RNA–Protein interactions for RNA: ENST00000509092.5

PDGFRA-207, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,417 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-207ENST00000509092 CCDC88BA6NC98 1476 aa13.91□□□□□ -0.18
PDGFRA-207ENST00000509092 UBTFP17480 764 aaKnown RBP13.89□□□□□ -0.19
PDGFRA-207ENST00000509092 PPP4R2Q9NY27 417 aa13.88□□□□□ -0.19
PDGFRA-207ENST00000509092 VPS8Q8N3P4 1428 aa13.87□□□□□ -0.19
PDGFRA-207ENST00000509092 C11orf95C9JLR9 678 aaPredicted RBP13.86□□□□□ -0.19
PDGFRA-207ENST00000509092 SOGA1O94964 1423 aa13.86□□□□□ -0.19
PDGFRA-207ENST00000509092 DDX10Q13206 875 aaKnown RBP13.86□□□□□ -0.19
PDGFRA-207ENST00000509092 WASHC2AQ641Q2 1341 aa13.85□□□□□ -0.19
PDGFRA-207ENST00000509092 PPP1R15AO75807 674 aaPredicted RBP13.84□□□□□ -0.19
PDGFRA-207ENST00000509092 CLIP1P30622 1438 aa13.83□□□□□ -0.2
PDGFRA-207ENST00000509092 CUX2O14529 1486 aa13.83□□□□□ -0.2
PDGFRA-207ENST00000509092 IRX6P78412 446 aaPredicted RBP13.82□□□□□ -0.2
PDGFRA-207ENST00000509092 ANP32CO43423 234 aa13.81□□□□□ -0.2
PDGFRA-207ENST00000509092 IPO9Q96P70 1041 aaKnown RBP13.81□□□□□ -0.2
PDGFRA-207ENST00000509092 WASHC2CQ9Y4E1 1318 aa13.79□□□□□ -0.2
PDGFRA-207ENST00000509092 ANP32AP39687 249 aaKnown RBP13.79□□□□□ -0.2
PDGFRA-207ENST00000509092 ZBTB47Q9UFB7 747 aaPredicted RBP13.78□□□□□ -0.2
PDGFRA-207ENST00000509092 KIF21BO75037 1637 aa13.77□□□□□ -0.2
PDGFRA-207ENST00000509092 RUSC2Q8N2Y8 1516 aa13.76□□□□□ -0.21
PDGFRA-207ENST00000509092 USP35Q9P2H5 1018 aa13.75□□□□□ -0.21
PDGFRA-207ENST00000509092 WDR97A6NE52 1622 aa13.75□□□□□ -0.21
PDGFRA-207ENST00000509092 CEP164Q9UPV0 1460 aa13.74□□□□□ -0.21
PDGFRA-207ENST00000509092 MAPKBP1O60336 1514 aa13.73□□□□□ -0.21
PDGFRA-207ENST00000509092 RSPH6AQ9H0K4 717 aa13.72□□□□□ -0.21
PDGFRA-207ENST00000509092 HNRNPUQ00839 825 aaKnown RBP eCLIP13.71□□□□□ -0.22
PDGFRA-207ENST00000509092 B4GALNT3Q6L9W6 998 aa13.71□□□□□ -0.22
PDGFRA-207ENST00000509092 SLC24A1O60721 1099 aa13.7□□□□□ -0.22
PDGFRA-207ENST00000509092 RRBP1Q9P2E9 1410 aaKnown RBP13.7□□□□□ -0.22
PDGFRA-207ENST00000509092 GLIPR1L2Q4G1C9 344 aa13.68□□□□□ -0.22
PDGFRA-207ENST00000509092 BRPF3Q9ULD4 1205 aa13.66□□□□□ -0.22
PDGFRA-207ENST00000509092 NEFMP07197 916 aa13.65□□□□□ -0.22
PDGFRA-207ENST00000509092 CFTRP13569 1480 aa13.65□□□□□ -0.22
PDGFRA-207ENST00000509092 CADPSQ9ULU8 1353 aa13.65□□□□□ -0.22
PDGFRA-207ENST00000509092 PODXL2Q9NZ53 605 aa13.62□□□□□ -0.23
PDGFRA-207ENST00000509092 DAXXQ9UER7 740 aaPredicted RBP13.62□□□□□ -0.23
PDGFRA-207ENST00000509092 NESP48681 1621 aa13.61□□□□□ -0.23
PDGFRA-207ENST00000509092 PPM1GO15355 546 aaPredicted RBP13.61□□□□□ -0.23
PDGFRA-207ENST00000509092 TIMELESSQ9UNS1 1208 aa13.6□□□□□ -0.23
PDGFRA-207ENST00000509092 PRDM2Q13029 1718 aa13.59□□□□□ -0.23
PDGFRA-207ENST00000509092 PLEKHG5O94827 1062 aa13.59□□□□□ -0.23
PDGFRA-207ENST00000509092 LAMC3Q9Y6N6 1575 aa13.59□□□□□ -0.23
PDGFRA-207ENST00000509092 RAB3GAP2Q9H2M9 1393 aa13.58□□□□□ -0.24
PDGFRA-207ENST00000509092 GSE1Q14687 1217 aa13.58□□□□□ -0.24
PDGFRA-207ENST00000509092 FAM43AQ8N2R8 423 aa13.58□□□□□ -0.24
PDGFRA-207ENST00000509092 ZMYND15Q9H091 742 aa13.58□□□□□ -0.24
PDGFRA-207ENST00000509092 LAS1LQ9Y4W2 734 aaKnown RBP13.56□□□□□ -0.24
PDGFRA-207ENST00000509092 CCNB3Q8WWL7 1395 aa13.56□□□□□ -0.24
PDGFRA-207ENST00000509092 VSIG10Q8N0Z9 540 aa13.53□□□□□ -0.24
PDGFRA-207ENST00000509092 HIRIP3Q9BW71 556 aaPredicted RBP13.53□□□□□ -0.24
PDGFRA-207ENST00000509092 ZBED9Q6R2W3 1325 aa13.51□□□□□ -0.25
PDGFRA-207ENST00000509092 SYNJ1O43426 1573 aa13.51□□□□□ -0.25
PDGFRA-207ENST00000509092 FANCD2Q9BXW9 1451 aa13.5□□□□□ -0.25
PDGFRA-207ENST00000509092 KANK4Q5T7N3 995 aaPredicted RBP13.5□□□□□ -0.25
PDGFRA-207ENST00000509092 RAPGEF2Q9Y4G8 1499 aa13.49□□□□□ -0.25
PDGFRA-207ENST00000509092 SIN3AQ96ST3 1273 aa13.49□□□□□ -0.25
PDGFRA-207ENST00000509092 ARAP1Q96P48 1450 aa13.49□□□□□ -0.25
PDGFRA-207ENST00000509092 SETD5Q9C0A6 1442 aa13.49□□□□□ -0.25
PDGFRA-207ENST00000509092 PDS5BQ9NTI5 1447 aa13.48□□□□□ -0.25
PDGFRA-207ENST00000509092 FRAT1Q92837 279 aaPredicted RBP13.46□□□□□ -0.25
PDGFRA-207ENST00000509092 KIF21AQ7Z4S6 1674 aa13.46□□□□□ -0.25
PDGFRA-207ENST00000509092 NPM2Q86SE8 214 aaKnown RBP13.45□□□□□ -0.26
PDGFRA-207ENST00000509092 RNF123Q5XPI4 1314 aa13.44□□□□□ -0.26
PDGFRA-207ENST00000509092 SMG6Q86US8 1419 aaKnown RBP13.43□□□□□ -0.26
PDGFRA-207ENST00000509092 NFKBIBQ15653 356 aa13.41□□□□□ -0.26
PDGFRA-207ENST00000509092 TCERG1O14776 1098 aaKnown RBP13.41□□□□□ -0.26
PDGFRA-207ENST00000509092 DDRGK1Q96HY6 314 aa13.4□□□□□ -0.26
PDGFRA-207ENST00000509092 AKNAQ7Z591 1439 aa13.4□□□□□ -0.26
PDGFRA-207ENST00000509092 RRP9O43818 475 aaKnown RBP13.4□□□□□ -0.26
PDGFRA-207ENST00000509092 CUX1P39880 1505 aa13.39□□□□□ -0.27
PDGFRA-207ENST00000509092 FHAD1B1AJZ9 1412 aa13.39□□□□□ -0.27
PDGFRA-207ENST00000509092 PDE4AP27815 886 aa13.38□□□□□ -0.27
PDGFRA-207ENST00000509092 NCOA2Q15596 1464 aa13.38□□□□□ -0.27
PDGFRA-207ENST00000509092 TOP2BQ02880 1626 aa13.37□□□□□ -0.27
PDGFRA-207ENST00000509092 ERCC6Q03468 1493 aa13.37□□□□□ -0.27
PDGFRA-207ENST00000509092 HSP90AA2PQ14568 343 aaPredicted RBP13.37□□□□□ -0.27
PDGFRA-207ENST00000509092 BIVM-ERCC5R4GMW8 1640 aa13.37□□□□□ -0.27
PDGFRA-207ENST00000509092 RANGAP1P46060 587 aaPredicted RBP13.37□□□□□ -0.27
PDGFRA-207ENST00000509092 BACH2Q9BYV9 841 aa13.37□□□□□ -0.27
PDGFRA-207ENST00000509092 MS4A1P11836 297 aa13.36□□□□□ -0.27
PDGFRA-207ENST00000509092 CCDC184Q52MB2 194 aa13.36□□□□□ -0.27
PDGFRA-207ENST00000509092 ERICH3Q5RHP9 1530 aa13.36□□□□□ -0.27
PDGFRA-207ENST00000509092 CNTLNQ9NXG0 1405 aa13.36□□□□□ -0.27
PDGFRA-207ENST00000509092 DCAF11Q8TEB1 546 aa13.35□□□□□ -0.27
PDGFRA-207ENST00000509092 URB2Q14146 1524 aaKnown RBP13.35□□□□□ -0.27
PDGFRA-207ENST00000509092 FAM9BQ8IZU0 186 aa13.34□□□□□ -0.27
PDGFRA-207ENST00000509092 TONSLQ96HA7 1378 aa13.34□□□□□ -0.27
PDGFRA-207ENST00000509092 NUDCQ9Y266 331 aa13.34□□□□□ -0.27
PDGFRA-207ENST00000509092 DNMBPQ6XZF7 1577 aa13.33□□□□□ -0.27
PDGFRA-207ENST00000509092 TOPBP1Q92547 1522 aa13.33□□□□□ -0.28
PDGFRA-207ENST00000509092 RRAGDQ9NQL2 400 aaPredicted RBP13.32□□□□□ -0.28
PDGFRA-207ENST00000509092 MRC2Q9UBG0 1479 aa13.32□□□□□ -0.28
PDGFRA-207ENST00000509092 HSP90AA1P07900 732 aaKnown RBP13.31□□□□□ -0.28
PDGFRA-207ENST00000509092 MRS2Q9HD23 443 aa13.31□□□□□ -0.28
PDGFRA-207ENST00000509092 PRKRIP1Q9H875 184 aaPredicted RBP13.29□□□□□ -0.28
PDGFRA-207ENST00000509092 FGD5Q6ZNL6 1462 aa13.28□□□□□ -0.28
PDGFRA-207ENST00000509092 THOC2Q8NI27 1593 aaKnown RBP13.28□□□□□ -0.28
PDGFRA-207ENST00000509092 MAP3K1Q13233 1512 aa13.28□□□□□ -0.28
PDGFRA-207ENST00000509092 NAP1L5Q96NT1 182 aaPredicted RBP13.27□□□□□ -0.29
PDGFRA-207ENST00000509092 WDR62O43379 1518 aa13.26□□□□□ -0.29
PDGFRA-207ENST00000509092 KDM5BQ9UGL1 1544 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms