RNA–Protein interactions for RNA: ENST00000493648.1

TOP3A-207, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 503 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-207ENST00000493648 CEP170Q5SW79 1584 aa11.79□□□□□ -0.52
TOP3A-207ENST00000493648 CUL7Q14999 1698 aa11.79□□□□□ -0.52
TOP3A-207ENST00000493648 JPH4Q96JJ6 628 aa11.77□□□□□ -0.53
TOP3A-207ENST00000493648 ARAP1Q96P48 1450 aa11.76□□□□□ -0.53
TOP3A-207ENST00000493648 RUSC2Q8N2Y8 1516 aa11.74□□□□□ -0.53
TOP3A-207ENST00000493648 SHROOM2Q13796 1616 aa11.72□□□□□ -0.53
TOP3A-207ENST00000493648 KIAA0586Q9BVV6 1533 aa11.72□□□□□ -0.53
TOP3A-207ENST00000493648 PRG4Q92954 1404 aaPredicted RBP11.71□□□□□ -0.53
TOP3A-207ENST00000493648 RAPGEF2Q9Y4G8 1499 aa11.7□□□□□ -0.54
TOP3A-207ENST00000493648 ERCC6L2Q5T890 1561 aa11.69□□□□□ -0.54
TOP3A-207ENST00000493648 CSRNP3Q8WYN3 585 aa11.67□□□□□ -0.54
TOP3A-207ENST00000493648 TRHP20396 242 aaPredicted RBP11.65□□□□□ -0.54
TOP3A-207ENST00000493648 MSH5O43196 834 aa11.64□□□□□ -0.55
TOP3A-207ENST00000493648 EEA1Q15075 1411 aa11.63□□□□□ -0.55
TOP3A-207ENST00000493648 IQGAP2Q13576 1575 aa11.62□□□□□ -0.55
TOP3A-207ENST00000493648 CARMIL2Q6F5E8 1435 aa11.62□□□□□ -0.55
TOP3A-207ENST00000493648 FAM9AQ8IZU1 332 aaPredicted RBP11.62□□□□□ -0.55
TOP3A-207ENST00000493648 PRXQ9BXM0 1461 aa11.62□□□□□ -0.55
TOP3A-207ENST00000493648 NPM1P06748 294 aaKnown RBP eCLIP11.6□□□□□ -0.55
TOP3A-207ENST00000493648 PTPRGP23470 1445 aa11.59□□□□□ -0.55
TOP3A-207ENST00000493648 TTBK1Q5TCY1 1321 aaPredicted RBP11.59□□□□□ -0.55
TOP3A-207ENST00000493648 TNIKQ9UKE5 1360 aa11.57□□□□□ -0.56
TOP3A-207ENST00000493648 UGGT2Q9NYU1 1516 aa11.56□□□□□ -0.56
TOP3A-207ENST00000493648 CTTNBP2Q8WZ74 1663 aa11.56□□□□□ -0.56
TOP3A-207ENST00000493648 DISP1Q96F81 1524 aa11.54□□□□□ -0.56
TOP3A-207ENST00000493648 GOLGA3Q08378 1498 aa11.53□□□□□ -0.56
TOP3A-207ENST00000493648 KIAA0556O60303 1618 aa11.5□□□□□ -0.57
TOP3A-207ENST00000493648 ADCY10Q96PN6 1610 aa11.5□□□□□ -0.57
TOP3A-207ENST00000493648 UACAQ9BZF9 1416 aa11.49□□□□□ -0.57
TOP3A-207ENST00000493648 UBTFP17480 764 aaKnown RBP11.48□□□□□ -0.57
TOP3A-207ENST00000493648 KIF21BO75037 1637 aa11.48□□□□□ -0.57
TOP3A-207ENST00000493648 UHRF1BP1LA0JNW5 1464 aa11.47□□□□□ -0.57
TOP3A-207ENST00000493648 RANGAP1P46060 587 aaPredicted RBP11.47□□□□□ -0.57
TOP3A-207ENST00000493648 P3H3Q8IVL6 736 aa11.47□□□□□ -0.57
TOP3A-207ENST00000493648 EHMT2Q96KQ7 1210 aa11.46□□□□□ -0.57
TOP3A-207ENST00000493648 FAM69CQ0P6D2 419 aa11.45□□□□□ -0.58
TOP3A-207ENST00000493648 MAPKBP1O60336 1514 aa11.45□□□□□ -0.58
TOP3A-207ENST00000493648 ABCC2Q92887 1545 aa11.45□□□□□ -0.58
TOP3A-207ENST00000493648 ABCC10Q5T3U5 1492 aa11.42□□□□□ -0.58
TOP3A-207ENST00000493648 PLB1Q6P1J6 1458 aa11.41□□□□□ -0.58
TOP3A-207ENST00000493648 KIF13AQ9H1H9 1805 aa11.41□□□□□ -0.58
TOP3A-207ENST00000493648 KDM5BQ9UGL1 1544 aa11.4□□□□□ -0.58
TOP3A-207ENST00000493648 PIAS4Q8N2W9 510 aaPredicted RBP11.4□□□□□ -0.58
TOP3A-207ENST00000493648 ASXL2Q76L83 1435 aa11.4□□□□□ -0.58
TOP3A-207ENST00000493648 SAMD9Q5K651 1589 aa11.4□□□□□ -0.58
TOP3A-207ENST00000493648 ABCA8O94911 1581 aa11.38□□□□□ -0.59
TOP3A-207ENST00000493648 DIP2BQ9P265 1576 aa11.37□□□□□ -0.59
TOP3A-207ENST00000493648 ZCCHC11Q5TAX3 1644 aaKnown RBP11.37□□□□□ -0.59
TOP3A-207ENST00000493648 EFCAB5A4FU69 1503 aa11.36□□□□□ -0.59
TOP3A-207ENST00000493648 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.35□□□□□ -0.59
TOP3A-207ENST00000493648 HNRNPUL2Q1KMD3 747 aaKnown RBP11.35□□□□□ -0.59
TOP3A-207ENST00000493648 FHOD3Q2V2M9 1422 aa11.35□□□□□ -0.59
TOP3A-207ENST00000493648 ARID3CA6NKF2 412 aa11.34□□□□□ -0.59
TOP3A-207ENST00000493648 KCNH8Q96L42 1107 aa11.34□□□□□ -0.59
TOP3A-207ENST00000493648 GLI2P10070 1586 aa11.33□□□□□ -0.6
TOP3A-207ENST00000493648 WDR7Q9Y4E6 1490 aa11.32□□□□□ -0.6
TOP3A-207ENST00000493648 TSPOAP1O95153 1857 aa11.32□□□□□ -0.6
TOP3A-207ENST00000493648 RAPGEF6Q8TEU7 1601 aa11.32□□□□□ -0.6
TOP3A-207ENST00000493648 ATP10BO94823 1461 aa11.32□□□□□ -0.6
TOP3A-207ENST00000493648 EPRSP07814 1512 aaKnown RBP11.31□□□□□ -0.6
TOP3A-207ENST00000493648 ATP1B4Q9UN42 357 aaPredicted RBP11.3□□□□□ -0.6
TOP3A-207ENST00000493648 FMN1Q68DA7 1419 aa11.29□□□□□ -0.6
TOP3A-207ENST00000493648 PLEKHD1A6NEE1 506 aa11.29□□□□□ -0.6
TOP3A-207ENST00000493648 ARHGAP35Q9NRY4 1499 aa11.29□□□□□ -0.6
TOP3A-207ENST00000493648 PLPPR3Q6T4P5 718 aa11.28□□□□□ -0.6
TOP3A-207ENST00000493648 NUP153P49790 1475 aaKnown RBP11.27□□□□□ -0.6
TOP3A-207ENST00000493648 MAP3K4Q9Y6R4 1608 aa11.26□□□□□ -0.61
TOP3A-207ENST00000493648 CD109Q6YHK3 1445 aa11.26□□□□□ -0.61
TOP3A-207ENST00000493648 TEX14Q8IWB6 1497 aa11.25□□□□□ -0.61
TOP3A-207ENST00000493648 PPP6R1Q9UPN7 881 aa11.24□□□□□ -0.61
TOP3A-207ENST00000493648 CDK11AQ9UQ88 783 aaPredicted RBP11.24□□□□□ -0.61
TOP3A-207ENST00000493648 CFAP43Q8NDM7 1665 aa11.24□□□□□ -0.61
TOP3A-207ENST00000493648 CLIP1P30622 1438 aa11.23□□□□□ -0.61
TOP3A-207ENST00000493648 KDM6BO15054 1643 aa11.23□□□□□ -0.61
TOP3A-207ENST00000493648 PPRC1Q5VV67 1664 aaKnown RBP11.23□□□□□ -0.61
TOP3A-207ENST00000493648 HECW1Q76N89 1606 aa11.21□□□□□ -0.61
TOP3A-207ENST00000493648 MAGI3Q5TCQ9 1506 aa11.21□□□□□ -0.61
TOP3A-207ENST00000493648 LOC105371045A0A1W2PR82 267 aa11.2□□□□□ -0.62
TOP3A-207ENST00000493648 CDK13Q14004 1512 aaKnown RBP11.19□□□□□ -0.62
TOP3A-207ENST00000493648 CASKIN1Q8WXD9 1431 aa11.18□□□□□ -0.62
TOP3A-207ENST00000493648 ABCA9Q8IUA7 1624 aa11.18□□□□□ -0.62
TOP3A-207ENST00000493648 PHLDB1Q86UU1 1377 aa11.17□□□□□ -0.62
TOP3A-207ENST00000493648 ADRA2BP18089 450 aa11.16□□□□□ -0.62
TOP3A-207ENST00000493648 COL17A1Q9UMD9 1497 aaPredicted RBP11.15□□□□□ -0.62
TOP3A-207ENST00000493648 CEP162Q5TB80 1403 aa11.15□□□□□ -0.62
TOP3A-207ENST00000493648 CCDC18Q5T9S5 1454 aa11.14□□□□□ -0.63
TOP3A-207ENST00000493648 FYCO1Q9BQS8 1478 aa11.13□□□□□ -0.63
TOP3A-207ENST00000493648 PCF11O94913 1555 aaKnown RBP11.13□□□□□ -0.63
TOP3A-207ENST00000493648 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.13□□□□□ -0.63
TOP3A-207ENST00000493648 NEO1Q92859 1461 aa11.12□□□□□ -0.63
TOP3A-207ENST00000493648 TROQ12816 1431 aaPredicted RBP11.12□□□□□ -0.63
TOP3A-207ENST00000493648 ARAP3Q8WWN8 1544 aa11.12□□□□□ -0.63
TOP3A-207ENST00000493648 LRRIQ1Q96JM4 1722 aa11.12□□□□□ -0.63
TOP3A-207ENST00000493648 PLCH2O75038 1416 aa11.09□□□□□ -0.63
TOP3A-207ENST00000493648 TTC37Q6PGP7 1564 aa11.09□□□□□ -0.63
TOP3A-207ENST00000493648 EFCAB2Q5VUJ9 269 aa11.09□□□□□ -0.63
TOP3A-207ENST00000493648 KIF14Q15058 1648 aa11.09□□□□□ -0.63
TOP3A-207ENST00000493648 AKNAQ7Z591 1439 aa11.09□□□□□ -0.63
TOP3A-207ENST00000493648 FANCAO15360 1455 aa11.08□□□□□ -0.64
TOP3A-207ENST00000493648 RAPGEF3O95398 923 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms