RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 NUP160Q12769 1436 aa18.71■□□□□ 0.59
PDLIM1-205ENST00000493949 KDM4FA0A1W2PPD8 638 aa18.69■□□□□ 0.58
PDLIM1-205ENST00000493949 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
PDLIM1-205ENST00000493949 ABCC10Q5T3U5 1492 aa18.65■□□□□ 0.58
PDLIM1-205ENST00000493949 ADAMTS12P58397 1594 aa18.64■□□□□ 0.57
PDLIM1-205ENST00000493949 MAPKBP1O60336 1514 aa18.6■□□□□ 0.57
PDLIM1-205ENST00000493949 KDM6BO15054 1643 aa18.6■□□□□ 0.57
PDLIM1-205ENST00000493949 DIP2BQ9P265 1576 aa18.59■□□□□ 0.57
PDLIM1-205ENST00000493949 FAM69CQ0P6D2 419 aa18.57■□□□□ 0.56
PDLIM1-205ENST00000493949 FHAD1B1AJZ9 1412 aa18.53■□□□□ 0.56
PDLIM1-205ENST00000493949 PRG4Q92954 1404 aaPredicted RBP18.51■□□□□ 0.55
PDLIM1-205ENST00000493949 TSPOAP1O95153 1857 aa18.48■□□□□ 0.55
PDLIM1-205ENST00000493949 ADCY10Q96PN6 1610 aa18.47■□□□□ 0.55
PDLIM1-205ENST00000493949 ERICH3Q5RHP9 1530 aa18.45■□□□□ 0.54
PDLIM1-205ENST00000493949 NPM1P06748 294 aaKnown RBP eCLIP18.45■□□□□ 0.54
PDLIM1-205ENST00000493949 JPH4Q96JJ6 628 aa18.44■□□□□ 0.54
PDLIM1-205ENST00000493949 WRNQ14191 1432 aaPredicted RBP eCLIP18.43■□□□□ 0.54
PDLIM1-205ENST00000493949 RUSC2Q8N2Y8 1516 aa18.39■□□□□ 0.54
PDLIM1-205ENST00000493949 ADGRL1O94910 1474 aa18.39■□□□□ 0.53
PDLIM1-205ENST00000493949 HECW2Q9P2P5 1572 aa18.38■□□□□ 0.53
PDLIM1-205ENST00000493949 BIVM-ERCC5R4GMW8 1640 aa18.37■□□□□ 0.53
PDLIM1-205ENST00000493949 TOP2BQ02880 1626 aa18.34■□□□□ 0.53
PDLIM1-205ENST00000493949 PPRC1Q5VV67 1664 aaKnown RBP18.33■□□□□ 0.52
PDLIM1-205ENST00000493949 GLI2P10070 1586 aa18.27■□□□□ 0.52
PDLIM1-205ENST00000493949 KIAA0586Q9BVV6 1533 aa18.22■□□□□ 0.51
PDLIM1-205ENST00000493949 FBXO41Q8TF61 875 aa18.21■□□□□ 0.51
PDLIM1-205ENST00000493949 COL17A1Q9UMD9 1497 aaPredicted RBP18.2■□□□□ 0.5
PDLIM1-205ENST00000493949 PLB1Q6P1J6 1458 aa18.19■□□□□ 0.5
PDLIM1-205ENST00000493949 ABCC2Q92887 1545 aa18.18■□□□□ 0.5
PDLIM1-205ENST00000493949 ASXL2Q76L83 1435 aa18.15■□□□□ 0.5
PDLIM1-205ENST00000493949 MAP3K4Q9Y6R4 1608 aa18.15■□□□□ 0.5
PDLIM1-205ENST00000493949 CUL7Q14999 1698 aa18.13■□□□□ 0.49
PDLIM1-205ENST00000493949 PTPRGP23470 1445 aa18.13■□□□□ 0.49
PDLIM1-205ENST00000493949 UHRF1BP1LA0JNW5 1464 aa18.1■□□□□ 0.49
PDLIM1-205ENST00000493949 TEX14Q8IWB6 1497 aa18.09■□□□□ 0.49
PDLIM1-205ENST00000493949 EPRSP07814 1512 aaKnown RBP18.07■□□□□ 0.48
PDLIM1-205ENST00000493949 TNIKQ9UKE5 1360 aa18.05■□□□□ 0.48
PDLIM1-205ENST00000493949 CARMIL2Q6F5E8 1435 aa18.01■□□□□ 0.47
PDLIM1-205ENST00000493949 KDM5BQ9UGL1 1544 aa18.01■□□□□ 0.47
PDLIM1-205ENST00000493949 IGF1RP08069 1367 aa18■□□□□ 0.47
PDLIM1-205ENST00000493949 UACAQ9BZF9 1416 aa17.98■□□□□ 0.47
PDLIM1-205ENST00000493949 SUPT5HO00267 1087 aaKnown RBP17.96■□□□□ 0.47
PDLIM1-205ENST00000493949 ZCCHC11Q5TAX3 1644 aaKnown RBP17.96■□□□□ 0.47
PDLIM1-205ENST00000493949 IQGAP2Q13576 1575 aa17.93■□□□□ 0.46
PDLIM1-205ENST00000493949 KIF21BO75037 1637 aa17.92■□□□□ 0.46
PDLIM1-205ENST00000493949 TTBK1Q5TCY1 1321 aaPredicted RBP17.92■□□□□ 0.46
PDLIM1-205ENST00000493949 LMTK3Q96Q04 1460 aa17.91■□□□□ 0.46
PDLIM1-205ENST00000493949 MAGI3Q5TCQ9 1506 aa17.91■□□□□ 0.46
PDLIM1-205ENST00000493949 KIF27Q86VH2 1401 aa17.9■□□□□ 0.46
PDLIM1-205ENST00000493949 CFAP43Q8NDM7 1665 aa17.9■□□□□ 0.46
PDLIM1-205ENST00000493949 DISP1Q96F81 1524 aa17.9■□□□□ 0.46
PDLIM1-205ENST00000493949 WDR7Q9Y4E6 1490 aa17.88■□□□□ 0.45
PDLIM1-205ENST00000493949 ADAMTSL3P82987 1691 aa17.87■□□□□ 0.45
PDLIM1-205ENST00000493949 PTPRMP28827 1452 aa17.85■□□□□ 0.45
PDLIM1-205ENST00000493949 CARMIL1Q5VZK9 1371 aa17.85■□□□□ 0.45
PDLIM1-205ENST00000493949 PCF11O94913 1555 aaKnown RBP17.82■□□□□ 0.44
PDLIM1-205ENST00000493949 UGGT2Q9NYU1 1516 aa17.82■□□□□ 0.44
PDLIM1-205ENST00000493949 CD109Q6YHK3 1445 aa17.81■□□□□ 0.44
PDLIM1-205ENST00000493949 ARAP3Q8WWN8 1544 aa17.8■□□□□ 0.44
PDLIM1-205ENST00000493949 KIAA0556O60303 1618 aa17.79■□□□□ 0.44
PDLIM1-205ENST00000493949 SOCS7O14512 581 aa17.76■□□□□ 0.43
PDLIM1-205ENST00000493949 BCORL1Q5H9F3 1711 aa17.75■□□□□ 0.43
PDLIM1-205ENST00000493949 MAPK8IP2Q13387 824 aaPredicted RBP17.74■□□□□ 0.43
PDLIM1-205ENST00000493949 ILDR2Q71H61 639 aa17.71■□□□□ 0.43
PDLIM1-205ENST00000493949 DMRT2Q9Y5R5 561 aa17.71■□□□□ 0.43
PDLIM1-205ENST00000493949 MADDQ8WXG6 1647 aa17.71■□□□□ 0.43
PDLIM1-205ENST00000493949 ABCA8O94911 1581 aa17.68■□□□□ 0.42
PDLIM1-205ENST00000493949 PHLDB1Q86UU1 1377 aa17.67■□□□□ 0.42
PDLIM1-205ENST00000493949 CERKQ8TCT0 537 aa17.66■□□□□ 0.42
PDLIM1-205ENST00000493949 KCNH8Q96L42 1107 aa17.66■□□□□ 0.42
PDLIM1-205ENST00000493949 DISP3Q9P2K9 1392 aa17.64■□□□□ 0.41
PDLIM1-205ENST00000493949 RIMS1Q86UR5 1692 aaKnown RBP17.62■□□□□ 0.41
PDLIM1-205ENST00000493949 RAPGEF2Q9Y4G8 1499 aa17.62■□□□□ 0.41
PDLIM1-205ENST00000493949 ABCA9Q8IUA7 1624 aa17.61■□□□□ 0.41
PDLIM1-205ENST00000493949 SCAF1Q9H7N4 1312 aaKnown RBP17.6■□□□□ 0.41
PDLIM1-205ENST00000493949 FRMPD1Q5SYB0 1578 aa17.59■□□□□ 0.41
PDLIM1-205ENST00000493949 CTTNBP2Q8WZ74 1663 aa17.58■□□□□ 0.41
PDLIM1-205ENST00000493949 NEO1Q92859 1461 aa17.58■□□□□ 0.41
PDLIM1-205ENST00000493949 GOLGA3Q08378 1498 aa17.56■□□□□ 0.4
PDLIM1-205ENST00000493949 RAPGEF3O95398 923 aa17.55■□□□□ 0.4
PDLIM1-205ENST00000493949 HSPA2P54652 639 aa17.55■□□□□ 0.4
PDLIM1-205ENST00000493949 ARHGEF40Q8TER5 1519 aa17.54■□□□□ 0.4
PDLIM1-205ENST00000493949 SPATA31D1Q6ZQQ2 1576 aa17.53■□□□□ 0.4
PDLIM1-205ENST00000493949 ARID4BQ4LE39 1312 aaPredicted RBP17.51■□□□□ 0.39
PDLIM1-205ENST00000493949 ATP10BO94823 1461 aa17.5■□□□□ 0.39
PDLIM1-205ENST00000493949 RICTORQ6R327 1708 aa17.5■□□□□ 0.39
PDLIM1-205ENST00000493949 POGZQ7Z3K3 1410 aa17.45■□□□□ 0.38
PDLIM1-205ENST00000493949 TTC37Q6PGP7 1564 aa17.45■□□□□ 0.38
PDLIM1-205ENST00000493949 FANCAO15360 1455 aa17.44■□□□□ 0.38
PDLIM1-205ENST00000493949 SIGLEC1Q9BZZ2 1709 aa17.44■□□□□ 0.38
PDLIM1-205ENST00000493949 FER1L4A9Z1Z3 1794 aa17.44■□□□□ 0.38
PDLIM1-205ENST00000493949 PREX1Q8TCU6 1659 aa17.44■□□□□ 0.38
PDLIM1-205ENST00000493949 STRCQ7RTU9 1775 aa17.43■□□□□ 0.38
PDLIM1-205ENST00000493949 FHOD3Q2V2M9 1422 aa17.43■□□□□ 0.38
PDLIM1-205ENST00000493949 ZMYM4Q5VZL5 1548 aa17.42■□□□□ 0.38
PDLIM1-205ENST00000493949 YEATS2Q9ULM3 1422 aa17.4■□□□□ 0.38
PDLIM1-205ENST00000493949 DENND4BO75064 1496 aaPredicted RBP17.4■□□□□ 0.38
PDLIM1-205ENST00000493949 AKNAQ7Z591 1439 aa17.39■□□□□ 0.38
PDLIM1-205ENST00000493949 SETD1BQ9UPS6 1966 aaKnown RBP17.38■□□□□ 0.37
PDLIM1-205ENST00000493949 CFAP74Q9C0B2 1584 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms