RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 JPH4Q96JJ6 628 aa7.79□□□□□ -1.16
USP54-216ENST00000498143 CCDC9Q9Y3X0 531 aaKnown RBP7.79□□□□□ -1.16
USP54-216ENST00000498143 FANCD2Q9BXW9 1451 aa7.77□□□□□ -1.17
USP54-216ENST00000498143 POGZQ7Z3K3 1410 aa7.77□□□□□ -1.17
USP54-216ENST00000498143 SUPT5HO00267 1087 aaKnown RBP7.76□□□□□ -1.17
USP54-216ENST00000498143 CAPN15O75808 1086 aa7.76□□□□□ -1.17
USP54-216ENST00000498143 NCAPD3P42695 1498 aa7.76□□□□□ -1.17
USP54-216ENST00000498143 GAPVD1Q14C86 1478 aa7.75□□□□□ -1.17
USP54-216ENST00000498143 NCBP3Q53F19 620 aaKnown RBP7.75□□□□□ -1.17
USP54-216ENST00000498143 CSRNP3Q8WYN3 585 aa7.75□□□□□ -1.17
USP54-216ENST00000498143 KLHL34Q8N239 644 aa7.73□□□□□ -1.17
USP54-216ENST00000498143 RSF1Q96T23 1441 aaPredicted RBP7.72□□□□□ -1.17
USP54-216ENST00000498143 ATAD2BQ9ULI0 1458 aa7.71□□□□□ -1.17
USP54-216ENST00000498143 PLEKHG5O94827 1062 aa7.71□□□□□ -1.17
USP54-216ENST00000498143 IFT140Q96RY7 1462 aa7.7□□□□□ -1.18
USP54-216ENST00000498143 YY1P25490 414 aa7.7□□□□□ -1.18
USP54-216ENST00000498143 PPP6R1Q9UPN7 881 aa7.7□□□□□ -1.18
USP54-216ENST00000498143 CFAP44Q96MT7 982 aa7.7□□□□□ -1.18
USP54-216ENST00000498143 AQRO60306 1485 aaKnown RBP eCLIP7.7□□□□□ -1.182e-6■■■□□ 15.2
USP54-216ENST00000498143 SOGA1O94964 1423 aa7.69□□□□□ -1.18
USP54-216ENST00000498143 BICRAQ9NZM4 1560 aa7.69□□□□□ -1.18
USP54-216ENST00000498143 CENPBP07199 599 aaPredicted RBP7.68□□□□□ -1.18
USP54-216ENST00000498143 PPP1R15AO75807 674 aaPredicted RBP7.67□□□□□ -1.18
USP54-216ENST00000498143 NGLY1Q96IV0 654 aa7.67□□□□□ -1.18
USP54-216ENST00000498143 CDK11AQ9UQ88 783 aaPredicted RBP7.67□□□□□ -1.18
USP54-216ENST00000498143 CARMIL2Q6F5E8 1435 aa7.66□□□□□ -1.18
USP54-216ENST00000498143 PLEKHD1A6NEE1 506 aa7.66□□□□□ -1.18
USP54-216ENST00000498143 RIMBP3CA6NJZ7 1639 aa7.66□□□□□ -1.18
USP54-216ENST00000498143 RIMBP3BA6NNM3 1639 aa7.66□□□□□ -1.18
USP54-216ENST00000498143 RIMBP3Q9UFD9 1639 aa7.66□□□□□ -1.18
USP54-216ENST00000498143 PTPRGP23470 1445 aa7.65□□□□□ -1.19
USP54-216ENST00000498143 ZNF777Q9ULD5 760 aaPredicted RBP7.64□□□□□ -1.19
USP54-216ENST00000498143 LAMC3Q9Y6N6 1575 aa7.64□□□□□ -1.19
USP54-216ENST00000498143 YTHDC1Q96MU7 727 aaKnown RBP7.64□□□□□ -1.19
USP54-216ENST00000498143 RXRBP28702 533 aa7.63□□□□□ -1.19
USP54-216ENST00000498143 HSPA1LP34931 641 aa7.62□□□□□ -1.19
USP54-216ENST00000498143 P3H3Q8IVL6 736 aa7.62□□□□□ -1.19
USP54-216ENST00000498143 ADGRL1O94910 1474 aa7.62□□□□□ -1.19
USP54-216ENST00000498143 ARAP1Q96P48 1450 aa7.62□□□□□ -1.19
USP54-216ENST00000498143 ZNF772Q68DY9 489 aaPredicted RBP7.62□□□□□ -1.19
USP54-216ENST00000498143 ERCC6L2Q5T890 1561 aa7.62□□□□□ -1.19
USP54-216ENST00000498143 TULP1O00294 542 aaPredicted RBP7.6□□□□□ -1.19
USP54-216ENST00000498143 EID1Q9Y6B2 187 aa7.6□□□□□ -1.19
USP54-216ENST00000498143 ABCC8Q09428 1581 aa7.6□□□□□ -1.19
USP54-216ENST00000498143 LMOD2Q6P5Q4 547 aa7.59□□□□□ -1.19
USP54-216ENST00000498143 CHGAP10645 457 aaKnown RBP7.59□□□□□ -1.2
USP54-216ENST00000498143 TEX14Q8IWB6 1497 aa7.58□□□□□ -1.2
USP54-216ENST00000498143 KDM6BO15054 1643 aa7.58□□□□□ -1.2
USP54-216ENST00000498143 SYNJ1O43426 1573 aa7.58□□□□□ -1.2
USP54-216ENST00000498143 GGT6Q6P531 493 aa7.58□□□□□ -1.2
USP54-216ENST00000498143 PRG4Q92954 1404 aaPredicted RBP7.58□□□□□ -1.2
USP54-216ENST00000498143 CEBPAP49715 358 aaPredicted RBP7.57□□□□□ -1.2
USP54-216ENST00000498143 RAPGEF3O95398 923 aa7.55□□□□□ -1.2
USP54-216ENST00000498143 ANKLE2Q86XL3 938 aa7.55□□□□□ -1.2
USP54-216ENST00000498143 PROSER2Q86WR7 435 aaPredicted RBP7.54□□□□□ -1.2
USP54-216ENST00000498143 HOMEZQ8IX15 550 aa7.54□□□□□ -1.2
USP54-216ENST00000498143 ARXQ96QS3 562 aa7.54□□□□□ -1.2
USP54-216ENST00000498143 PODXL2Q9NZ53 605 aa7.54□□□□□ -1.2
USP54-216ENST00000498143 GLIPR1L2Q4G1C9 344 aa7.54□□□□□ -1.2
USP54-216ENST00000498143 ATF3P18847 181 aa7.53□□□□□ -1.2
USP54-216ENST00000498143 NBPF8Q3BBV2 869 aa7.53□□□□□ -1.2
USP54-216ENST00000498143 NBPF14Q5TI25 921 aa7.53□□□□□ -1.2
USP54-216ENST00000498143 PIAS4Q8N2W9 510 aaPredicted RBP7.53□□□□□ -1.2
USP54-216ENST00000498143 BAG6P46379 1132 aa7.52□□□□□ -1.21
USP54-216ENST00000498143 HDGFP51858 240 aaKnown RBP7.51□□□□□ -1.21
USP54-216ENST00000498143 C16orf71Q8IYS4 520 aaPredicted RBP7.51□□□□□ -1.21
USP54-216ENST00000498143 UHRF1BP1Q6BDS2 1440 aa7.5□□□□□ -1.21
USP54-216ENST00000498143 BCL11AQ9H165 835 aa7.5□□□□□ -1.21
USP54-216ENST00000498143 SNAPC4Q5SXM2 1469 aa7.5□□□□□ -1.21
USP54-216ENST00000498143 ZNF608Q9ULD9 1512 aaPredicted RBP7.5□□□□□ -1.21
USP54-216ENST00000498143 GRIN2BQ13224 1484 aa7.49□□□□□ -1.21
USP54-216ENST00000498143 TPRNQ4KMQ1 711 aa7.49□□□□□ -1.21
USP54-216ENST00000498143 SPATA31D1Q6ZQQ2 1576 aa7.49□□□□□ -1.21
USP54-216ENST00000498143 GPR162Q16538 588 aa7.48□□□□□ -1.21
USP54-216ENST00000498143 THEMISQ8N1K5 641 aaPredicted RBP7.48□□□□□ -1.21
USP54-216ENST00000498143 C8orf37Q96NL8 207 aa7.48□□□□□ -1.21
USP54-216ENST00000498143 HRCP23327 699 aa7.48□□□□□ -1.21
USP54-216ENST00000498143 EFCAB2Q5VUJ9 269 aa7.48□□□□□ -1.21
USP54-216ENST00000498143 ADAMTS2O95450 1211 aa7.48□□□□□ -1.21
USP54-216ENST00000498143 UBTFP17480 764 aaKnown RBP7.48□□□□□ -1.21
USP54-216ENST00000498143 PKD2Q13563 968 aa7.47□□□□□ -1.21
USP54-216ENST00000498143 HECW2Q9P2P5 1572 aa7.47□□□□□ -1.21
USP54-216ENST00000498143 TOP2BQ02880 1626 aa7.47□□□□□ -1.21
USP54-216ENST00000498143 DCAF1Q9Y4B6 1507 aa7.47□□□□□ -1.21
USP54-216ENST00000498143 NEFLP07196 543 aa7.46□□□□□ -1.21
USP54-216ENST00000498143 HNRNPMP52272 730 aaKnown RBP eCLIP7.46□□□□□ -1.21
USP54-216ENST00000498143 CD109Q6YHK3 1445 aa7.46□□□□□ -1.22
USP54-216ENST00000498143 NCKAP5LQ9HCH0 1330 aa7.46□□□□□ -1.22
USP54-216ENST00000498143 MSH5O43196 834 aa7.46□□□□□ -1.22
USP54-216ENST00000498143 POLR3GLQ9BT43 218 aa7.46□□□□□ -1.22
USP54-216ENST00000498143 CCER1Q8TC90 406 aaPredicted RBP7.45□□□□□ -1.22
USP54-216ENST00000498143 PLB1Q6P1J6 1458 aa7.45□□□□□ -1.22
USP54-216ENST00000498143 GIGYF1O75420 1035 aaPredicted RBP7.45□□□□□ -1.22
USP54-216ENST00000498143 TIMELESSQ9UNS1 1208 aa7.44□□□□□ -1.22
USP54-216ENST00000498143 IFFO2Q5TF58 517 aa7.43□□□□□ -1.22
USP54-216ENST00000498143 HMGXB3Q12766 1538 aa7.43□□□□□ -1.22
USP54-216ENST00000498143 YEATS2Q9ULM3 1422 aa7.43□□□□□ -1.22
USP54-216ENST00000498143 QTRT2Q9H974 415 aaKnown RBP7.42□□□□□ -1.22
USP54-216ENST00000498143 ZNF335Q9H4Z2 1342 aaPredicted RBP7.42□□□□□ -1.22
USP54-216ENST00000498143 PPP4R3CPQ6ZMV5 832 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms