RNA–Protein interactions for RNA: ENST00000507162.1

VCAN-207, Transcript of versican, humanhuman

TSL 3

Gene VCAN, Length 766 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-207ENST00000507162 ADGRL1O94910 1474 aa13.53□□□□□ -0.24
VCAN-207ENST00000507162 CUX1P39880 1505 aa13.53□□□□□ -0.24
VCAN-207ENST00000507162 HECW2Q9P2P5 1572 aa13.52□□□□□ -0.25
VCAN-207ENST00000507162 PBRM1Q86U86 1689 aa13.52□□□□□ -0.25
VCAN-207ENST00000507162 NUP160Q12769 1436 aa13.51□□□□□ -0.25
VCAN-207ENST00000507162 TSPOAP1O95153 1857 aa13.5□□□□□ -0.25
VCAN-207ENST00000507162 DIP2BQ9P265 1576 aa13.46□□□□□ -0.25
VCAN-207ENST00000507162 MAPKBP1O60336 1514 aa13.44□□□□□ -0.26
VCAN-207ENST00000507162 LMTK3Q96Q04 1460 aa13.44□□□□□ -0.26
VCAN-207ENST00000507162 ABCA10Q8WWZ4 1543 aa13.44□□□□□ -0.26
VCAN-207ENST00000507162 SHROOM2Q13796 1616 aa13.43□□□□□ -0.26
VCAN-207ENST00000507162 TTBK1Q5TCY1 1321 aaPredicted RBP13.42□□□□□ -0.26
VCAN-207ENST00000507162 FHAD1B1AJZ9 1412 aa13.41□□□□□ -0.26
VCAN-207ENST00000507162 ABCA5Q8WWZ7 1642 aa13.4□□□□□ -0.26
VCAN-207ENST00000507162 ADAMTS12P58397 1594 aa13.37□□□□□ -0.27
VCAN-207ENST00000507162 SOCS7O14512 581 aa13.37□□□□□ -0.27
VCAN-207ENST00000507162 ILDR2Q71H61 639 aa13.36□□□□□ -0.27
VCAN-207ENST00000507162 ADCY10Q96PN6 1610 aa13.35□□□□□ -0.27
VCAN-207ENST00000507162 WRNQ14191 1432 aaPredicted RBP eCLIP13.32□□□□□ -0.28
VCAN-207ENST00000507162 COL17A1Q9UMD9 1497 aaPredicted RBP13.32□□□□□ -0.28
VCAN-207ENST00000507162 DISP3Q9P2K9 1392 aa13.3□□□□□ -0.28
VCAN-207ENST00000507162 PTPRGP23470 1445 aa13.26□□□□□ -0.29
VCAN-207ENST00000507162 ASXL2Q76L83 1435 aa13.26□□□□□ -0.29
VCAN-207ENST00000507162 PLB1Q6P1J6 1458 aa13.23□□□□□ -0.29
VCAN-207ENST00000507162 ERICH3Q5RHP9 1530 aa13.23□□□□□ -0.29
VCAN-207ENST00000507162 TOP2BQ02880 1626 aa13.21□□□□□ -0.29
VCAN-207ENST00000507162 PPRC1Q5VV67 1664 aaKnown RBP13.21□□□□□ -0.3
VCAN-207ENST00000507162 GLI2P10070 1586 aa13.19□□□□□ -0.3
VCAN-207ENST00000507162 ABCC2Q92887 1545 aa13.18□□□□□ -0.3
VCAN-207ENST00000507162 CERKQ8TCT0 537 aa13.18□□□□□ -0.3
VCAN-207ENST00000507162 RUSC2Q8N2Y8 1516 aa13.18□□□□□ -0.3
VCAN-207ENST00000507162 TEX14Q8IWB6 1497 aa13.17□□□□□ -0.3
VCAN-207ENST00000507162 KIAA0586Q9BVV6 1533 aa13.16□□□□□ -0.3
VCAN-207ENST00000507162 TNIKQ9UKE5 1360 aa13.14□□□□□ -0.31
VCAN-207ENST00000507162 EPRSP07814 1512 aaKnown RBP13.13□□□□□ -0.31
VCAN-207ENST00000507162 KCNH8Q96L42 1107 aa13.12□□□□□ -0.31
VCAN-207ENST00000507162 HSPA2P54652 639 aa13.11□□□□□ -0.31
VCAN-207ENST00000507162 PIAS4Q8N2W9 510 aaPredicted RBP13.11□□□□□ -0.31
VCAN-207ENST00000507162 PLPPR3Q6T4P5 718 aa13.1□□□□□ -0.31
VCAN-207ENST00000507162 CARMIL2Q6F5E8 1435 aa13.1□□□□□ -0.31
VCAN-207ENST00000507162 PTPRMP28827 1452 aa13.09□□□□□ -0.31
VCAN-207ENST00000507162 UACAQ9BZF9 1416 aa13.08□□□□□ -0.32
VCAN-207ENST00000507162 ARID4BQ4LE39 1312 aaPredicted RBP13.08□□□□□ -0.32
VCAN-207ENST00000507162 MAP3K4Q9Y6R4 1608 aa13.07□□□□□ -0.32
VCAN-207ENST00000507162 CUL7Q14999 1698 aa13.07□□□□□ -0.32
VCAN-207ENST00000507162 CD109Q6YHK3 1445 aa13.05□□□□□ -0.32
VCAN-207ENST00000507162 UHRF1BP1LA0JNW5 1464 aa13.04□□□□□ -0.32
VCAN-207ENST00000507162 IGF1RP08069 1367 aa13.04□□□□□ -0.32
VCAN-207ENST00000507162 KIF21BO75037 1637 aa13.03□□□□□ -0.32
VCAN-207ENST00000507162 BIVM-ERCC5R4GMW8 1640 aa13.02□□□□□ -0.32
VCAN-207ENST00000507162 PCF11O94913 1555 aaKnown RBP13.01□□□□□ -0.33
VCAN-207ENST00000507162 KDM5BQ9UGL1 1544 aa13□□□□□ -0.33
VCAN-207ENST00000507162 RAPGEF3O95398 923 aa12.97□□□□□ -0.33
VCAN-207ENST00000507162 WDR7Q9Y4E6 1490 aa12.97□□□□□ -0.33
VCAN-207ENST00000507162 SUPT5HO00267 1087 aaKnown RBP12.96□□□□□ -0.33
VCAN-207ENST00000507162 MAGI3Q5TCQ9 1506 aa12.96□□□□□ -0.33
VCAN-207ENST00000507162 ADAMTSL3P82987 1691 aa12.95□□□□□ -0.34
VCAN-207ENST00000507162 ZCCHC11Q5TAX3 1644 aaKnown RBP12.95□□□□□ -0.34
VCAN-207ENST00000507162 CARMIL1Q5VZK9 1371 aa12.94□□□□□ -0.34
VCAN-207ENST00000507162 SPATA31D1Q6ZQQ2 1576 aa12.94□□□□□ -0.34
VCAN-207ENST00000507162 KIF27Q86VH2 1401 aa12.91□□□□□ -0.34
VCAN-207ENST00000507162 DISP1Q96F81 1524 aa12.9□□□□□ -0.34
VCAN-207ENST00000507162 ARID3CA6NKF2 412 aa12.89□□□□□ -0.35
VCAN-207ENST00000507162 ARAP3Q8WWN8 1544 aa12.88□□□□□ -0.35
VCAN-207ENST00000507162 MADDQ8WXG6 1647 aa12.88□□□□□ -0.35
VCAN-207ENST00000507162 IQGAP2Q13576 1575 aa12.87□□□□□ -0.35
VCAN-207ENST00000507162 MLECQ14165 292 aa12.87□□□□□ -0.35
VCAN-207ENST00000507162 DMRT2Q9Y5R5 561 aa12.87□□□□□ -0.35
VCAN-207ENST00000507162 CFAP43Q8NDM7 1665 aa12.85□□□□□ -0.35
VCAN-207ENST00000507162 BCORL1Q5H9F3 1711 aa12.85□□□□□ -0.35
VCAN-207ENST00000507162 RIMS1Q86UR5 1692 aaKnown RBP12.83□□□□□ -0.36
VCAN-207ENST00000507162 PHLDB1Q86UU1 1377 aa12.82□□□□□ -0.36
VCAN-207ENST00000507162 YEATS2Q9ULM3 1422 aa12.79□□□□□ -0.36
VCAN-207ENST00000507162 CEBPAP49715 358 aaPredicted RBP12.78□□□□□ -0.36
VCAN-207ENST00000507162 POGZQ7Z3K3 1410 aa12.78□□□□□ -0.36
VCAN-207ENST00000507162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.77□□□□□ -0.37
VCAN-207ENST00000507162 HNRNPUL2Q1KMD3 747 aaKnown RBP12.77□□□□□ -0.37
VCAN-207ENST00000507162 FAM9AQ8IZU1 332 aaPredicted RBP12.77□□□□□ -0.37
VCAN-207ENST00000507162 UGGT2Q9NYU1 1516 aa12.77□□□□□ -0.37
VCAN-207ENST00000507162 KIAA0556O60303 1618 aa12.75□□□□□ -0.37
VCAN-207ENST00000507162 UBAP1LF5GYI3 381 aa12.74□□□□□ -0.37
VCAN-207ENST00000507162 P3H3Q8IVL6 736 aa12.72□□□□□ -0.37
VCAN-207ENST00000507162 PPP6R1Q9UPN7 881 aa12.72□□□□□ -0.37
VCAN-207ENST00000507162 NEO1Q92859 1461 aa12.71□□□□□ -0.38
VCAN-207ENST00000507162 FANCAO15360 1455 aa12.7□□□□□ -0.38
VCAN-207ENST00000507162 AKNAQ7Z591 1439 aa12.7□□□□□ -0.38
VCAN-207ENST00000507162 ABCA8O94911 1581 aa12.69□□□□□ -0.38
VCAN-207ENST00000507162 DENND4BO75064 1496 aaPredicted RBP12.68□□□□□ -0.38
VCAN-207ENST00000507162 ATP10BO94823 1461 aa12.68□□□□□ -0.38
VCAN-207ENST00000507162 RAPGEF2Q9Y4G8 1499 aa12.68□□□□□ -0.38
VCAN-207ENST00000507162 SCAF1Q9H7N4 1312 aaKnown RBP12.66□□□□□ -0.38
VCAN-207ENST00000507162 FRMPD1Q5SYB0 1578 aa12.66□□□□□ -0.38
VCAN-207ENST00000507162 PTPRTO14522 1441 aa12.66□□□□□ -0.38
VCAN-207ENST00000507162 STRCQ7RTU9 1775 aa12.66□□□□□ -0.38
VCAN-207ENST00000507162 GOLGA3Q08378 1498 aa12.65□□□□□ -0.38
VCAN-207ENST00000507162 UHRF1BP1Q6BDS2 1440 aa12.65□□□□□ -0.38
VCAN-207ENST00000507162 ARHGEF40Q8TER5 1519 aa12.64□□□□□ -0.39
VCAN-207ENST00000507162 ABCA9Q8IUA7 1624 aa12.64□□□□□ -0.39
VCAN-207ENST00000507162 ADRA2BP18089 450 aa12.64□□□□□ -0.39
VCAN-207ENST00000507162 HSPA1LP34931 641 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms