PDLIM5-212ENST00000509333 KIAA0586Q9BVV6 1533 aa27.3■■□□□ 1.96
PDLIM5-212ENST00000509333 SHROOM2Q13796 1616 aa27.3■■□□□ 1.96
PDLIM5-212ENST00000509333 RAPGEF2Q9Y4G8 1499 aa27.21■■□□□ 1.95
PDLIM5-212ENST00000509333 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
PDLIM5-212ENST00000509333 CSRNP3Q8WYN3 585 aa27.17■■□□□ 1.94
PDLIM5-212ENST00000509333 TRHP20396 242 aaPredicted RBP27.14■■□□□ 1.94
PDLIM5-212ENST00000509333 PRXQ9BXM0 1461 aa27.1■■□□□ 1.93
PDLIM5-212ENST00000509333 FAM9AQ8IZU1 332 aaPredicted RBP27.01■■□□□ 1.91
PDLIM5-212ENST00000509333 PTPRGP23470 1445 aa26.99■■□□□ 1.91
PDLIM5-212ENST00000509333 CARMIL2Q6F5E8 1435 aa26.99■■□□□ 1.91
PDLIM5-212ENST00000509333 IQGAP2Q13576 1575 aa26.99■■□□□ 1.91
PDLIM5-212ENST00000509333 EEA1Q15075 1411 aa26.98■■□□□ 1.91
PDLIM5-212ENST00000509333 TNIKQ9UKE5 1360 aa26.96■■□□□ 1.91
PDLIM5-212ENST00000509333 TTBK1Q5TCY1 1321 aaPredicted RBP26.95■■□□□ 1.91
PDLIM5-212ENST00000509333 NPM1P06748 294 aaKnown RBP eCLIP26.94■■□□□ 1.9
PDLIM5-212ENST00000509333 DISP1Q96F81 1524 aa26.92■■□□□ 1.9
PDLIM5-212ENST00000509333 UGGT2Q9NYU1 1516 aa26.91■■□□□ 1.9
PDLIM5-212ENST00000509333 ADCY10Q96PN6 1610 aa26.79■■□□□ 1.88
PDLIM5-212ENST00000509333 UACAQ9BZF9 1416 aa26.76■■□□□ 1.87
PDLIM5-212ENST00000509333 CTTNBP2Q8WZ74 1663 aa26.75■■□□□ 1.87
PDLIM5-212ENST00000509333 GOLGA3Q08378 1498 aa26.74■■□□□ 1.87
PDLIM5-212ENST00000509333 P3H3Q8IVL6 736 aa26.73■■□□□ 1.87
PDLIM5-212ENST00000509333 KIAA0556O60303 1618 aa26.72■■□□□ 1.87
PDLIM5-212ENST00000509333 FAM69CQ0P6D2 419 aa26.72■■□□□ 1.87
PDLIM5-212ENST00000509333 UHRF1BP1LA0JNW5 1464 aa26.72■■□□□ 1.87
PDLIM5-212ENST00000509333 MAPKBP1O60336 1514 aa26.67■■□□□ 1.86
PDLIM5-212ENST00000509333 ABCC2Q92887 1545 aa26.67■■□□□ 1.86
PDLIM5-212ENST00000509333 EHMT2Q96KQ7 1210 aa26.65■■□□□ 1.86
PDLIM5-212ENST00000509333 ABCC10Q5T3U5 1492 aa26.65■■□□□ 1.86
PDLIM5-212ENST00000509333 UBTFP17480 764 aaKnown RBP26.64■■□□□ 1.86
PDLIM5-212ENST00000509333 RANGAP1P46060 587 aaPredicted RBP26.64■■□□□ 1.86
PDLIM5-212ENST00000509333 KIF21BO75037 1637 aa26.62■■□□□ 1.85
PDLIM5-212ENST00000509333 PLB1Q6P1J6 1458 aa26.6■■□□□ 1.85
PDLIM5-212ENST00000509333 KDM5BQ9UGL1 1544 aa26.6■■□□□ 1.85
PDLIM5-212ENST00000509333 ASXL2Q76L83 1435 aa26.56■■□□□ 1.84
PDLIM5-212ENST00000509333 KIF13AQ9H1H9 1805 aa26.55■■□□□ 1.84
PDLIM5-212ENST00000509333 ABCA8O94911 1581 aa26.52■■□□□ 1.84
PDLIM5-212ENST00000509333 SAMD9Q5K651 1589 aa26.5■■□□□ 1.83
PDLIM5-212ENST00000509333 DIP2BQ9P265 1576 aa26.49■■□□□ 1.83
PDLIM5-212ENST00000509333 FHOD3Q2V2M9 1422 aa26.43■■□□□ 1.82
PDLIM5-212ENST00000509333 ARID3CA6NKF2 412 aa26.43■■□□□ 1.82
PDLIM5-212ENST00000509333 ZCCHC11Q5TAX3 1644 aaKnown RBP26.42■■□□□ 1.82
PDLIM5-212ENST00000509333 ATP10BO94823 1461 aa26.42■■□□□ 1.82
PDLIM5-212ENST00000509333 KCNH8Q96L42 1107 aa26.41■■□□□ 1.82
PDLIM5-212ENST00000509333 EPRSP07814 1512 aaKnown RBP26.39■■□□□ 1.82
PDLIM5-212ENST00000509333 GLI2P10070 1586 aa26.37■■□□□ 1.81
PDLIM5-212ENST00000509333 EFCAB5A4FU69 1503 aa26.34■■□□□ 1.81
PDLIM5-212ENST00000509333 WDR7Q9Y4E6 1490 aa26.34■■□□□ 1.81
PDLIM5-212ENST00000509333 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.32■■□□□ 1.8
PDLIM5-212ENST00000509333 HNRNPUL2Q1KMD3 747 aaKnown RBP26.32■■□□□ 1.8
PDLIM5-212ENST00000509333 ARHGAP35Q9NRY4 1499 aa26.3■■□□□ 1.8
PDLIM5-212ENST00000509333 TSPOAP1O95153 1857 aa26.28■■□□□ 1.8
PDLIM5-212ENST00000509333 NUP153P49790 1475 aaKnown RBP26.28■■□□□ 1.8
PDLIM5-212ENST00000509333 RAPGEF6Q8TEU7 1601 aa26.28■■□□□ 1.8
PDLIM5-212ENST00000509333 PLEKHD1A6NEE1 506 aa26.24■■□□□ 1.79
PDLIM5-212ENST00000509333 CD109Q6YHK3 1445 aa26.21■■□□□ 1.79
PDLIM5-212ENST00000509333 ATP1B4Q9UN42 357 aaPredicted RBP26.2■■□□□ 1.78
PDLIM5-212ENST00000509333 FMN1Q68DA7 1419 aa26.2■■□□□ 1.78
PDLIM5-212ENST00000509333 MAP3K4Q9Y6R4 1608 aa26.18■■□□□ 1.78
PDLIM5-212ENST00000509333 PPRC1Q5VV67 1664 aaKnown RBP26.18■■□□□ 1.78
PDLIM5-212ENST00000509333 COL17A1Q9UMD9 1497 aaPredicted RBP26.14■■□□□ 1.78
PDLIM5-212ENST00000509333 LOC105371045A0A1W2PR82 267 aa26.13■■□□□ 1.77
PDLIM5-212ENST00000509333 TEX14Q8IWB6 1497 aa26.12■■□□□ 1.77
PDLIM5-212ENST00000509333 MAGI3Q5TCQ9 1506 aa26.12■■□□□ 1.77
PDLIM5-212ENST00000509333 KDM6BO15054 1643 aa26.1■■□□□ 1.77
PDLIM5-212ENST00000509333 CLIP1P30622 1438 aa26.08■■□□□ 1.77
PDLIM5-212ENST00000509333 CFAP43Q8NDM7 1665 aa26.06■■□□□ 1.76
PDLIM5-212ENST00000509333 CDK11AQ9UQ88 783 aaPredicted RBP26.05■■□□□ 1.76
PDLIM5-212ENST00000509333 CDK13Q14004 1512 aaKnown RBP26.03■■□□□ 1.76
PDLIM5-212ENST00000509333 ABCA9Q8IUA7 1624 aa26.01■■□□□ 1.75
PDLIM5-212ENST00000509333 CASKIN1Q8WXD9 1431 aa26■■□□□ 1.75
PDLIM5-212ENST00000509333 PHLDB1Q86UU1 1377 aa25.98■■□□□ 1.75
PDLIM5-212ENST00000509333 HECW1Q76N89 1606 aa25.95■■□□□ 1.74
PDLIM5-212ENST00000509333 ARAP3Q8WWN8 1544 aa25.92■■□□□ 1.74
PDLIM5-212ENST00000509333 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.91■■□□□ 1.74
PDLIM5-212ENST00000509333 CEP162Q5TB80 1403 aa25.89■■□□□ 1.74
PDLIM5-212ENST00000509333 RAPGEF3O95398 923 aa25.89■■□□□ 1.74
PDLIM5-212ENST00000509333 NEO1Q92859 1461 aa25.88■■□□□ 1.73
PDLIM5-212ENST00000509333 TROQ12816 1431 aaPredicted RBP25.88■■□□□ 1.73
PDLIM5-212ENST00000509333 KDM4FA0A1W2PPD8 638 aa25.86■■□□□ 1.73
PDLIM5-212ENST00000509333 PLCH2O75038 1416 aa25.85■■□□□ 1.73
PDLIM5-212ENST00000509333 LRRIQ1Q96JM4 1722 aa25.84■■□□□ 1.73
PDLIM5-212ENST00000509333 AKNAQ7Z591 1439 aa25.83■■□□□ 1.73
PDLIM5-212ENST00000509333 FYCO1Q9BQS8 1478 aa25.83■■□□□ 1.73
PDLIM5-212ENST00000509333 PCF11O94913 1555 aaKnown RBP25.82■■□□□ 1.72
PDLIM5-212ENST00000509333 EFCAB2Q5VUJ9 269 aa25.82■■□□□ 1.72
PDLIM5-212ENST00000509333 CCDC18Q5T9S5 1454 aa25.82■■□□□ 1.72
PDLIM5-212ENST00000509333 FANCAO15360 1455 aa25.79■■□□□ 1.72
PDLIM5-212ENST00000509333 TTC37Q6PGP7 1564 aa25.79■■□□□ 1.72
PDLIM5-212ENST00000509333 KIF14Q15058 1648 aa25.74■■□□□ 1.71
PDLIM5-212ENST00000509333 DENND4BO75064 1496 aaPredicted RBP25.72■■□□□ 1.71
PDLIM5-212ENST00000509333 SCAPERQ9BY12 1400 aa25.7■■□□□ 1.7
PDLIM5-212ENST00000509333 ADGRL1O94910 1474 aa25.64■■□□□ 1.69
PDLIM5-212ENST00000509333 AFAP1Q8N556 730 aa25.63■■□□□ 1.69
PDLIM5-212ENST00000509333 MTUS2Q5JR59 1369 aa25.62■■□□□ 1.69
PDLIM5-212ENST00000509333 FRMPD1Q5SYB0 1578 aa25.61■■□□□ 1.69
PDLIM5-212ENST00000509333 CFAP74Q9C0B2 1584 aa25.61■■□□□ 1.69
PDLIM5-212ENST00000509333 MYO5CQ9NQX4 1742 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms