RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 CLASP1Q7Z460 1538 aa18.37■□□□□ 0.53
BRCA1-222ENST00000493919 FAM9AQ8IZU1 332 aaPredicted RBP18.36■□□□□ 0.53
BRCA1-222ENST00000493919 NUP160Q12769 1436 aa18.35■□□□□ 0.53
BRCA1-222ENST00000493919 EEA1Q15075 1411 aa18.34■□□□□ 0.53
BRCA1-222ENST00000493919 RAPGEF2Q9Y4G8 1499 aa18.32■□□□□ 0.52
BRCA1-222ENST00000493919 CSRNP3Q8WYN3 585 aa18.28■□□□□ 0.52
BRCA1-222ENST00000493919 ARHGEF11O15085 1522 aa18.27■□□□□ 0.52
BRCA1-222ENST00000493919 RIMBP3CA6NJZ7 1639 aa18.27■□□□□ 0.51
BRCA1-222ENST00000493919 RIMBP3BA6NNM3 1639 aa18.27■□□□□ 0.51
BRCA1-222ENST00000493919 RIMBP3Q9UFD9 1639 aa18.27■□□□□ 0.51
BRCA1-222ENST00000493919 PRXQ9BXM0 1461 aa18.26■□□□□ 0.51
BRCA1-222ENST00000493919 KIAA0586Q9BVV6 1533 aa18.21■□□□□ 0.51
BRCA1-222ENST00000493919 SHROOM2Q13796 1616 aa18.2■□□□□ 0.5
BRCA1-222ENST00000493919 CTTNBP2Q8WZ74 1663 aa18.2■□□□□ 0.5
BRCA1-222ENST00000493919 IQGAP2Q13576 1575 aa18.19■□□□□ 0.5
BRCA1-222ENST00000493919 KIF21BO75037 1637 aa18.17■□□□□ 0.5
BRCA1-222ENST00000493919 ERCC6L2Q5T890 1561 aa18.17■□□□□ 0.5
BRCA1-222ENST00000493919 EHMT2Q96KQ7 1210 aa18.16■□□□□ 0.5
BRCA1-222ENST00000493919 JPH4Q96JJ6 628 aa18.15■□□□□ 0.5
BRCA1-222ENST00000493919 PRG4Q92954 1404 aaPredicted RBP18.14■□□□□ 0.49
BRCA1-222ENST00000493919 ARAP1Q96P48 1450 aa18.14■□□□□ 0.49
BRCA1-222ENST00000493919 GOLGA3Q08378 1498 aa18.09■□□□□ 0.49
BRCA1-222ENST00000493919 CYB5RLQ6IPT4 315 aa18.08■□□□□ 0.49
BRCA1-222ENST00000493919 EIF5BO60841 1220 aaKnown RBP18.08■□□□□ 0.48
BRCA1-222ENST00000493919 HRCP23327 699 aa18.05■□□□□ 0.48
BRCA1-222ENST00000493919 UGGT2Q9NYU1 1516 aa18.05■□□□□ 0.48
BRCA1-222ENST00000493919 CARMIL2Q6F5E8 1435 aa18.03■□□□□ 0.48
BRCA1-222ENST00000493919 UBTFP17480 764 aaKnown RBP18.03■□□□□ 0.48
BRCA1-222ENST00000493919 DISP1Q96F81 1524 aa18.01■□□□□ 0.47
BRCA1-222ENST00000493919 KIAA0556O60303 1618 aa18.01■□□□□ 0.47
BRCA1-222ENST00000493919 RANGAP1P46060 587 aaPredicted RBP18.01■□□□□ 0.47
BRCA1-222ENST00000493919 TNIKQ9UKE5 1360 aa17.95■□□□□ 0.46
BRCA1-222ENST00000493919 PTPRGP23470 1445 aa17.93■□□□□ 0.46
BRCA1-222ENST00000493919 SAMD9Q5K651 1589 aa17.92■□□□□ 0.46
BRCA1-222ENST00000493919 P3H3Q8IVL6 736 aa17.91■□□□□ 0.46
BRCA1-222ENST00000493919 SCAF1Q9H7N4 1312 aaKnown RBP17.88■□□□□ 0.45
BRCA1-222ENST00000493919 EFCAB5A4FU69 1503 aa17.88■□□□□ 0.45
BRCA1-222ENST00000493919 ADCY10Q96PN6 1610 aa17.87■□□□□ 0.45
BRCA1-222ENST00000493919 FHOD3Q2V2M9 1422 aa17.86■□□□□ 0.45
BRCA1-222ENST00000493919 PLB1Q6P1J6 1458 aa17.82■□□□□ 0.44
BRCA1-222ENST00000493919 UACAQ9BZF9 1416 aa17.81■□□□□ 0.44
BRCA1-222ENST00000493919 ABCC2Q92887 1545 aa17.81■□□□□ 0.44
BRCA1-222ENST00000493919 ARHGAP35Q9NRY4 1499 aa17.81■□□□□ 0.44
BRCA1-222ENST00000493919 LOC105371045A0A1W2PR82 267 aa17.8■□□□□ 0.44
BRCA1-222ENST00000493919 NCBP3Q53F19 620 aaKnown RBP17.79■□□□□ 0.44
BRCA1-222ENST00000493919 ABCA8O94911 1581 aa17.77■□□□□ 0.44
BRCA1-222ENST00000493919 UHRF1BP1LA0JNW5 1464 aa17.77■□□□□ 0.43
BRCA1-222ENST00000493919 NPM1P06748 294 aaKnown RBP eCLIP17.76■□□□□ 0.43
BRCA1-222ENST00000493919 CENPBP07199 599 aaPredicted RBP17.76■□□□□ 0.43
BRCA1-222ENST00000493919 CLIP1P30622 1438 aa17.76■□□□□ 0.43
BRCA1-222ENST00000493919 RAPGEF6Q8TEU7 1601 aa17.75■□□□□ 0.43
BRCA1-222ENST00000493919 CEP162Q5TB80 1403 aa17.73■□□□□ 0.43
BRCA1-222ENST00000493919 ZCCHC11Q5TAX3 1644 aaKnown RBP17.72■□□□□ 0.43
BRCA1-222ENST00000493919 ARID3CA6NKF2 412 aa17.72■□□□□ 0.43
BRCA1-222ENST00000493919 MAPKBP1O60336 1514 aa17.7■□□□□ 0.42
BRCA1-222ENST00000493919 KDM5BQ9UGL1 1544 aa17.7■□□□□ 0.42
BRCA1-222ENST00000493919 TRHP20396 242 aaPredicted RBP17.7■□□□□ 0.42
BRCA1-222ENST00000493919 FMN1Q68DA7 1419 aa17.7■□□□□ 0.42
BRCA1-222ENST00000493919 NUP153P49790 1475 aaKnown RBP17.66■□□□□ 0.42
BRCA1-222ENST00000493919 ATP1B4Q9UN42 357 aaPredicted RBP17.64■□□□□ 0.42
BRCA1-222ENST00000493919 HECW1Q76N89 1606 aa17.64■□□□□ 0.41
BRCA1-222ENST00000493919 ASXL2Q76L83 1435 aa17.64■□□□□ 0.41
BRCA1-222ENST00000493919 PCF11O94913 1555 aaKnown RBP17.64■□□□□ 0.41
BRCA1-222ENST00000493919 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.62■□□□□ 0.41
BRCA1-222ENST00000493919 HNRNPUL2Q1KMD3 747 aaKnown RBP17.62■□□□□ 0.41
BRCA1-222ENST00000493919 ATP10BO94823 1461 aa17.61■□□□□ 0.41
BRCA1-222ENST00000493919 DIP2BQ9P265 1576 aa17.61■□□□□ 0.41
BRCA1-222ENST00000493919 KIF13AQ9H1H9 1805 aa17.6■□□□□ 0.41
BRCA1-222ENST00000493919 CDK13Q14004 1512 aaKnown RBP17.59■□□□□ 0.41
BRCA1-222ENST00000493919 ABCC10Q5T3U5 1492 aa17.59■□□□□ 0.41
BRCA1-222ENST00000493919 WDR7Q9Y4E6 1490 aa17.58■□□□□ 0.41
BRCA1-222ENST00000493919 FYCO1Q9BQS8 1478 aa17.57■□□□□ 0.4
BRCA1-222ENST00000493919 CASKIN1Q8WXD9 1431 aa17.56■□□□□ 0.4
BRCA1-222ENST00000493919 FAM69CQ0P6D2 419 aa17.56■□□□□ 0.4
BRCA1-222ENST00000493919 LRRIQ1Q96JM4 1722 aa17.56■□□□□ 0.4
BRCA1-222ENST00000493919 EPRSP07814 1512 aaKnown RBP17.55■□□□□ 0.4
BRCA1-222ENST00000493919 KCNH8Q96L42 1107 aa17.51■□□□□ 0.39
BRCA1-222ENST00000493919 CCDC18Q5T9S5 1454 aa17.51■□□□□ 0.39
BRCA1-222ENST00000493919 ARXQ96QS3 562 aa17.51■□□□□ 0.39
BRCA1-222ENST00000493919 TSPOAP1O95153 1857 aa17.49■□□□□ 0.39
BRCA1-222ENST00000493919 VPS8Q8N3P4 1428 aa17.49■□□□□ 0.39
BRCA1-222ENST00000493919 GLI2P10070 1586 aa17.48■□□□□ 0.39
BRCA1-222ENST00000493919 PLEKHD1A6NEE1 506 aa17.47■□□□□ 0.39
BRCA1-222ENST00000493919 MAP3K4Q9Y6R4 1608 aa17.45■□□□□ 0.38
BRCA1-222ENST00000493919 CFAP43Q8NDM7 1665 aa17.43■□□□□ 0.38
BRCA1-222ENST00000493919 UBE2Q2Q8WVN8 375 aa17.43■□□□□ 0.38
BRCA1-222ENST00000493919 CDK11AQ9UQ88 783 aaPredicted RBP17.43■□□□□ 0.38
BRCA1-222ENST00000493919 ABCA9Q8IUA7 1624 aa17.41■□□□□ 0.38
BRCA1-222ENST00000493919 KIF14Q15058 1648 aa17.41■□□□□ 0.38
BRCA1-222ENST00000493919 TROQ12816 1431 aaPredicted RBP17.41■□□□□ 0.38
BRCA1-222ENST00000493919 MAGI3Q5TCQ9 1506 aa17.4■□□□□ 0.38
BRCA1-222ENST00000493919 PPRC1Q5VV67 1664 aaKnown RBP17.4■□□□□ 0.38
BRCA1-222ENST00000493919 TTC37Q6PGP7 1564 aa17.39■□□□□ 0.37
BRCA1-222ENST00000493919 CD109Q6YHK3 1445 aa17.39■□□□□ 0.37
BRCA1-222ENST00000493919 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.38■□□□□ 0.37
BRCA1-222ENST00000493919 TIAM1Q13009 1591 aa17.37■□□□□ 0.37
BRCA1-222ENST00000493919 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
BRCA1-222ENST00000493919 TEX14Q8IWB6 1497 aa17.35■□□□□ 0.37
BRCA1-222ENST00000493919 EHBP1L1Q8N3D4 1523 aa17.34■□□□□ 0.37
BRCA1-222ENST00000493919 MYO5CQ9NQX4 1742 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms