RNA–Protein interactions for RNA: ENST00000494780.1

COL27A1-208, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 4

Gene COL27A1, Length 514 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-208ENST00000494780 IGF1RP08069 1367 aa40.65■■■■■ 4.1
COL27A1-208ENST00000494780 CUL7Q14999 1698 aa40.59■■■■■ 4.09
COL27A1-208ENST00000494780 KIAA0586Q9BVV6 1533 aa40.53■■■■■ 4.08
COL27A1-208ENST00000494780 CARMIL1Q5VZK9 1371 aa40.39■■■■■ 4.06
COL27A1-208ENST00000494780 KIF13AQ9H1H9 1805 aa40.35■■■■■ 4.05
COL27A1-208ENST00000494780 NPM1P06748 294 aaKnown RBP eCLIP40.34■■■■■ 4.05
COL27A1-208ENST00000494780 ADCY10Q96PN6 1610 aa40.28■■■■■ 4.04
COL27A1-208ENST00000494780 MAPKBP1O60336 1514 aa40.27■■■■■ 4.04
COL27A1-208ENST00000494780 ABCC10Q5T3U5 1492 aa40.23■■■■■ 4.03
COL27A1-208ENST00000494780 FAM69CQ0P6D2 419 aa40.19■■■■■ 4.02
COL27A1-208ENST00000494780 PTPRGP23470 1445 aa40.15■■■■■ 4.02
COL27A1-208ENST00000494780 AEBP2Q6ZN18 517 aaPredicted RBP40.14■■■■■ 4.02
COL27A1-208ENST00000494780 CARMIL2Q6F5E8 1435 aa40.14■■■■■ 4.02
COL27A1-208ENST00000494780 IQGAP2Q13576 1575 aa40.12■■■■■ 4.01
COL27A1-208ENST00000494780 DIP2BQ9P265 1576 aa40.1■■■■■ 4.01
COL27A1-208ENST00000494780 TNIKQ9UKE5 1360 aa40.09■■■■■ 4.01
COL27A1-208ENST00000494780 RAPGEF2Q9Y4G8 1499 aa40.02■■■■■ 4
COL27A1-208ENST00000494780 TTBK1Q5TCY1 1321 aaPredicted RBP39.99■■■■□ 3.99
COL27A1-208ENST00000494780 ABCC2Q92887 1545 aa39.94■■■■□ 3.98
COL27A1-208ENST00000494780 DISP1Q96F81 1524 aa39.93■■■■□ 3.98
COL27A1-208ENST00000494780 UGGT2Q9NYU1 1516 aa39.89■■■■□ 3.98
COL27A1-208ENST00000494780 UHRF1BP1LA0JNW5 1464 aa39.88■■■■□ 3.98
COL27A1-208ENST00000494780 UACAQ9BZF9 1416 aa39.85■■■■□ 3.97
COL27A1-208ENST00000494780 ASXL2Q76L83 1435 aa39.79■■■■□ 3.96
COL27A1-208ENST00000494780 PLB1Q6P1J6 1458 aa39.79■■■■□ 3.96
COL27A1-208ENST00000494780 TSPOAP1O95153 1857 aa39.77■■■■□ 3.96
COL27A1-208ENST00000494780 KDM6BO15054 1643 aa39.76■■■■□ 3.95
COL27A1-208ENST00000494780 KIAA0556O60303 1618 aa39.75■■■■□ 3.95
COL27A1-208ENST00000494780 GLI2P10070 1586 aa39.7■■■■□ 3.95
COL27A1-208ENST00000494780 KDM5BQ9UGL1 1544 aa39.69■■■■□ 3.94
COL27A1-208ENST00000494780 CTTNBP2Q8WZ74 1663 aa39.67■■■■□ 3.94
COL27A1-208ENST00000494780 PRXQ9BXM0 1461 aa39.62■■■■□ 3.93
COL27A1-208ENST00000494780 GOLGA3Q08378 1498 aa39.58■■■■□ 3.93
COL27A1-208ENST00000494780 ZCCHC11Q5TAX3 1644 aaKnown RBP39.57■■■■□ 3.92
COL27A1-208ENST00000494780 EPRSP07814 1512 aaKnown RBP39.55■■■■□ 3.92
COL27A1-208ENST00000494780 PPRC1Q5VV67 1664 aaKnown RBP39.54■■■■□ 3.92
COL27A1-208ENST00000494780 MAP3K4Q9Y6R4 1608 aa39.45■■■■□ 3.91
COL27A1-208ENST00000494780 WDR7Q9Y4E6 1490 aa39.41■■■■□ 3.9
COL27A1-208ENST00000494780 ABCA8O94911 1581 aa39.4■■■■□ 3.9
COL27A1-208ENST00000494780 TEX14Q8IWB6 1497 aa39.37■■■■□ 3.89
COL27A1-208ENST00000494780 KDM4FA0A1W2PPD8 638 aa39.35■■■■□ 3.89
COL27A1-208ENST00000494780 CSRNP3Q8WYN3 585 aa39.31■■■■□ 3.88
COL27A1-208ENST00000494780 COL17A1Q9UMD9 1497 aaPredicted RBP39.29■■■■□ 3.88
COL27A1-208ENST00000494780 FAM9AQ8IZU1 332 aaPredicted RBP39.25■■■■□ 3.87
COL27A1-208ENST00000494780 KCNH8Q96L42 1107 aa39.18■■■■□ 3.86
COL27A1-208ENST00000494780 EEA1Q15075 1411 aa39.17■■■■□ 3.86
COL27A1-208ENST00000494780 CD109Q6YHK3 1445 aa39.17■■■■□ 3.86
COL27A1-208ENST00000494780 CFAP43Q8NDM7 1665 aa39.17■■■■□ 3.86
COL27A1-208ENST00000494780 P3H3Q8IVL6 736 aa39.17■■■■□ 3.86
COL27A1-208ENST00000494780 MAGI3Q5TCQ9 1506 aa39.15■■■■□ 3.86
COL27A1-208ENST00000494780 SAMD9Q5K651 1589 aa39.12■■■■□ 3.85
COL27A1-208ENST00000494780 ATP10BO94823 1461 aa39.07■■■■□ 3.85
COL27A1-208ENST00000494780 ADGRL1O94910 1474 aa39.05■■■■□ 3.84
COL27A1-208ENST00000494780 ARID3CA6NKF2 412 aa39.02■■■■□ 3.84
COL27A1-208ENST00000494780 RAPGEF6Q8TEU7 1601 aa38.97■■■■□ 3.83
COL27A1-208ENST00000494780 ABCA9Q8IUA7 1624 aa38.87■■■■□ 3.81
COL27A1-208ENST00000494780 RANGAP1P46060 587 aaPredicted RBP38.86■■■■□ 3.81
COL27A1-208ENST00000494780 ARAP3Q8WWN8 1544 aa38.85■■■■□ 3.81
COL27A1-208ENST00000494780 FHOD3Q2V2M9 1422 aa38.84■■■■□ 3.81
COL27A1-208ENST00000494780 KIF21BO75037 1637 aa38.83■■■■□ 3.81
COL27A1-208ENST00000494780 NUP153P49790 1475 aaKnown RBP38.83■■■■□ 3.81
COL27A1-208ENST00000494780 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.82■■■■□ 3.8
COL27A1-208ENST00000494780 HNRNPUL2Q1KMD3 747 aaKnown RBP38.82■■■■□ 3.8
COL27A1-208ENST00000494780 PHLDB1Q86UU1 1377 aa38.81■■■■□ 3.8
COL27A1-208ENST00000494780 EFCAB5A4FU69 1503 aa38.75■■■■□ 3.79
COL27A1-208ENST00000494780 NEO1Q92859 1461 aa38.7■■■■□ 3.79
COL27A1-208ENST00000494780 PLEKHD1A6NEE1 506 aa38.65■■■■□ 3.78
COL27A1-208ENST00000494780 RAPGEF3O95398 923 aa38.58■■■■□ 3.77
COL27A1-208ENST00000494780 CHIC1Q5VXU3 224 aa38.56■■■■□ 3.76
COL27A1-208ENST00000494780 UBTFP17480 764 aaKnown RBP38.53■■■■□ 3.76
COL27A1-208ENST00000494780 HECW2Q9P2P5 1572 aa38.5■■■■□ 3.75
COL27A1-208ENST00000494780 FRMPD1Q5SYB0 1578 aa38.48■■■■□ 3.75
COL27A1-208ENST00000494780 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38.48■■■■□ 3.75
COL27A1-208ENST00000494780 EHMT2Q96KQ7 1210 aa38.46■■■■□ 3.75
COL27A1-208ENST00000494780 CDK13Q14004 1512 aaKnown RBP38.43■■■■□ 3.74
COL27A1-208ENST00000494780 FMN1Q68DA7 1419 aa38.42■■■■□ 3.74
COL27A1-208ENST00000494780 AKNAQ7Z591 1439 aa38.42■■■■□ 3.74
COL27A1-208ENST00000494780 CFAP74Q9C0B2 1584 aa38.42■■■■□ 3.74
COL27A1-208ENST00000494780 FANCAO15360 1455 aa38.41■■■■□ 3.74
COL27A1-208ENST00000494780 DENND4BO75064 1496 aaPredicted RBP38.41■■■■□ 3.74
COL27A1-208ENST00000494780 TTC37Q6PGP7 1564 aa38.4■■■■□ 3.74
COL27A1-208ENST00000494780 ARHGAP35Q9NRY4 1499 aa38.39■■■■□ 3.74
COL27A1-208ENST00000494780 ADAMTSL3P82987 1691 aa38.36■■■■□ 3.73
COL27A1-208ENST00000494780 HECW1Q76N89 1606 aa38.34■■■■□ 3.73
COL27A1-208ENST00000494780 RICTORQ6R327 1708 aa38.34■■■■□ 3.73
COL27A1-208ENST00000494780 ARHGEF40Q8TER5 1519 aa38.31■■■■□ 3.72
COL27A1-208ENST00000494780 ATP1B4Q9UN42 357 aaPredicted RBP38.3■■■■□ 3.72
COL27A1-208ENST00000494780 ARID4BQ4LE39 1312 aaPredicted RBP38.29■■■■□ 3.72
COL27A1-208ENST00000494780 PTPRMP28827 1452 aa38.28■■■■□ 3.72
COL27A1-208ENST00000494780 BCORL1Q5H9F3 1711 aa38.28■■■■□ 3.72
COL27A1-208ENST00000494780 PLCH2O75038 1416 aa38.26■■■■□ 3.72
COL27A1-208ENST00000494780 CDK11AQ9UQ88 783 aaPredicted RBP38.25■■■■□ 3.71
COL27A1-208ENST00000494780 ZMYM4Q5VZL5 1548 aa38.23■■■■□ 3.71
COL27A1-208ENST00000494780 MAGI2Q86UL8 1455 aa38.17■■■■□ 3.7
COL27A1-208ENST00000494780 MADDQ8WXG6 1647 aa38.17■■■■□ 3.7
COL27A1-208ENST00000494780 ZFYVE16Q7Z3T8 1539 aa38.16■■■■□ 3.7
COL27A1-208ENST00000494780 SCAPERQ9BY12 1400 aa38.15■■■■□ 3.7
COL27A1-208ENST00000494780 ILDR1Q86SU0 546 aaPredicted RBP38.14■■■■□ 3.7
COL27A1-208ENST00000494780 TROQ12816 1431 aaPredicted RBP38.12■■■■□ 3.69
COL27A1-208ENST00000494780 POGZQ7Z3K3 1410 aa38.12■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms