RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 CLEC11AQ9Y240 323 aa10.16□□□□□ -0.78
SSBP1-213ENST00000496622 PITPNM1O00562 1244 aa10.15□□□□□ -0.79
SSBP1-213ENST00000496622 BAZ1AQ9NRL2 1556 aaPredicted RBP10.12□□□□□ -0.79
SSBP1-213ENST00000496622 LOC105371045A0A1W2PR82 267 aa10.1□□□□□ -0.79
SSBP1-213ENST00000496622 FAM9AQ8IZU1 332 aaPredicted RBP10.09□□□□□ -0.79
SSBP1-213ENST00000496622 PROM2Q8N271 834 aa10.08□□□□□ -0.8
SSBP1-213ENST00000496622 SMARCA4P51532 1647 aa10.08□□□□□ -0.8
SSBP1-213ENST00000496622 CHRDL2Q6WN34 429 aa10.06□□□□□ -0.8
SSBP1-213ENST00000496622 ILDR2Q71H61 639 aa10.06□□□□□ -0.8
SSBP1-213ENST00000496622 ERICH6Q7L0X2 663 aa10.05□□□□□ -0.8
SSBP1-213ENST00000496622 THOC2Q8NI27 1593 aaKnown RBP10.03□□□□□ -0.8
SSBP1-213ENST00000496622 SPDYE1Q8NFV5 336 aaPredicted RBP10.01□□□□□ -0.81
SSBP1-213ENST00000496622 CCDC88BA6NC98 1476 aa10.01□□□□□ -0.81
SSBP1-213ENST00000496622 CHADLQ6NUI6 762 aa9.99□□□□□ -0.81
SSBP1-213ENST00000496622 NCAPD3P42695 1498 aa9.98□□□□□ -0.81
SSBP1-213ENST00000496622 ATAD2BQ9ULI0 1458 aa9.97□□□□□ -0.81
SSBP1-213ENST00000496622 ARHGEF11O15085 1522 aa9.97□□□□□ -0.81
SSBP1-213ENST00000496622 TOP2AP11388 1531 aaKnown RBP9.96□□□□□ -0.82
SSBP1-213ENST00000496622 HMGXB3Q12766 1538 aa9.96□□□□□ -0.82
SSBP1-213ENST00000496622 PRR29P0C7W0 189 aa9.95□□□□□ -0.82
SSBP1-213ENST00000496622 DISP3Q9P2K9 1392 aa9.95□□□□□ -0.82
SSBP1-213ENST00000496622 PIP4P2Q8N4L2 257 aa9.94□□□□□ -0.82
SSBP1-213ENST00000496622 DAXXQ9UER7 740 aaPredicted RBP9.94□□□□□ -0.82
SSBP1-213ENST00000496622 SMARCA2P51531 1590 aa9.93□□□□□ -0.82
SSBP1-213ENST00000496622 BAZ1BQ9UIG0 1483 aaKnown RBP9.91□□□□□ -0.82
SSBP1-213ENST00000496622 ABCC8Q09428 1581 aa9.9□□□□□ -0.82
SSBP1-213ENST00000496622 PEG3Q9GZU2 1588 aa9.9□□□□□ -0.83
SSBP1-213ENST00000496622 PRKAR2AP13861 404 aaKnown RBP9.87□□□□□ -0.83
SSBP1-213ENST00000496622 FXR2P51116 673 aaKnown RBP eCLIP9.87□□□□□ -0.83
SSBP1-213ENST00000496622 MIER1Q8N108 512 aa9.84□□□□□ -0.83
SSBP1-213ENST00000496622 CREBZFQ9NS37 354 aa9.84□□□□□ -0.83
SSBP1-213ENST00000496622 STAG3Q9UJ98 1225 aa9.84□□□□□ -0.83
SSBP1-213ENST00000496622 SPATA31D1Q6ZQQ2 1576 aa9.83□□□□□ -0.84
SSBP1-213ENST00000496622 POTEHQ6S545 545 aa9.83□□□□□ -0.84
SSBP1-213ENST00000496622 VASPP50552 380 aaPredicted RBP9.82□□□□□ -0.84
SSBP1-213ENST00000496622 LAMC3Q9Y6N6 1575 aa9.81□□□□□ -0.84
SSBP1-213ENST00000496622 HECW2Q9P2P5 1572 aa9.81□□□□□ -0.84
SSBP1-213ENST00000496622 PLCD3Q8N3E9 789 aa9.8□□□□□ -0.84
SSBP1-213ENST00000496622 FBXO3Q9UK99 471 aa9.79□□□□□ -0.84
SSBP1-213ENST00000496622 SOGA1O94964 1423 aa9.78□□□□□ -0.84
SSBP1-213ENST00000496622 BCL11AQ9H165 835 aa9.78□□□□□ -0.84
SSBP1-213ENST00000496622 MNX1P50219 401 aaPredicted RBP9.77□□□□□ -0.85
SSBP1-213ENST00000496622 IFNLR1Q8IU57 520 aaPredicted RBP9.77□□□□□ -0.85
SSBP1-213ENST00000496622 CYB5RLQ6IPT4 315 aa9.76□□□□□ -0.85
SSBP1-213ENST00000496622 RUSC2Q8N2Y8 1516 aa9.76□□□□□ -0.85
SSBP1-213ENST00000496622 WRNQ14191 1432 aaPredicted RBP eCLIP9.75□□□□□ -0.851e-7■□□□□ 10.2
SSBP1-213ENST00000496622 KDM4FA0A1W2PPD8 638 aa9.74□□□□□ -0.85
SSBP1-213ENST00000496622 PPARGC1BQ86YN6 1023 aaKnown RBP9.73□□□□□ -0.85
SSBP1-213ENST00000496622 FARP1Q9Y4F1 1045 aaPredicted RBP9.73□□□□□ -0.85
SSBP1-213ENST00000496622 ARAP1Q96P48 1450 aa9.73□□□□□ -0.85
SSBP1-213ENST00000496622 PCGF6Q9BYE7 350 aa9.73□□□□□ -0.85
SSBP1-213ENST00000496622 EVX2Q03828 476 aa9.71□□□□□ -0.85
SSBP1-213ENST00000496622 RANGAP1P46060 587 aaPredicted RBP9.69□□□□□ -0.86
SSBP1-213ENST00000496622 PDS5BQ9NTI5 1447 aa9.68□□□□□ -0.86
SSBP1-213ENST00000496622 SYNJ1O43426 1573 aa9.68□□□□□ -0.86
SSBP1-213ENST00000496622 KLHL34Q8N239 644 aa9.68□□□□□ -0.86
SSBP1-213ENST00000496622 UBTFP17480 764 aaKnown RBP9.67□□□□□ -0.86
SSBP1-213ENST00000496622 HAX1O00165 279 aa9.66□□□□□ -0.86
SSBP1-213ENST00000496622 KIF21AQ7Z4S6 1674 aa9.66□□□□□ -0.86
SSBP1-213ENST00000496622 NESP48681 1621 aa9.65□□□□□ -0.87
SSBP1-213ENST00000496622 CFTRP13569 1480 aa9.64□□□□□ -0.87
SSBP1-213ENST00000496622 CADPSQ9ULU8 1353 aa9.64□□□□□ -0.87
SSBP1-213ENST00000496622 WDR62O43379 1518 aa9.63□□□□□ -0.87
SSBP1-213ENST00000496622 SYNJ2O15056 1496 aa9.63□□□□□ -0.87
SSBP1-213ENST00000496622 RASEFQ8IZ41 740 aa9.63□□□□□ -0.87
SSBP1-213ENST00000496622 MRC2Q9UBG0 1479 aa9.61□□□□□ -0.87
SSBP1-213ENST00000496622 PLEKHG5O94827 1062 aa9.6□□□□□ -0.87
SSBP1-213ENST00000496622 TSPYL2Q9H2G4 693 aaPredicted RBP9.6□□□□□ -0.87
SSBP1-213ENST00000496622 CUX1P39880 1505 aa9.58□□□□□ -0.88
SSBP1-213ENST00000496622 CD44P16070 742 aaKnown RBP9.58□□□□□ -0.88
SSBP1-213ENST00000496622 PRDM2Q13029 1718 aa9.58□□□□□ -0.88
SSBP1-213ENST00000496622 EIF5BO60841 1220 aaKnown RBP9.57□□□□□ -0.88
SSBP1-213ENST00000496622 NUBP1P53384 320 aa9.57□□□□□ -0.88
SSBP1-213ENST00000496622 FANCD2Q9BXW9 1451 aa9.53□□□□□ -0.88
SSBP1-213ENST00000496622 C19orf67A6NJJ6 358 aa9.53□□□□□ -0.88
SSBP1-213ENST00000496622 TOP2BQ02880 1626 aa9.52□□□□□ -0.88
SSBP1-213ENST00000496622 RAPGEF2Q9Y4G8 1499 aa9.52□□□□□ -0.89
SSBP1-213ENST00000496622 CEP164Q9UPV0 1460 aa9.52□□□□□ -0.89
SSBP1-213ENST00000496622 CEP162Q5TB80 1403 aa9.52□□□□□ -0.89
SSBP1-213ENST00000496622 NPM1P06748 294 aaKnown RBP eCLIP9.51□□□□□ -0.89
SSBP1-213ENST00000496622 ZRANB1Q9UGI0 708 aa9.51□□□□□ -0.89
SSBP1-213ENST00000496622 TRIM26Q12899 539 aaPredicted RBP9.5□□□□□ -0.89
SSBP1-213ENST00000496622 PHF12Q96QT6 1004 aa9.5□□□□□ -0.89
SSBP1-213ENST00000496622 EEA1Q15075 1411 aa9.5□□□□□ -0.89
SSBP1-213ENST00000496622 SPOCK2Q92563 424 aa9.49□□□□□ -0.89
SSBP1-213ENST00000496622 ZBTB47Q9UFB7 747 aaPredicted RBP9.49□□□□□ -0.89
SSBP1-213ENST00000496622 TNIKQ9UKE5 1360 aa9.49□□□□□ -0.89
SSBP1-213ENST00000496622 CIZ1Q9ULV3 898 aaPredicted RBP9.49□□□□□ -0.89
SSBP1-213ENST00000496622 RAD54L2Q9Y4B4 1467 aa9.48□□□□□ -0.89
SSBP1-213ENST00000496622 FGD5Q6ZNL6 1462 aa9.48□□□□□ -0.89
SSBP1-213ENST00000496622 GOLGA3Q08378 1498 aa9.47□□□□□ -0.89
SSBP1-213ENST00000496622 DCAF8Q5TAQ9 597 aa9.47□□□□□ -0.89
SSBP1-213ENST00000496622 PYGBP11216 843 aa9.47□□□□□ -0.89
SSBP1-213ENST00000496622 CCDC61Q9Y6R9 512 aa9.46□□□□□ -0.89
SSBP1-213ENST00000496622 KIF27Q86VH2 1401 aa9.46□□□□□ -0.9
SSBP1-213ENST00000496622 BIVM-ERCC5R4GMW8 1640 aa9.44□□□□□ -0.9
SSBP1-213ENST00000496622 IGF1RP08069 1367 aa9.44□□□□□ -0.9
SSBP1-213ENST00000496622 TDRD9Q8NDG6 1382 aaKnown RBP9.44□□□□□ -0.9
SSBP1-213ENST00000496622 FAM212AQ96EL1 285 aa9.43□□□□□ -0.9
SSBP1-213ENST00000496622 URB2Q14146 1524 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms