RNA–Protein interactions for RNA: ENST00000507875.5

CLCN3-206, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2

Gene CLCN3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-206ENST00000507875 DNAJC5Q9H3Z4 198 aa12.02□□□□□ -0.49
CLCN3-206ENST00000507875 SPOCK2Q92563 424 aa12□□□□□ -0.49
CLCN3-206ENST00000507875 SUPT5HO00267 1087 aaKnown RBP12□□□□□ -0.49
CLCN3-206ENST00000507875 C14orf37Q86TY3 774 aa12□□□□□ -0.49
CLCN3-206ENST00000507875 TOP2AP11388 1531 aaKnown RBP11.99□□□□□ -0.49
CLCN3-206ENST00000507875 HMGXB3Q12766 1538 aa11.96□□□□□ -0.49
CLCN3-206ENST00000507875 ATAD2BQ9ULI0 1458 aa11.95□□□□□ -0.5
CLCN3-206ENST00000507875 NCAPD3P42695 1498 aa11.93□□□□□ -0.5
CLCN3-206ENST00000507875 BAZ1BQ9UIG0 1483 aaKnown RBP11.89□□□□□ -0.51
CLCN3-206ENST00000507875 APLP2Q06481 763 aa11.87□□□□□ -0.51
CLCN3-206ENST00000507875 NKX1-1Q15270 411 aaPredicted RBP11.82□□□□□ -0.52
CLCN3-206ENST00000507875 PODXL2Q9NZ53 605 aa11.8□□□□□ -0.52
CLCN3-206ENST00000507875 CIZ1Q9ULV3 898 aaPredicted RBP11.8□□□□□ -0.52
CLCN3-206ENST00000507875 POLA2Q14181 598 aa11.79□□□□□ -0.52
CLCN3-206ENST00000507875 TRHP20396 242 aaPredicted RBP11.78□□□□□ -0.52
CLCN3-206ENST00000507875 RNF25Q96BH1 459 aaPredicted RBP11.78□□□□□ -0.52
CLCN3-206ENST00000507875 CCDC88BA6NC98 1476 aa11.77□□□□□ -0.53
CLCN3-206ENST00000507875 PLCD3Q8N3E9 789 aa11.75□□□□□ -0.53
CLCN3-206ENST00000507875 SPINK5Q9NQ38 1064 aaPredicted RBP11.74□□□□□ -0.53
CLCN3-206ENST00000507875 PRDM2Q13029 1718 aa11.74□□□□□ -0.53
CLCN3-206ENST00000507875 ERCC6Q03468 1493 aa11.72□□□□□ -0.53
CLCN3-206ENST00000507875 MYT1Q01538 1121 aa11.72□□□□□ -0.53
CLCN3-206ENST00000507875 ERICH6Q7L0X2 663 aa11.71□□□□□ -0.53
CLCN3-206ENST00000507875 TTBK1Q5TCY1 1321 aaPredicted RBP11.71□□□□□ -0.54
CLCN3-206ENST00000507875 HS6ST3Q8IZP7 471 aa11.7□□□□□ -0.54
CLCN3-206ENST00000507875 GTPBP6O43824 516 aaPredicted RBP11.68□□□□□ -0.54
CLCN3-206ENST00000507875 UBTFP17480 764 aaKnown RBP11.68□□□□□ -0.54
CLCN3-206ENST00000507875 BRPF1P55201 1214 aaPredicted RBP11.68□□□□□ -0.54
CLCN3-206ENST00000507875 MIER1Q8N108 512 aa11.66□□□□□ -0.54
CLCN3-206ENST00000507875 PELP1Q8IZL8 1130 aaKnown RBP11.65□□□□□ -0.54
CLCN3-206ENST00000507875 CUX2O14529 1486 aa11.64□□□□□ -0.55
CLCN3-206ENST00000507875 LAMC3Q9Y6N6 1575 aa11.64□□□□□ -0.55
CLCN3-206ENST00000507875 NESP48681 1621 aa11.63□□□□□ -0.55
CLCN3-206ENST00000507875 PDS5BQ9NTI5 1447 aa11.61□□□□□ -0.55
CLCN3-206ENST00000507875 CFTRP13569 1480 aa11.6□□□□□ -0.55
CLCN3-206ENST00000507875 CADPSQ9ULU8 1353 aa11.58□□□□□ -0.56
CLCN3-206ENST00000507875 TRIM26Q12899 539 aaPredicted RBP11.58□□□□□ -0.56
CLCN3-206ENST00000507875 LMOD2Q6P5Q4 547 aa11.55□□□□□ -0.56
CLCN3-206ENST00000507875 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.53□□□□□ -0.56
CLCN3-206ENST00000507875 ABCB7O75027 752 aa11.5□□□□□ -0.57
CLCN3-206ENST00000507875 KCNV2Q8TDN2 545 aa11.5□□□□□ -0.57
CLCN3-206ENST00000507875 HRCP23327 699 aa11.49□□□□□ -0.57
CLCN3-206ENST00000507875 THOC2Q8NI27 1593 aaKnown RBP11.49□□□□□ -0.57
CLCN3-206ENST00000507875 BIVM-ERCC5R4GMW8 1640 aa11.49□□□□□ -0.57
CLCN3-206ENST00000507875 ZNF692Q9BU19 519 aaPredicted RBP11.48□□□□□ -0.57
CLCN3-206ENST00000507875 STAG3Q9UJ98 1225 aa11.48□□□□□ -0.57
CLCN3-206ENST00000507875 KIF21AQ7Z4S6 1674 aa11.48□□□□□ -0.57
CLCN3-206ENST00000507875 NEUROD2Q15784 382 aa11.47□□□□□ -0.57
CLCN3-206ENST00000507875 STK25O00506 426 aa11.46□□□□□ -0.58
CLCN3-206ENST00000507875 MRC2Q9UBG0 1479 aa11.45□□□□□ -0.58
CLCN3-206ENST00000507875 TOP2BQ02880 1626 aa11.45□□□□□ -0.58
CLCN3-206ENST00000507875 CEP164Q9UPV0 1460 aa11.45□□□□□ -0.58
CLCN3-206ENST00000507875 RANGAP1P46060 587 aaPredicted RBP11.45□□□□□ -0.58
CLCN3-206ENST00000507875 TRIM41Q8WV44 630 aa11.45□□□□□ -0.58
CLCN3-206ENST00000507875 WRNQ14191 1432 aaPredicted RBP eCLIP11.44□□□□□ -0.58
CLCN3-206ENST00000507875 CADPS2Q86UW7 1296 aa11.44□□□□□ -0.58
CLCN3-206ENST00000507875 FANCD2Q9BXW9 1451 aa11.44□□□□□ -0.58
CLCN3-206ENST00000507875 ABCC8Q09428 1581 aa11.43□□□□□ -0.58
CLCN3-206ENST00000507875 CAPN15O75808 1086 aa11.43□□□□□ -0.58
CLCN3-206ENST00000507875 SLC24A3Q9HC58 644 aa11.43□□□□□ -0.58
CLCN3-206ENST00000507875 OSCARQ8IYS5 282 aa11.41□□□□□ -0.58
CLCN3-206ENST00000507875 WDR62O43379 1518 aa11.4□□□□□ -0.58
CLCN3-206ENST00000507875 SYNJ1O43426 1573 aa11.39□□□□□ -0.59
CLCN3-206ENST00000507875 DNMBPQ6XZF7 1577 aa11.38□□□□□ -0.59
CLCN3-206ENST00000507875 ZC3H15Q8WU90 426 aaKnown RBP11.37□□□□□ -0.59
CLCN3-206ENST00000507875 RIOK3O14730 519 aaKnown RBP11.36□□□□□ -0.59
CLCN3-206ENST00000507875 EEA1Q15075 1411 aa11.36□□□□□ -0.59
CLCN3-206ENST00000507875 ARID3AQ99856 593 aa11.36□□□□□ -0.59
CLCN3-206ENST00000507875 CUX1P39880 1505 aa11.36□□□□□ -0.59
CLCN3-206ENST00000507875 NPM2Q86SE8 214 aaKnown RBP11.34□□□□□ -0.59
CLCN3-206ENST00000507875 SSUH2Q9Y2M2 353 aa11.34□□□□□ -0.59
CLCN3-206ENST00000507875 BCL11BQ9C0K0 894 aaPredicted RBP11.32□□□□□ -0.6
CLCN3-206ENST00000507875 C1orf115Q9H7X2 142 aa11.3□□□□□ -0.6
CLCN3-206ENST00000507875 P3H3Q8IVL6 736 aa11.3□□□□□ -0.6
CLCN3-206ENST00000507875 TOPBP1Q92547 1522 aa11.3□□□□□ -0.6
CLCN3-206ENST00000507875 STK24Q9Y6E0 443 aa11.3□□□□□ -0.6
CLCN3-206ENST00000507875 URB2Q14146 1524 aaKnown RBP11.29□□□□□ -0.6
CLCN3-206ENST00000507875 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.28□□□□□ -0.6
CLCN3-206ENST00000507875 ZFP91Q96JP5 570 aaPredicted RBP11.28□□□□□ -0.6
CLCN3-206ENST00000507875 NUBP1P53384 320 aa11.27□□□□□ -0.61
CLCN3-206ENST00000507875 WDR97A6NE52 1622 aa11.26□□□□□ -0.61
CLCN3-206ENST00000507875 GPBP1L1Q9HC44 474 aaPredicted RBP11.26□□□□□ -0.61
CLCN3-206ENST00000507875 SEMA3EO15041 775 aa11.26□□□□□ -0.61
CLCN3-206ENST00000507875 FGD5Q6ZNL6 1462 aa11.24□□□□□ -0.61
CLCN3-206ENST00000507875 DCAF8Q5TAQ9 597 aa11.24□□□□□ -0.61
CLCN3-206ENST00000507875 IFT140Q96RY7 1462 aa11.22□□□□□ -0.61
CLCN3-206ENST00000507875 EIF5BO60841 1220 aaKnown RBP11.22□□□□□ -0.61
CLCN3-206ENST00000507875 ABCA10Q8WWZ4 1543 aa11.21□□□□□ -0.61
CLCN3-206ENST00000507875 ARID3CA6NKF2 412 aa11.21□□□□□ -0.61
CLCN3-206ENST00000507875 ZBTB47Q9UFB7 747 aaPredicted RBP11.21□□□□□ -0.61
CLCN3-206ENST00000507875 POLA1P09884 1462 aaPredicted RBP11.21□□□□□ -0.62
CLCN3-206ENST00000507875 KIF21BO75037 1637 aa11.2□□□□□ -0.62
CLCN3-206ENST00000507875 ZBTB12Q9Y330 459 aaPredicted RBP11.2□□□□□ -0.62
CLCN3-206ENST00000507875 KIF27Q86VH2 1401 aa11.2□□□□□ -0.62
CLCN3-206ENST00000507875 VGFO15240 615 aaPredicted RBP11.19□□□□□ -0.62
CLCN3-206ENST00000507875 GSE1Q14687 1217 aa11.19□□□□□ -0.62
CLCN3-206ENST00000507875 TARBP1Q13395 1621 aaKnown RBP11.18□□□□□ -0.62
CLCN3-206ENST00000507875 SPDYE2BA6NHP3 402 aa11.18□□□□□ -0.62
CLCN3-206ENST00000507875 SPDYE6P0CI01 402 aa11.18□□□□□ -0.62
CLCN3-206ENST00000507875 SPDYE2Q495Y8 402 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms