RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 PRXQ9BXM0 1461 aa13.42□□□□□ -0.26
LIMCH1-206ENST00000505705 UBTFP17480 764 aaKnown RBP13.41□□□□□ -0.26
LIMCH1-206ENST00000505705 NUP160Q12769 1436 aa13.39□□□□□ -0.27
LIMCH1-206ENST00000505705 CEP170Q5SW79 1584 aa13.38□□□□□ -0.27
LIMCH1-206ENST00000505705 DNAJC5Q9H3Z4 198 aa13.36□□□□□ -0.27
LIMCH1-206ENST00000505705 KIF21BO75037 1637 aa13.35□□□□□ -0.27
LIMCH1-206ENST00000505705 RANGAP1P46060 587 aaPredicted RBP13.35□□□□□ -0.27
LIMCH1-206ENST00000505705 JPH4Q96JJ6 628 aa13.35□□□□□ -0.27
LIMCH1-206ENST00000505705 GOLGA3Q08378 1498 aa13.35□□□□□ -0.27
LIMCH1-206ENST00000505705 KIAA0586Q9BVV6 1533 aa13.34□□□□□ -0.27
LIMCH1-206ENST00000505705 PIAS4Q8N2W9 510 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-206ENST00000505705 CLASP1Q7Z460 1538 aa13.33□□□□□ -0.28
LIMCH1-206ENST00000505705 IQGAP2Q13576 1575 aa13.29□□□□□ -0.28
LIMCH1-206ENST00000505705 LOC105371045A0A1W2PR82 267 aa13.29□□□□□ -0.28
LIMCH1-206ENST00000505705 CTTNBP2Q8WZ74 1663 aa13.28□□□□□ -0.28
LIMCH1-206ENST00000505705 TTBK1Q5TCY1 1321 aaPredicted RBP13.27□□□□□ -0.29
LIMCH1-206ENST00000505705 PRG4Q92954 1404 aaPredicted RBP13.27□□□□□ -0.29
LIMCH1-206ENST00000505705 CARMIL2Q6F5E8 1435 aa13.25□□□□□ -0.29
LIMCH1-206ENST00000505705 PPP6R1Q9UPN7 881 aa13.25□□□□□ -0.29
LIMCH1-206ENST00000505705 ARHGEF11O15085 1522 aa13.24□□□□□ -0.29
LIMCH1-206ENST00000505705 P3H3Q8IVL6 736 aa13.24□□□□□ -0.29
LIMCH1-206ENST00000505705 SHROOM2Q13796 1616 aa13.22□□□□□ -0.29
LIMCH1-206ENST00000505705 TNIKQ9UKE5 1360 aa13.21□□□□□ -0.29
LIMCH1-206ENST00000505705 RIMBP3CA6NJZ7 1639 aa13.21□□□□□ -0.29
LIMCH1-206ENST00000505705 RIMBP3BA6NNM3 1639 aa13.21□□□□□ -0.29
LIMCH1-206ENST00000505705 RIMBP3Q9UFD9 1639 aa13.21□□□□□ -0.29
LIMCH1-206ENST00000505705 ADRA2BP18089 450 aa13.21□□□□□ -0.29
LIMCH1-206ENST00000505705 CYB5RLQ6IPT4 315 aa13.21□□□□□ -0.29
LIMCH1-206ENST00000505705 UGGT2Q9NYU1 1516 aa13.2□□□□□ -0.3
LIMCH1-206ENST00000505705 ERCC6L2Q5T890 1561 aa13.19□□□□□ -0.3
LIMCH1-206ENST00000505705 PTPRGP23470 1445 aa13.16□□□□□ -0.3
LIMCH1-206ENST00000505705 DISP1Q96F81 1524 aa13.16□□□□□ -0.3
LIMCH1-206ENST00000505705 KIAA0556O60303 1618 aa13.15□□□□□ -0.3
LIMCH1-206ENST00000505705 ARAP1Q96P48 1450 aa13.14□□□□□ -0.31
LIMCH1-206ENST00000505705 CLIP1P30622 1438 aa13.13□□□□□ -0.31
LIMCH1-206ENST00000505705 EFCAB5A4FU69 1503 aa13.12□□□□□ -0.31
LIMCH1-206ENST00000505705 FHOD3Q2V2M9 1422 aa13.12□□□□□ -0.31
LIMCH1-206ENST00000505705 CEP162Q5TB80 1403 aa13.11□□□□□ -0.31
LIMCH1-206ENST00000505705 SAMD9Q5K651 1589 aa13.11□□□□□ -0.31
LIMCH1-206ENST00000505705 NPM1P06748 294 aaKnown RBP eCLIP13.09□□□□□ -0.31
LIMCH1-206ENST00000505705 ATP1B4Q9UN42 357 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-206ENST00000505705 ARHGAP35Q9NRY4 1499 aa13.09□□□□□ -0.31
LIMCH1-206ENST00000505705 POTEDQ86YR6 584 aa13.08□□□□□ -0.32
LIMCH1-206ENST00000505705 UACAQ9BZF9 1416 aa13.05□□□□□ -0.32
LIMCH1-206ENST00000505705 FMN1Q68DA7 1419 aa13.05□□□□□ -0.32
LIMCH1-206ENST00000505705 ARID3CA6NKF2 412 aa13.04□□□□□ -0.32
LIMCH1-206ENST00000505705 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.04□□□□□ -0.32
LIMCH1-206ENST00000505705 HNRNPUL2Q1KMD3 747 aaKnown RBP13.04□□□□□ -0.32
LIMCH1-206ENST00000505705 PLB1Q6P1J6 1458 aa13.03□□□□□ -0.32
LIMCH1-206ENST00000505705 ABCC2Q92887 1545 aa12.99□□□□□ -0.33
LIMCH1-206ENST00000505705 RAPGEF6Q8TEU7 1601 aa12.99□□□□□ -0.33
LIMCH1-206ENST00000505705 ADCY10Q96PN6 1610 aa12.99□□□□□ -0.33
LIMCH1-206ENST00000505705 UHRF1BP1LA0JNW5 1464 aa12.98□□□□□ -0.33
LIMCH1-206ENST00000505705 ABCA8O94911 1581 aa12.98□□□□□ -0.33
LIMCH1-206ENST00000505705 APLP2Q06481 763 aa12.94□□□□□ -0.34
LIMCH1-206ENST00000505705 HECW1Q76N89 1606 aa12.93□□□□□ -0.34
LIMCH1-206ENST00000505705 TRHP20396 242 aaPredicted RBP12.93□□□□□ -0.34
LIMCH1-206ENST00000505705 VPS8Q8N3P4 1428 aa12.93□□□□□ -0.34
LIMCH1-206ENST00000505705 CASKIN1Q8WXD9 1431 aa12.93□□□□□ -0.34
LIMCH1-206ENST00000505705 NUP153P49790 1475 aaKnown RBP12.92□□□□□ -0.34
LIMCH1-206ENST00000505705 PLEKHD1A6NEE1 506 aa12.92□□□□□ -0.34
LIMCH1-206ENST00000505705 CDK11AQ9UQ88 783 aaPredicted RBP12.92□□□□□ -0.34
LIMCH1-206ENST00000505705 KDM5BQ9UGL1 1544 aa12.92□□□□□ -0.34
LIMCH1-206ENST00000505705 ATP10BO94823 1461 aa12.91□□□□□ -0.34
LIMCH1-206ENST00000505705 PCF11O94913 1555 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-206ENST00000505705 KCNH8Q96L42 1107 aa12.91□□□□□ -0.34
LIMCH1-206ENST00000505705 ZCCHC11Q5TAX3 1644 aaKnown RBP12.91□□□□□ -0.34
LIMCH1-206ENST00000505705 FYCO1Q9BQS8 1478 aa12.91□□□□□ -0.34
LIMCH1-206ENST00000505705 ASXL2Q76L83 1435 aa12.88□□□□□ -0.35
LIMCH1-206ENST00000505705 EPRSP07814 1512 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-206ENST00000505705 CDK13Q14004 1512 aaKnown RBP12.88□□□□□ -0.35
LIMCH1-206ENST00000505705 CCDC18Q5T9S5 1454 aa12.87□□□□□ -0.35
LIMCH1-206ENST00000505705 FAM69CQ0P6D2 419 aa12.86□□□□□ -0.35
LIMCH1-206ENST00000505705 MAPKBP1O60336 1514 aa12.86□□□□□ -0.35
LIMCH1-206ENST00000505705 WDR7Q9Y4E6 1490 aa12.84□□□□□ -0.35
LIMCH1-206ENST00000505705 MTUS2Q5JR59 1369 aa12.82□□□□□ -0.36
LIMCH1-206ENST00000505705 ABCC10Q5T3U5 1492 aa12.8□□□□□ -0.36
LIMCH1-206ENST00000505705 LRRIQ1Q96JM4 1722 aa12.8□□□□□ -0.36
LIMCH1-206ENST00000505705 TROQ12816 1431 aaPredicted RBP12.79□□□□□ -0.36
LIMCH1-206ENST00000505705 TIAM1Q13009 1591 aa12.77□□□□□ -0.37
LIMCH1-206ENST00000505705 KANK4Q5T7N3 995 aaPredicted RBP12.76□□□□□ -0.37
LIMCH1-206ENST00000505705 DIP2BQ9P265 1576 aa12.76□□□□□ -0.37
LIMCH1-206ENST00000505705 PPARGC1BQ86YN6 1023 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-206ENST00000505705 MAP3K1Q13233 1512 aa12.74□□□□□ -0.37
LIMCH1-206ENST00000505705 CD109Q6YHK3 1445 aa12.74□□□□□ -0.37
LIMCH1-206ENST00000505705 CFAP43Q8NDM7 1665 aa12.73□□□□□ -0.37
LIMCH1-206ENST00000505705 KIF14Q15058 1648 aa12.73□□□□□ -0.37
LIMCH1-206ENST00000505705 MAGI3Q5TCQ9 1506 aa12.73□□□□□ -0.37
LIMCH1-206ENST00000505705 EHBP1L1Q8N3D4 1523 aa12.73□□□□□ -0.37
LIMCH1-206ENST00000505705 LRRC9Q6ZRR7 1453 aa12.73□□□□□ -0.37
LIMCH1-206ENST00000505705 GLI2P10070 1586 aa12.73□□□□□ -0.37
LIMCH1-206ENST00000505705 KIF13AQ9H1H9 1805 aa12.72□□□□□ -0.37
LIMCH1-206ENST00000505705 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.71□□□□□ -0.38
LIMCH1-206ENST00000505705 CCNB3Q8WWL7 1395 aa12.7□□□□□ -0.38
LIMCH1-206ENST00000505705 TSPOAP1O95153 1857 aa12.7□□□□□ -0.38
LIMCH1-206ENST00000505705 ZNF777Q9ULD5 760 aaPredicted RBP12.69□□□□□ -0.38
LIMCH1-206ENST00000505705 ABCA9Q8IUA7 1624 aa12.69□□□□□ -0.38
LIMCH1-206ENST00000505705 SUPT6HQ7KZ85 1726 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-206ENST00000505705 TEX14Q8IWB6 1497 aa12.67□□□□□ -0.38
LIMCH1-206ENST00000505705 MAP3K4Q9Y6R4 1608 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms