RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 EEA1Q15075 1411 aa28.03■■■□□ 2.08
SNCA-209ENST00000506244 CHIC1Q5VXU3 224 aa27.98■■■□□ 2.07
SNCA-209ENST00000506244 CYB5RLQ6IPT4 315 aa27.98■■■□□ 2.07
SNCA-209ENST00000506244 JPH4Q96JJ6 628 aa27.94■■■□□ 2.06
SNCA-209ENST00000506244 PRXQ9BXM0 1461 aa27.94■■■□□ 2.06
SNCA-209ENST00000506244 PRG4Q92954 1404 aaPredicted RBP27.93■■■□□ 2.06
SNCA-209ENST00000506244 ERCC6L2Q5T890 1561 aa27.93■■■□□ 2.06
SNCA-209ENST00000506244 IQGAP2Q13576 1575 aa27.92■■■□□ 2.06
SNCA-209ENST00000506244 CSRNP3Q8WYN3 585 aa27.86■■■□□ 2.05
SNCA-209ENST00000506244 CTTNBP2Q8WZ74 1663 aa27.84■■■□□ 2.05
SNCA-209ENST00000506244 CARMIL2Q6F5E8 1435 aa27.78■■■□□ 2.04
SNCA-209ENST00000506244 UGGT2Q9NYU1 1516 aa27.75■■■□□ 2.03
SNCA-209ENST00000506244 KIF21BO75037 1637 aa27.71■■■□□ 2.03
SNCA-209ENST00000506244 FAM9AQ8IZU1 332 aaPredicted RBP27.7■■■□□ 2.02
SNCA-209ENST00000506244 DISP1Q96F81 1524 aa27.66■■■□□ 2.02
SNCA-209ENST00000506244 TNIKQ9UKE5 1360 aa27.65■■■□□ 2.02
SNCA-209ENST00000506244 KIAA0556O60303 1618 aa27.65■■■□□ 2.02
SNCA-209ENST00000506244 GOLGA3Q08378 1498 aa27.64■■■□□ 2.01
SNCA-209ENST00000506244 PTPRGP23470 1445 aa27.6■■■□□ 2.01
SNCA-209ENST00000506244 ADCY10Q96PN6 1610 aa27.53■■■□□ 2
SNCA-209ENST00000506244 TTBK1Q5TCY1 1321 aaPredicted RBP27.46■■□□□ 1.99
SNCA-209ENST00000506244 NPM1P06748 294 aaKnown RBP eCLIP27.46■■□□□ 1.99
SNCA-209ENST00000506244 SAMD9Q5K651 1589 aa27.46■■□□□ 1.99
SNCA-209ENST00000506244 UHRF1BP1LA0JNW5 1464 aa27.44■■□□□ 1.98
SNCA-209ENST00000506244 UACAQ9BZF9 1416 aa27.44■■□□□ 1.98
SNCA-209ENST00000506244 TRHP20396 242 aaPredicted RBP27.44■■□□□ 1.98
SNCA-209ENST00000506244 ABCC2Q92887 1545 aa27.43■■□□□ 1.98
SNCA-209ENST00000506244 MAPKBP1O60336 1514 aa27.41■■□□□ 1.98
SNCA-209ENST00000506244 UBTFP17480 764 aaKnown RBP27.39■■□□□ 1.98
SNCA-209ENST00000506244 EFCAB5A4FU69 1503 aa27.39■■□□□ 1.98
SNCA-209ENST00000506244 ABCA8O94911 1581 aa27.31■■□□□ 1.96
SNCA-209ENST00000506244 EHMT2Q96KQ7 1210 aa27.31■■□□□ 1.96
SNCA-209ENST00000506244 PLB1Q6P1J6 1458 aa27.31■■□□□ 1.96
SNCA-209ENST00000506244 KDM5BQ9UGL1 1544 aa27.3■■□□□ 1.96
SNCA-209ENST00000506244 RANGAP1P46060 587 aaPredicted RBP27.27■■□□□ 1.96
SNCA-209ENST00000506244 P3H3Q8IVL6 736 aa27.27■■□□□ 1.96
SNCA-209ENST00000506244 ABCC10Q5T3U5 1492 aa27.25■■□□□ 1.95
SNCA-209ENST00000506244 ZCCHC11Q5TAX3 1644 aaKnown RBP27.24■■□□□ 1.95
SNCA-209ENST00000506244 FHOD3Q2V2M9 1422 aa27.24■■□□□ 1.95
SNCA-209ENST00000506244 DIP2BQ9P265 1576 aa27.22■■□□□ 1.95
SNCA-209ENST00000506244 KIF13AQ9H1H9 1805 aa27.22■■□□□ 1.95
SNCA-209ENST00000506244 ASXL2Q76L83 1435 aa27.2■■□□□ 1.94
SNCA-209ENST00000506244 RAPGEF6Q8TEU7 1601 aa27.19■■□□□ 1.94
SNCA-209ENST00000506244 ARHGAP35Q9NRY4 1499 aa27.14■■□□□ 1.94
SNCA-209ENST00000506244 FAM69CQ0P6D2 419 aa27.12■■□□□ 1.93
SNCA-209ENST00000506244 FMN1Q68DA7 1419 aa27.11■■□□□ 1.93
SNCA-209ENST00000506244 WDR7Q9Y4E6 1490 aa27.11■■□□□ 1.93
SNCA-209ENST00000506244 GLI2P10070 1586 aa27.08■■□□□ 1.93
SNCA-209ENST00000506244 NUP153P49790 1475 aaKnown RBP27.06■■□□□ 1.92
SNCA-209ENST00000506244 EPRSP07814 1512 aaKnown RBP27.05■■□□□ 1.92
SNCA-209ENST00000506244 ATP10BO94823 1461 aa27.04■■□□□ 1.92
SNCA-209ENST00000506244 CLIP1P30622 1438 aa27.01■■□□□ 1.91
SNCA-209ENST00000506244 HECW1Q76N89 1606 aa27.01■■□□□ 1.91
SNCA-209ENST00000506244 ARID3CA6NKF2 412 aa26.97■■□□□ 1.91
SNCA-209ENST00000506244 MAP3K4Q9Y6R4 1608 aa26.95■■□□□ 1.91
SNCA-209ENST00000506244 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.94■■□□□ 1.9
SNCA-209ENST00000506244 HNRNPUL2Q1KMD3 747 aaKnown RBP26.94■■□□□ 1.9
SNCA-209ENST00000506244 TSPOAP1O95153 1857 aa26.93■■□□□ 1.9
SNCA-209ENST00000506244 CFAP43Q8NDM7 1665 aa26.91■■□□□ 1.9
SNCA-209ENST00000506244 CEP162Q5TB80 1403 aa26.89■■□□□ 1.89
SNCA-209ENST00000506244 TEX14Q8IWB6 1497 aa26.87■■□□□ 1.89
SNCA-209ENST00000506244 PCF11O94913 1555 aaKnown RBP26.87■■□□□ 1.89
SNCA-209ENST00000506244 CDK13Q14004 1512 aaKnown RBP26.86■■□□□ 1.89
SNCA-209ENST00000506244 CASKIN1Q8WXD9 1431 aa26.86■■□□□ 1.89
SNCA-209ENST00000506244 PPRC1Q5VV67 1664 aaKnown RBP26.85■■□□□ 1.89
SNCA-209ENST00000506244 KCNH8Q96L42 1107 aa26.85■■□□□ 1.89
SNCA-209ENST00000506244 FYCO1Q9BQS8 1478 aa26.84■■□□□ 1.89
SNCA-209ENST00000506244 ATP1B4Q9UN42 357 aaPredicted RBP26.83■■□□□ 1.89
SNCA-209ENST00000506244 CCDC18Q5T9S5 1454 aa26.82■■□□□ 1.88
SNCA-209ENST00000506244 PLEKHD1A6NEE1 506 aa26.82■■□□□ 1.88
SNCA-209ENST00000506244 ABCA9Q8IUA7 1624 aa26.82■■□□□ 1.88
SNCA-209ENST00000506244 CD109Q6YHK3 1445 aa26.82■■□□□ 1.88
SNCA-209ENST00000506244 MAGI3Q5TCQ9 1506 aa26.8■■□□□ 1.88
SNCA-209ENST00000506244 KDM6BO15054 1643 aa26.79■■□□□ 1.88
SNCA-209ENST00000506244 CDK11AQ9UQ88 783 aaPredicted RBP26.78■■□□□ 1.88
SNCA-209ENST00000506244 LOC105371045A0A1W2PR82 267 aa26.76■■□□□ 1.87
SNCA-209ENST00000506244 LRRIQ1Q96JM4 1722 aa26.74■■□□□ 1.87
SNCA-209ENST00000506244 TROQ12816 1431 aaPredicted RBP26.68■■□□□ 1.86
SNCA-209ENST00000506244 KIF14Q15058 1648 aa26.68■■□□□ 1.86
SNCA-209ENST00000506244 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.67■■□□□ 1.86
SNCA-209ENST00000506244 TTC37Q6PGP7 1564 aa26.65■■□□□ 1.86
SNCA-209ENST00000506244 PHLDB1Q86UU1 1377 aa26.62■■□□□ 1.85
SNCA-209ENST00000506244 CFAP74Q9C0B2 1584 aa26.62■■□□□ 1.85
SNCA-209ENST00000506244 NEO1Q92859 1461 aa26.62■■□□□ 1.85
SNCA-209ENST00000506244 VPS8Q8N3P4 1428 aa26.58■■□□□ 1.85
SNCA-209ENST00000506244 MYO5CQ9NQX4 1742 aa26.56■■□□□ 1.84
SNCA-209ENST00000506244 ARAP3Q8WWN8 1544 aa26.55■■□□□ 1.84
SNCA-209ENST00000506244 FANCAO15360 1455 aa26.54■■□□□ 1.84
SNCA-209ENST00000506244 COL17A1Q9UMD9 1497 aaPredicted RBP26.54■■□□□ 1.84
SNCA-209ENST00000506244 PLCH2O75038 1416 aa26.51■■□□□ 1.83
SNCA-209ENST00000506244 EHBP1L1Q8N3D4 1523 aa26.49■■□□□ 1.83
SNCA-209ENST00000506244 MTUS2Q5JR59 1369 aa26.48■■□□□ 1.83
SNCA-209ENST00000506244 AKNAQ7Z591 1439 aa26.45■■□□□ 1.82
SNCA-209ENST00000506244 PREX2Q70Z35 1606 aa26.44■■□□□ 1.82
SNCA-209ENST00000506244 ARHGAP5Q13017 1502 aa26.44■■□□□ 1.82
SNCA-209ENST00000506244 TIAM1Q13009 1591 aa26.43■■□□□ 1.82
SNCA-209ENST00000506244 EFCAB2Q5VUJ9 269 aa26.4■■□□□ 1.82
SNCA-209ENST00000506244 DENND4BO75064 1496 aaPredicted RBP26.4■■□□□ 1.82
SNCA-209ENST00000506244 ADGRL1O94910 1474 aa26.4■■□□□ 1.82
SNCA-209ENST00000506244 MAP3K1Q13233 1512 aa26.38■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms