RNA–Protein interactions for RNA: ENST00000497311.5

SMC4-226, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-226ENST00000497311 RUSC2Q8N2Y8 1516 aa29.8■■■□□ 2.36
SMC4-226ENST00000497311 CUL7Q14999 1698 aa29.76■■■□□ 2.36
SMC4-226ENST00000497311 KIAA0586Q9BVV6 1533 aa29.71■■■□□ 2.35
SMC4-226ENST00000497311 CARMIL1Q5VZK9 1371 aa29.66■■■□□ 2.34
SMC4-226ENST00000497311 NPM1P06748 294 aaKnown RBP eCLIP29.57■■■□□ 2.32
SMC4-226ENST00000497311 KIF13AQ9H1H9 1805 aa29.48■■■□□ 2.31
SMC4-226ENST00000497311 ADCY10Q96PN6 1610 aa29.47■■■□□ 2.31
SMC4-226ENST00000497311 PTPRGP23470 1445 aa29.44■■■□□ 2.3
SMC4-226ENST00000497311 CARMIL2Q6F5E8 1435 aa29.44■■■□□ 2.3
SMC4-226ENST00000497311 MAPKBP1O60336 1514 aa29.43■■■□□ 2.3
SMC4-226ENST00000497311 IQGAP2Q13576 1575 aa29.43■■■□□ 2.3
SMC4-226ENST00000497311 FAM69CQ0P6D2 419 aa29.42■■■□□ 2.3
SMC4-226ENST00000497311 ABCC10Q5T3U5 1492 aa29.41■■■□□ 2.3
SMC4-226ENST00000497311 RAPGEF2Q9Y4G8 1499 aa29.4■■■□□ 2.3
SMC4-226ENST00000497311 TTBK1Q5TCY1 1321 aaPredicted RBP29.39■■■□□ 2.3
SMC4-226ENST00000497311 TNIKQ9UKE5 1360 aa29.39■■■□□ 2.29
SMC4-226ENST00000497311 DIP2BQ9P265 1576 aa29.31■■■□□ 2.28
SMC4-226ENST00000497311 DISP1Q96F81 1524 aa29.27■■■□□ 2.28
SMC4-226ENST00000497311 AEBP2Q6ZN18 517 aaPredicted RBP29.27■■■□□ 2.28
SMC4-226ENST00000497311 ABCC2Q92887 1545 aa29.24■■■□□ 2.27
SMC4-226ENST00000497311 UGGT2Q9NYU1 1516 aa29.24■■■□□ 2.27
SMC4-226ENST00000497311 UHRF1BP1LA0JNW5 1464 aa29.2■■■□□ 2.26
SMC4-226ENST00000497311 UACAQ9BZF9 1416 aa29.2■■■□□ 2.26
SMC4-226ENST00000497311 KIAA0556O60303 1618 aa29.15■■■□□ 2.26
SMC4-226ENST00000497311 ASXL2Q76L83 1435 aa29.13■■■□□ 2.25
SMC4-226ENST00000497311 PLB1Q6P1J6 1458 aa29.13■■■□□ 2.25
SMC4-226ENST00000497311 TSPOAP1O95153 1857 aa29.12■■■□□ 2.25
SMC4-226ENST00000497311 CTTNBP2Q8WZ74 1663 aa29.12■■■□□ 2.25
SMC4-226ENST00000497311 PRXQ9BXM0 1461 aa29.1■■■□□ 2.25
SMC4-226ENST00000497311 KDM5BQ9UGL1 1544 aa29.06■■■□□ 2.24
SMC4-226ENST00000497311 KDM6BO15054 1643 aa29.05■■■□□ 2.24
SMC4-226ENST00000497311 GOLGA3Q08378 1498 aa29.04■■■□□ 2.24
SMC4-226ENST00000497311 GLI2P10070 1586 aa29.02■■■□□ 2.24
SMC4-226ENST00000497311 ZCCHC11Q5TAX3 1644 aaKnown RBP28.98■■■□□ 2.23
SMC4-226ENST00000497311 EPRSP07814 1512 aaKnown RBP28.95■■■□□ 2.23
SMC4-226ENST00000497311 CSRNP3Q8WYN3 585 aa28.95■■■□□ 2.22
SMC4-226ENST00000497311 PPRC1Q5VV67 1664 aaKnown RBP28.9■■■□□ 2.22
SMC4-226ENST00000497311 ABCA8O94911 1581 aa28.87■■■□□ 2.21
SMC4-226ENST00000497311 WDR7Q9Y4E6 1490 aa28.86■■■□□ 2.21
SMC4-226ENST00000497311 FAM9AQ8IZU1 332 aaPredicted RBP28.86■■■□□ 2.21
SMC4-226ENST00000497311 MAP3K4Q9Y6R4 1608 aa28.85■■■□□ 2.21
SMC4-226ENST00000497311 EEA1Q15075 1411 aa28.83■■■□□ 2.21
SMC4-226ENST00000497311 P3H3Q8IVL6 736 aa28.82■■■□□ 2.2
SMC4-226ENST00000497311 TEX14Q8IWB6 1497 aa28.8■■■□□ 2.2
SMC4-226ENST00000497311 KCNH8Q96L42 1107 aa28.76■■■□□ 2.19
SMC4-226ENST00000497311 COL17A1Q9UMD9 1497 aaPredicted RBP28.73■■■□□ 2.19
SMC4-226ENST00000497311 KDM4FA0A1W2PPD8 638 aa28.73■■■□□ 2.19
SMC4-226ENST00000497311 SAMD9Q5K651 1589 aa28.71■■■□□ 2.19
SMC4-226ENST00000497311 CD109Q6YHK3 1445 aa28.69■■■□□ 2.18
SMC4-226ENST00000497311 ARID3CA6NKF2 412 aa28.68■■■□□ 2.18
SMC4-226ENST00000497311 CFAP43Q8NDM7 1665 aa28.67■■■□□ 2.18
SMC4-226ENST00000497311 ATP10BO94823 1461 aa28.66■■■□□ 2.18
SMC4-226ENST00000497311 MAGI3Q5TCQ9 1506 aa28.65■■■□□ 2.18
SMC4-226ENST00000497311 RANGAP1P46060 587 aaPredicted RBP28.64■■■□□ 2.18
SMC4-226ENST00000497311 RAPGEF6Q8TEU7 1601 aa28.59■■■□□ 2.17
SMC4-226ENST00000497311 KIF21BO75037 1637 aa28.56■■■□□ 2.16
SMC4-226ENST00000497311 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.55■■■□□ 2.16
SMC4-226ENST00000497311 HNRNPUL2Q1KMD3 747 aaKnown RBP28.55■■■□□ 2.16
SMC4-226ENST00000497311 FHOD3Q2V2M9 1422 aa28.54■■■□□ 2.16
SMC4-226ENST00000497311 ADGRL1O94910 1474 aa28.51■■■□□ 2.15
SMC4-226ENST00000497311 CHIC1Q5VXU3 224 aa28.49■■■□□ 2.15
SMC4-226ENST00000497311 NUP153P49790 1475 aaKnown RBP28.48■■■□□ 2.15
SMC4-226ENST00000497311 ABCA9Q8IUA7 1624 aa28.47■■■□□ 2.15
SMC4-226ENST00000497311 EFCAB5A4FU69 1503 aa28.46■■■□□ 2.15
SMC4-226ENST00000497311 ARAP3Q8WWN8 1544 aa28.42■■■□□ 2.14
SMC4-226ENST00000497311 PHLDB1Q86UU1 1377 aa28.41■■■□□ 2.14
SMC4-226ENST00000497311 UBTFP17480 764 aaKnown RBP28.41■■■□□ 2.14
SMC4-226ENST00000497311 EHMT2Q96KQ7 1210 aa28.41■■■□□ 2.14
SMC4-226ENST00000497311 PLEKHD1A6NEE1 506 aa28.4■■■□□ 2.14
SMC4-226ENST00000497311 NEO1Q92859 1461 aa28.34■■■□□ 2.13
SMC4-226ENST00000497311 RAPGEF3O95398 923 aa28.28■■■□□ 2.12
SMC4-226ENST00000497311 FMN1Q68DA7 1419 aa28.24■■■□□ 2.11
SMC4-226ENST00000497311 CDK13Q14004 1512 aaKnown RBP28.23■■■□□ 2.11
SMC4-226ENST00000497311 ARHGAP35Q9NRY4 1499 aa28.22■■■□□ 2.11
SMC4-226ENST00000497311 ATP1B4Q9UN42 357 aaPredicted RBP28.22■■■□□ 2.11
SMC4-226ENST00000497311 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.21■■■□□ 2.114e-7■■□□□ 12.8
SMC4-226ENST00000497311 AKNAQ7Z591 1439 aa28.17■■■□□ 2.1
SMC4-226ENST00000497311 FANCAO15360 1455 aa28.16■■■□□ 2.1
SMC4-226ENST00000497311 HECW1Q76N89 1606 aa28.16■■■□□ 2.1
SMC4-226ENST00000497311 FRMPD1Q5SYB0 1578 aa28.16■■■□□ 2.1
SMC4-226ENST00000497311 TTC37Q6PGP7 1564 aa28.15■■■□□ 2.1
SMC4-226ENST00000497311 CFAP74Q9C0B2 1584 aa28.15■■■□□ 2.1
SMC4-226ENST00000497311 DENND4BO75064 1496 aaPredicted RBP28.15■■■□□ 2.1
SMC4-226ENST00000497311 CDK11AQ9UQ88 783 aaPredicted RBP28.12■■■□□ 2.09
SMC4-226ENST00000497311 HECW2Q9P2P5 1572 aa28.07■■■□□ 2.08
SMC4-226ENST00000497311 RICTORQ6R327 1708 aa28.07■■■□□ 2.08
SMC4-226ENST00000497311 ARID4BQ4LE39 1312 aaPredicted RBP28.07■■■□□ 2.08
SMC4-226ENST00000497311 PLCH2O75038 1416 aa28.06■■■□□ 2.08
SMC4-226ENST00000497311 ADAMTSL3P82987 1691 aa28.03■■■□□ 2.08
SMC4-226ENST00000497311 ARHGEF40Q8TER5 1519 aa28.02■■■□□ 2.08
SMC4-226ENST00000497311 BCORL1Q5H9F3 1711 aa27.99■■■□□ 2.07
SMC4-226ENST00000497311 TROQ12816 1431 aaPredicted RBP27.99■■■□□ 2.07
SMC4-226ENST00000497311 SCAPERQ9BY12 1400 aa27.99■■■□□ 2.07
SMC4-226ENST00000497311 PTPRMP28827 1452 aa27.98■■■□□ 2.07
SMC4-226ENST00000497311 EFCAB2Q5VUJ9 269 aa27.98■■■□□ 2.07
SMC4-226ENST00000497311 ZMYM4Q5VZL5 1548 aa27.97■■■□□ 2.07
SMC4-226ENST00000497311 CLIP1P30622 1438 aa27.97■■■□□ 2.07
SMC4-226ENST00000497311 KIF14Q15058 1648 aa27.96■■■□□ 2.07
SMC4-226ENST00000497311 MYO5CQ9NQX4 1742 aa27.96■■■□□ 2.07
SMC4-226ENST00000497311 MAGI2Q86UL8 1455 aa27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms