RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 MRC2Q9UBG0 1479 aa20.73■□□□□ 0.91
VCP-207ENST00000493886 CTTNBP2Q8WZ74 1663 aa20.72■□□□□ 0.91
VCP-207ENST00000493886 FHAD1B1AJZ9 1412 aa20.69■□□□□ 0.9
VCP-207ENST00000493886 EFCAB5A4FU69 1503 aa20.68■□□□□ 0.9
VCP-207ENST00000493886 MAP3K1Q13233 1512 aa20.68■□□□□ 0.9
VCP-207ENST00000493886 P3H3Q8IVL6 736 aa20.67■□□□□ 0.9
VCP-207ENST00000493886 TIAM1Q13009 1591 aa20.66■□□□□ 0.9
VCP-207ENST00000493886 SCAF1Q9H7N4 1312 aaKnown RBP20.65■□□□□ 0.9
VCP-207ENST00000493886 FHOD3Q2V2M9 1422 aa20.64■□□□□ 0.9
VCP-207ENST00000493886 RRBP1Q9P2E9 1410 aaKnown RBP20.64■□□□□ 0.89
VCP-207ENST00000493886 PCF11O94913 1555 aaKnown RBP20.62■□□□□ 0.89
VCP-207ENST00000493886 PBRM1Q86U86 1689 aa20.6■□□□□ 0.89
VCP-207ENST00000493886 WDR62O43379 1518 aa20.58■□□□□ 0.89
VCP-207ENST00000493886 AQRO60306 1485 aaKnown RBP eCLIP20.58■□□□□ 0.897e-7■■■■□ 23.7
VCP-207ENST00000493886 LRRC9Q6ZRR7 1453 aa20.57■□□□□ 0.88
VCP-207ENST00000493886 CFAP43Q8NDM7 1665 aa20.56■□□□□ 0.88
VCP-207ENST00000493886 FYCO1Q9BQS8 1478 aa20.56■□□□□ 0.88
VCP-207ENST00000493886 CCNB3Q8WWL7 1395 aa20.56■□□□□ 0.88
VCP-207ENST00000493886 CASKIN1Q8WXD9 1431 aa20.55■□□□□ 0.88
VCP-207ENST00000493886 IFT140Q96RY7 1462 aa20.54■□□□□ 0.88
VCP-207ENST00000493886 SAMD9Q5K651 1589 aa20.53■□□□□ 0.88
VCP-207ENST00000493886 FMN1Q68DA7 1419 aa20.53■□□□□ 0.88
VCP-207ENST00000493886 ATP1B4Q9UN42 357 aaPredicted RBP20.53■□□□□ 0.88
VCP-207ENST00000493886 GRIN2BQ13224 1484 aa20.52■□□□□ 0.87
VCP-207ENST00000493886 ADAMTS12P58397 1594 aa20.51■□□□□ 0.87
VCP-207ENST00000493886 ERCC6Q03468 1493 aa20.5■□□□□ 0.87
VCP-207ENST00000493886 ZNF608Q9ULD9 1512 aaPredicted RBP20.49■□□□□ 0.87
VCP-207ENST00000493886 DIEXFQ68CQ4 756 aaKnown RBP20.47■□□□□ 0.87
VCP-207ENST00000493886 SNAPC4Q5SXM2 1469 aa20.47■□□□□ 0.87
VCP-207ENST00000493886 PHLDB1Q86UU1 1377 aa20.45■□□□□ 0.86
VCP-207ENST00000493886 THOC2Q8NI27 1593 aaKnown RBP20.42■□□□□ 0.86
VCP-207ENST00000493886 IQGAP2Q13576 1575 aa20.41■□□□□ 0.86
VCP-207ENST00000493886 ITGAEP38570 1179 aa20.39■□□□□ 0.85
VCP-207ENST00000493886 NEUROD1Q13562 356 aa20.39■□□□□ 0.85
VCP-207ENST00000493886 DHX57Q6P158 1386 aaKnown RBP20.38■□□□□ 0.85
VCP-207ENST00000493886 EIF4G3O43432 1585 aaKnown RBP20.38■□□□□ 0.85
VCP-207ENST00000493886 BCL11AQ9H165 835 aa20.37■□□□□ 0.85
VCP-207ENST00000493886 CLSPNQ9HAW4 1339 aa20.36■□□□□ 0.85
VCP-207ENST00000493886 LRRIQ1Q96JM4 1722 aa20.35■□□□□ 0.85
VCP-207ENST00000493886 ACIN1Q9UKV3 1341 aaKnown RBP20.34■□□□□ 0.85
VCP-207ENST00000493886 MTUS2Q5JR59 1369 aa20.32■□□□□ 0.84
VCP-207ENST00000493886 FAM50AQ14320 339 aaKnown RBP20.32■□□□□ 0.84
VCP-207ENST00000493886 UGGT2Q9NYU1 1516 aa20.3■□□□□ 0.84
VCP-207ENST00000493886 GRIN2AQ12879 1464 aa20.29■□□□□ 0.84
VCP-207ENST00000493886 KIAA0586Q9BVV6 1533 aa20.28■□□□□ 0.84
VCP-207ENST00000493886 RAB3GAP2Q9H2M9 1393 aa20.27■□□□□ 0.83
VCP-207ENST00000493886 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.27■□□□□ 0.831e-6■■■□□ 16.9
VCP-207ENST00000493886 MAGI1Q96QZ7 1491 aaPredicted RBP20.26■□□□□ 0.83
VCP-207ENST00000493886 CCDC18Q5T9S5 1454 aa20.25■□□□□ 0.83
VCP-207ENST00000493886 HECW1Q76N89 1606 aa20.25■□□□□ 0.83
VCP-207ENST00000493886 ZNF316A6NFI3 1004 aaPredicted RBP20.24■□□□□ 0.83
VCP-207ENST00000493886 FGD6Q6ZV73 1430 aa20.24■□□□□ 0.83
VCP-207ENST00000493886 SETD5Q9C0A6 1442 aa20.24■□□□□ 0.83
VCP-207ENST00000493886 EHBP1L1Q8N3D4 1523 aa20.24■□□□□ 0.83
VCP-207ENST00000493886 NCOA2Q15596 1464 aa20.22■□□□□ 0.83
VCP-207ENST00000493886 SUPT6HQ7KZ85 1726 aaKnown RBP20.21■□□□□ 0.83
VCP-207ENST00000493886 YTHDC1Q96MU7 727 aaKnown RBP20.21■□□□□ 0.83
VCP-207ENST00000493886 GTF3C3Q9Y5Q9 886 aa20.21■□□□□ 0.83
VCP-207ENST00000493886 SYNJ2O15056 1496 aa20.2■□□□□ 0.82
VCP-207ENST00000493886 KIAA0556O60303 1618 aa20.2■□□□□ 0.82
VCP-207ENST00000493886 DISP1Q96F81 1524 aa20.19■□□□□ 0.82
VCP-207ENST00000493886 CENPBP07199 599 aaPredicted RBP20.19■□□□□ 0.82
VCP-207ENST00000493886 CHMP7Q8WUX9 453 aaPredicted RBP20.19■□□□□ 0.82
VCP-207ENST00000493886 EPRSP07814 1512 aaKnown RBP20.19■□□□□ 0.82
VCP-207ENST00000493886 MAGI3Q5TCQ9 1506 aa20.19■□□□□ 0.82
VCP-207ENST00000493886 MYOM3Q5VTT5 1437 aa20.18■□□□□ 0.82
VCP-207ENST00000493886 CEP170Q5SW79 1584 aa20.15■□□□□ 0.82
VCP-207ENST00000493886 ARHGEF11O15085 1522 aa20.15■□□□□ 0.82
VCP-207ENST00000493886 ERICH6Q7L0X2 663 aa20.14■□□□□ 0.81
VCP-207ENST00000493886 CDK13Q14004 1512 aaKnown RBP20.14■□□□□ 0.81
VCP-207ENST00000493886 FBLN2P98095 1184 aa20.13■□□□□ 0.81
VCP-207ENST00000493886 MAPKBP1O60336 1514 aa20.11■□□□□ 0.81
VCP-207ENST00000493886 NUP160Q12769 1436 aa20.1■□□□□ 0.81
VCP-207ENST00000493886 PTPN23Q9H3S7 1636 aa20.08■□□□□ 0.8
VCP-207ENST00000493886 ARID3CA6NKF2 412 aa20.08■□□□□ 0.8
VCP-207ENST00000493886 PTPRKQ15262 1439 aa20.07■□□□□ 0.8
VCP-207ENST00000493886 RAPGEF6Q8TEU7 1601 aa20.07■□□□□ 0.8
VCP-207ENST00000493886 NUP153P49790 1475 aaKnown RBP20.05■□□□□ 0.8
VCP-207ENST00000493886 MIER1Q8N108 512 aa20.05■□□□□ 0.8
VCP-207ENST00000493886 SLC24A1O60721 1099 aa20.04■□□□□ 0.8
VCP-207ENST00000493886 TCOF1Q13428 1488 aaKnown RBP20.03■□□□□ 0.8
VCP-207ENST00000493886 JPH4Q96JJ6 628 aa20.03■□□□□ 0.8
VCP-207ENST00000493886 HFM1A2PYH4 1435 aa20.02■□□□□ 0.8
VCP-207ENST00000493886 CARMIL2Q6F5E8 1435 aa20.01■□□□□ 0.79
VCP-207ENST00000493886 MIA2Q96PC5 1412 aa20■□□□□ 0.79
VCP-207ENST00000493886 NAIPQ13075 1403 aa19.97■□□□□ 0.79
VCP-207ENST00000493886 CDK11AQ9UQ88 783 aaPredicted RBP19.96■□□□□ 0.79
VCP-207ENST00000493886 PLB1Q6P1J6 1458 aa19.96■□□□□ 0.79
VCP-207ENST00000493886 SIN3AQ96ST3 1273 aa19.93■□□□□ 0.78
VCP-207ENST00000493886 UACAQ9BZF9 1416 aa19.92■□□□□ 0.78
VCP-207ENST00000493886 TROQ12816 1431 aaPredicted RBP19.9■□□□□ 0.78
VCP-207ENST00000493886 CHIC2Q9UKJ5 165 aa19.89■□□□□ 0.77
VCP-207ENST00000493886 PRG4Q92954 1404 aaPredicted RBP19.88■□□□□ 0.77
VCP-207ENST00000493886 AKNAQ7Z591 1439 aa19.88■□□□□ 0.77
VCP-207ENST00000493886 RRP7BPQ9NSQ0 103 aa19.88■□□□□ 0.77
VCP-207ENST00000493886 GCC2Q8IWJ2 1684 aa19.87■□□□□ 0.77
VCP-207ENST00000493886 TIMELESSQ9UNS1 1208 aa19.86■□□□□ 0.77
VCP-207ENST00000493886 ABCA8O94911 1581 aa19.86■□□□□ 0.77
VCP-207ENST00000493886 CHD1O14646 1710 aa19.85■□□□□ 0.77
VCP-207ENST00000493886 ADCY10Q96PN6 1610 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms