RNA–Protein interactions for RNA: ENST00000494069.1

LRCH3-219, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 783 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-219ENST00000494069 ERICH3Q5RHP9 1530 aa14.9□□□□□ -0.02
LRCH3-219ENST00000494069 CEP170Q5SW79 1584 aa14.9□□□□□ -0.02
LRCH3-219ENST00000494069 NUP160Q12769 1436 aa14.89□□□□□ -0.03
LRCH3-219ENST00000494069 ERCC6L2Q5T890 1561 aa14.86□□□□□ -0.03
LRCH3-219ENST00000494069 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.04
LRCH3-219ENST00000494069 IGF1RP08069 1367 aa14.83□□□□□ -0.04
LRCH3-219ENST00000494069 KIF27Q86VH2 1401 aa14.81□□□□□ -0.04
LRCH3-219ENST00000494069 JPH4Q96JJ6 628 aa14.78□□□□□ -0.04
LRCH3-219ENST00000494069 SHROOM2Q13796 1616 aa14.77□□□□□ -0.04
LRCH3-219ENST00000494069 PRG4Q92954 1404 aaPredicted RBP14.75□□□□□ -0.05
LRCH3-219ENST00000494069 RUSC2Q8N2Y8 1516 aa14.72□□□□□ -0.05
LRCH3-219ENST00000494069 CARMIL1Q5VZK9 1371 aa14.72□□□□□ -0.05
LRCH3-219ENST00000494069 CUL7Q14999 1698 aa14.7□□□□□ -0.06
LRCH3-219ENST00000494069 KIAA0586Q9BVV6 1533 aa14.67□□□□□ -0.06
LRCH3-219ENST00000494069 TTBK1Q5TCY1 1321 aaPredicted RBP14.6□□□□□ -0.07
LRCH3-219ENST00000494069 RAPGEF2Q9Y4G8 1499 aa14.57□□□□□ -0.08
LRCH3-219ENST00000494069 ADCY10Q96PN6 1610 aa14.55□□□□□ -0.08
LRCH3-219ENST00000494069 PTPRGP23470 1445 aa14.54□□□□□ -0.08
LRCH3-219ENST00000494069 IQGAP2Q13576 1575 aa14.54□□□□□ -0.08
LRCH3-219ENST00000494069 NPM1P06748 294 aaKnown RBP eCLIP14.52□□□□□ -0.09
LRCH3-219ENST00000494069 CARMIL2Q6F5E8 1435 aa14.51□□□□□ -0.09
LRCH3-219ENST00000494069 TNIKQ9UKE5 1360 aa14.51□□□□□ -0.09
LRCH3-219ENST00000494069 DISP1Q96F81 1524 aa14.51□□□□□ -0.09
LRCH3-219ENST00000494069 FAM69CQ0P6D2 419 aa14.48□□□□□ -0.09
LRCH3-219ENST00000494069 KIF13AQ9H1H9 1805 aa14.48□□□□□ -0.09
LRCH3-219ENST00000494069 PRXQ9BXM0 1461 aa14.47□□□□□ -0.09
LRCH3-219ENST00000494069 UGGT2Q9NYU1 1516 aa14.46□□□□□ -0.09
LRCH3-219ENST00000494069 MAPKBP1O60336 1514 aa14.46□□□□□ -0.1
LRCH3-219ENST00000494069 ABCC10Q5T3U5 1492 aa14.45□□□□□ -0.1
LRCH3-219ENST00000494069 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
LRCH3-219ENST00000494069 UACAQ9BZF9 1416 aa14.42□□□□□ -0.1
LRCH3-219ENST00000494069 DIP2BQ9P265 1576 aa14.42□□□□□ -0.1
LRCH3-219ENST00000494069 KIAA0556O60303 1618 aa14.41□□□□□ -0.1
LRCH3-219ENST00000494069 ABCC2Q92887 1545 aa14.41□□□□□ -0.1
LRCH3-219ENST00000494069 FAM9AQ8IZU1 332 aaPredicted RBP14.4□□□□□ -0.1
LRCH3-219ENST00000494069 CTTNBP2Q8WZ74 1663 aa14.39□□□□□ -0.11
LRCH3-219ENST00000494069 UHRF1BP1LA0JNW5 1464 aa14.39□□□□□ -0.11
LRCH3-219ENST00000494069 ASXL2Q76L83 1435 aa14.38□□□□□ -0.11
LRCH3-219ENST00000494069 POTEDQ86YR6 584 aa14.37□□□□□ -0.11
LRCH3-219ENST00000494069 P3H3Q8IVL6 736 aa14.36□□□□□ -0.11
LRCH3-219ENST00000494069 PLB1Q6P1J6 1458 aa14.36□□□□□ -0.11
LRCH3-219ENST00000494069 KDM5BQ9UGL1 1544 aa14.34□□□□□ -0.11
LRCH3-219ENST00000494069 GOLGA3Q08378 1498 aa14.33□□□□□ -0.12
LRCH3-219ENST00000494069 TSPOAP1O95153 1857 aa14.33□□□□□ -0.12
LRCH3-219ENST00000494069 EEA1Q15075 1411 aa14.32□□□□□ -0.12
LRCH3-219ENST00000494069 ZCCHC11Q5TAX3 1644 aaKnown RBP14.31□□□□□ -0.12
LRCH3-219ENST00000494069 RANGAP1P46060 587 aaPredicted RBP14.31□□□□□ -0.12
LRCH3-219ENST00000494069 ABCA8O94911 1581 aa14.29□□□□□ -0.12
LRCH3-219ENST00000494069 ARID3CA6NKF2 412 aa14.28□□□□□ -0.12
LRCH3-219ENST00000494069 EPRSP07814 1512 aaKnown RBP14.28□□□□□ -0.12
LRCH3-219ENST00000494069 EHMT2Q96KQ7 1210 aa14.28□□□□□ -0.12
LRCH3-219ENST00000494069 GLI2P10070 1586 aa14.27□□□□□ -0.12
LRCH3-219ENST00000494069 PPRC1Q5VV67 1664 aaKnown RBP14.24□□□□□ -0.13
LRCH3-219ENST00000494069 KDM6BO15054 1643 aa14.24□□□□□ -0.13
LRCH3-219ENST00000494069 KCNH8Q96L42 1107 aa14.24□□□□□ -0.13
LRCH3-219ENST00000494069 WDR7Q9Y4E6 1490 aa14.24□□□□□ -0.13
LRCH3-219ENST00000494069 SAMD9Q5K651 1589 aa14.23□□□□□ -0.13
LRCH3-219ENST00000494069 ATP10BO94823 1461 aa14.2□□□□□ -0.14
LRCH3-219ENST00000494069 COL17A1Q9UMD9 1497 aaPredicted RBP14.2□□□□□ -0.14
LRCH3-219ENST00000494069 MAP3K4Q9Y6R4 1608 aa14.2□□□□□ -0.14
LRCH3-219ENST00000494069 FHOD3Q2V2M9 1422 aa14.2□□□□□ -0.14
LRCH3-219ENST00000494069 KIF21BO75037 1637 aa14.19□□□□□ -0.14
LRCH3-219ENST00000494069 UBTFP17480 764 aaKnown RBP14.16□□□□□ -0.14
LRCH3-219ENST00000494069 CD109Q6YHK3 1445 aa14.15□□□□□ -0.14
LRCH3-219ENST00000494069 RAPGEF6Q8TEU7 1601 aa14.15□□□□□ -0.14
LRCH3-219ENST00000494069 NUP153P49790 1475 aaKnown RBP14.13□□□□□ -0.15
LRCH3-219ENST00000494069 TEX14Q8IWB6 1497 aa14.13□□□□□ -0.15
LRCH3-219ENST00000494069 KDM4FA0A1W2PPD8 638 aa14.13□□□□□ -0.15
LRCH3-219ENST00000494069 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.13□□□□□ -0.15
LRCH3-219ENST00000494069 HNRNPUL2Q1KMD3 747 aaKnown RBP14.13□□□□□ -0.15
LRCH3-219ENST00000494069 MAPK8IP2Q13387 824 aaPredicted RBP14.12□□□□□ -0.15
LRCH3-219ENST00000494069 MAGI3Q5TCQ9 1506 aa14.1□□□□□ -0.15
LRCH3-219ENST00000494069 CFAP43Q8NDM7 1665 aa14.09□□□□□ -0.15
LRCH3-219ENST00000494069 EFCAB5A4FU69 1503 aa14.09□□□□□ -0.15
LRCH3-219ENST00000494069 ARHGAP35Q9NRY4 1499 aa14.06□□□□□ -0.16
LRCH3-219ENST00000494069 PLEKHD1A6NEE1 506 aa14.04□□□□□ -0.16
LRCH3-219ENST00000494069 ATP1B4Q9UN42 357 aaPredicted RBP14.04□□□□□ -0.16
LRCH3-219ENST00000494069 ABCA9Q8IUA7 1624 aa14.04□□□□□ -0.16
LRCH3-219ENST00000494069 CDK13Q14004 1512 aaKnown RBP14.03□□□□□ -0.16
LRCH3-219ENST00000494069 ADGRL1O94910 1474 aa13.99□□□□□ -0.17
LRCH3-219ENST00000494069 RAPGEF3O95398 923 aa13.99□□□□□ -0.17
LRCH3-219ENST00000494069 ARAP3Q8WWN8 1544 aa13.99□□□□□ -0.17
LRCH3-219ENST00000494069 FMN1Q68DA7 1419 aa13.98□□□□□ -0.17
LRCH3-219ENST00000494069 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.96□□□□□ -0.17
LRCH3-219ENST00000494069 SCAF1Q9H7N4 1312 aaKnown RBP13.95□□□□□ -0.18
LRCH3-219ENST00000494069 NEO1Q92859 1461 aa13.95□□□□□ -0.18
LRCH3-219ENST00000494069 PPP4R3CPQ6ZMV5 832 aa13.95□□□□□ -0.18
LRCH3-219ENST00000494069 PHLDB1Q86UU1 1377 aa13.95□□□□□ -0.18
LRCH3-219ENST00000494069 TTC37Q6PGP7 1564 aa13.94□□□□□ -0.18
LRCH3-219ENST00000494069 HECW1Q76N89 1606 aa13.93□□□□□ -0.18
LRCH3-219ENST00000494069 AKNAQ7Z591 1439 aa13.91□□□□□ -0.18
LRCH3-219ENST00000494069 FANCAO15360 1455 aa13.91□□□□□ -0.18
LRCH3-219ENST00000494069 FRMPD1Q5SYB0 1578 aa13.91□□□□□ -0.18
LRCH3-219ENST00000494069 LRRIQ1Q96JM4 1722 aa13.9□□□□□ -0.18
LRCH3-219ENST00000494069 CDK11AQ9UQ88 783 aaPredicted RBP13.89□□□□□ -0.19
LRCH3-219ENST00000494069 DENND4BO75064 1496 aaPredicted RBP13.88□□□□□ -0.19
LRCH3-219ENST00000494069 PLCH2O75038 1416 aa13.88□□□□□ -0.19
LRCH3-219ENST00000494069 CLIP1P30622 1438 aa13.88□□□□□ -0.19
LRCH3-219ENST00000494069 TROQ12816 1431 aaPredicted RBP13.88□□□□□ -0.19
LRCH3-219ENST00000494069 CASKIN1Q8WXD9 1431 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms