RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 ABCA5Q8WWZ7 1642 aa22.6■■□□□ 1.21
PHF3-209ENST00000509330 TARBP1Q13395 1621 aaKnown RBP22.58■■□□□ 1.2
PHF3-209ENST00000509330 CUL7Q14999 1698 aa22.57■■□□□ 1.2
PHF3-209ENST00000509330 ZNF608Q9ULD9 1512 aaPredicted RBP22.55■■□□□ 1.2
PHF3-209ENST00000509330 ITGAEP38570 1179 aa22.51■■□□□ 1.19
PHF3-209ENST00000509330 CTTNBP2Q8WZ74 1663 aa22.43■■□□□ 1.18
PHF3-209ENST00000509330 WDR62O43379 1518 aa22.43■■□□□ 1.18
PHF3-209ENST00000509330 PCF11O94913 1555 aaKnown RBP22.42■■□□□ 1.18
PHF3-209ENST00000509330 PBRM1Q86U86 1689 aa22.41■■□□□ 1.18
PHF3-209ENST00000509330 FHAD1B1AJZ9 1412 aa22.4■■□□□ 1.18
PHF3-209ENST00000509330 FBLN2P98095 1184 aa22.4■■□□□ 1.18
PHF3-209ENST00000509330 IFT140Q96RY7 1462 aa22.4■■□□□ 1.18
PHF3-209ENST00000509330 GRIN2BQ13224 1484 aa22.38■■□□□ 1.17
PHF3-209ENST00000509330 ARID3CA6NKF2 412 aa22.38■■□□□ 1.17
PHF3-209ENST00000509330 TIAM1Q13009 1591 aa22.37■■□□□ 1.17
PHF3-209ENST00000509330 EFCAB5A4FU69 1503 aa22.33■■□□□ 1.17
PHF3-209ENST00000509330 SNAPC4Q5SXM2 1469 aa22.32■■□□□ 1.16
PHF3-209ENST00000509330 ADAMTS12P58397 1594 aa22.32■■□□□ 1.16
PHF3-209ENST00000509330 LRRC9Q6ZRR7 1453 aa22.31■■□□□ 1.16
PHF3-209ENST00000509330 THOC2Q8NI27 1593 aaKnown RBP22.31■■□□□ 1.16
PHF3-209ENST00000509330 FAM50AQ14320 339 aaKnown RBP22.3■■□□□ 1.16
PHF3-209ENST00000509330 CCNB3Q8WWL7 1395 aa22.3■■□□□ 1.16
PHF3-209ENST00000509330 EIF4G3O43432 1585 aaKnown RBP22.29■■□□□ 1.16
PHF3-209ENST00000509330 PHLDB1Q86UU1 1377 aa22.28■■□□□ 1.16
PHF3-209ENST00000509330 FMN1Q68DA7 1419 aa22.27■■□□□ 1.16
PHF3-209ENST00000509330 CASKIN1Q8WXD9 1431 aa22.26■■□□□ 1.15
PHF3-209ENST00000509330 CHMP7Q8WUX9 453 aaPredicted RBP22.26■■□□□ 1.15
PHF3-209ENST00000509330 RRBP1Q9P2E9 1410 aaKnown RBP22.26■■□□□ 1.15
PHF3-209ENST00000509330 FYCO1Q9BQS8 1478 aa22.24■■□□□ 1.15
PHF3-209ENST00000509330 SAMD9Q5K651 1589 aa22.22■■□□□ 1.15
PHF3-209ENST00000509330 IQGAP2Q13576 1575 aa22.21■■□□□ 1.15
PHF3-209ENST00000509330 MTUS2Q5JR59 1369 aa22.19■■□□□ 1.14
PHF3-209ENST00000509330 MAP3K1Q13233 1512 aa22.18■■□□□ 1.14
PHF3-209ENST00000509330 CFAP43Q8NDM7 1665 aa22.18■■□□□ 1.14
PHF3-209ENST00000509330 GRIN2AQ12879 1464 aa22.15■■□□□ 1.14
PHF3-209ENST00000509330 LRRIQ1Q96JM4 1722 aa22.09■■□□□ 1.13
PHF3-209ENST00000509330 KIAA0586Q9BVV6 1533 aa22.07■■□□□ 1.12
PHF3-209ENST00000509330 DHX57Q6P158 1386 aaKnown RBP22.06■■□□□ 1.12
PHF3-209ENST00000509330 MAGI1Q96QZ7 1491 aaPredicted RBP22.06■■□□□ 1.12
PHF3-209ENST00000509330 SYNJ2O15056 1496 aa22.05■■□□□ 1.12
PHF3-209ENST00000509330 CDK13Q14004 1512 aaKnown RBP22.04■■□□□ 1.12
PHF3-209ENST00000509330 RAB3GAP2Q9H2M9 1393 aa22.03■■□□□ 1.12
PHF3-209ENST00000509330 CEP170Q5SW79 1584 aa22.02■■□□□ 1.12
PHF3-209ENST00000509330 DISP1Q96F81 1524 aa22.01■■□□□ 1.11
PHF3-209ENST00000509330 UGGT2Q9NYU1 1516 aa22■■□□□ 1.11
PHF3-209ENST00000509330 MAGI3Q5TCQ9 1506 aa22■■□□□ 1.11
PHF3-209ENST00000509330 NCOA2Q15596 1464 aa21.99■■□□□ 1.11
PHF3-209ENST00000509330 JPH4Q96JJ6 628 aa21.99■■□□□ 1.11
PHF3-209ENST00000509330 FGD6Q6ZV73 1430 aa21.97■■□□□ 1.11
PHF3-209ENST00000509330 KIAA0556O60303 1618 aa21.97■■□□□ 1.11
PHF3-209ENST00000509330 EPRSP07814 1512 aaKnown RBP21.97■■□□□ 1.11
PHF3-209ENST00000509330 HECW1Q76N89 1606 aa21.94■■□□□ 1.1
PHF3-209ENST00000509330 SETD5Q9C0A6 1442 aa21.92■■□□□ 1.1
PHF3-209ENST00000509330 CHIC2Q9UKJ5 165 aa21.91■■□□□ 1.1
PHF3-209ENST00000509330 CCDC18Q5T9S5 1454 aa21.91■■□□□ 1.1
PHF3-209ENST00000509330 EHBP1L1Q8N3D4 1523 aa21.9■■□□□ 1.1
PHF3-209ENST00000509330 PLB1Q6P1J6 1458 aa21.9■■□□□ 1.1
PHF3-209ENST00000509330 MYOM3Q5VTT5 1437 aa21.9■■□□□ 1.1
PHF3-209ENST00000509330 SUPT6HQ7KZ85 1726 aaKnown RBP21.88■■□□□ 1.09
PHF3-209ENST00000509330 NUP160Q12769 1436 aa21.88■■□□□ 1.09
PHF3-209ENST00000509330 PTPRKQ15262 1439 aa21.86■■□□□ 1.09
PHF3-209ENST00000509330 DIEXFQ68CQ4 756 aaKnown RBP21.86■■□□□ 1.09
PHF3-209ENST00000509330 NUP153P49790 1475 aaKnown RBP21.86■■□□□ 1.09
PHF3-209ENST00000509330 ZNF316A6NFI3 1004 aaPredicted RBP21.84■■□□□ 1.09
PHF3-209ENST00000509330 NEUROD1Q13562 356 aa21.84■■□□□ 1.09
PHF3-209ENST00000509330 CARMIL2Q6F5E8 1435 aa21.83■■□□□ 1.09
PHF3-209ENST00000509330 RRP7BPQ9NSQ0 103 aa21.83■■□□□ 1.08
PHF3-209ENST00000509330 RAPGEF6Q8TEU7 1601 aa21.81■■□□□ 1.08
PHF3-209ENST00000509330 SIN3AQ96ST3 1273 aa21.81■■□□□ 1.08
PHF3-209ENST00000509330 PRG4Q92954 1404 aaPredicted RBP21.79■■□□□ 1.08
PHF3-209ENST00000509330 ZNF644Q9H582 1327 aaPredicted RBP21.78■■□□□ 1.08
PHF3-209ENST00000509330 CLSPNQ9HAW4 1339 aa21.77■■□□□ 1.08
PHF3-209ENST00000509330 PTPN23Q9H3S7 1636 aa21.77■■□□□ 1.08
PHF3-209ENST00000509330 CDK11AQ9UQ88 783 aaPredicted RBP21.76■■□□□ 1.07
PHF3-209ENST00000509330 ZNF777Q9ULD5 760 aaPredicted RBP21.75■■□□□ 1.07
PHF3-209ENST00000509330 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.75■■□□□ 1.07
PHF3-209ENST00000509330 MAPKBP1O60336 1514 aa21.75■■□□□ 1.07
PHF3-209ENST00000509330 ARHGEF11O15085 1522 aa21.74■■□□□ 1.07
PHF3-209ENST00000509330 CHD1O14646 1710 aa21.73■■□□□ 1.07
PHF3-209ENST00000509330 PTPRGP23470 1445 aa21.67■■□□□ 1.06
PHF3-209ENST00000509330 NAIPQ13075 1403 aa21.67■■□□□ 1.06
PHF3-209ENST00000509330 TRIM52Q96A61 297 aa21.66■■□□□ 1.06
PHF3-209ENST00000509330 HFM1A2PYH4 1435 aa21.66■■□□□ 1.06
PHF3-209ENST00000509330 CFDP1Q9UEE9 299 aaPredicted RBP21.65■■□□□ 1.06
PHF3-209ENST00000509330 PLEKHD1A6NEE1 506 aa21.64■■□□□ 1.06
PHF3-209ENST00000509330 TROQ12816 1431 aaPredicted RBP21.64■■□□□ 1.06
PHF3-209ENST00000509330 KIF14Q15058 1648 aa21.62■■□□□ 1.05
PHF3-209ENST00000509330 TCOF1Q13428 1488 aaKnown RBP21.61■■□□□ 1.05
PHF3-209ENST00000509330 ERCC6L2Q5T890 1561 aa21.61■■□□□ 1.05
PHF3-209ENST00000509330 MIA2Q96PC5 1412 aa21.6■■□□□ 1.05
PHF3-209ENST00000509330 ATP10BO94823 1461 aa21.6■■□□□ 1.05
PHF3-209ENST00000509330 ABCA8O94911 1581 aa21.57■■□□□ 1.04
PHF3-209ENST00000509330 FOXD1Q16676 465 aa21.55■■□□□ 1.04
PHF3-209ENST00000509330 KDM6BO15054 1643 aa21.54■■□□□ 1.04
PHF3-209ENST00000509330 DAPK1P53355 1430 aa21.54■■□□□ 1.04
PHF3-209ENST00000509330 UACAQ9BZF9 1416 aa21.53■■□□□ 1.04
PHF3-209ENST00000509330 GPATCH8Q9UKJ3 1502 aaKnown RBP21.53■■□□□ 1.04
PHF3-209ENST00000509330 ABCC5O15440 1437 aa21.53■■□□□ 1.04
PHF3-209ENST00000509330 MIER1Q8N108 512 aa21.51■■□□□ 1.03
PHF3-209ENST00000509330 HIRIP3Q9BW71 556 aaPredicted RBP21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms