RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 MAP3K1Q13233 1512 aa31.95■■■□□ 2.71
CCDC88B-208ENST00000492980 TIAM1Q13009 1591 aa31.93■■■□□ 2.7
CCDC88B-208ENST00000492980 FHAD1B1AJZ9 1412 aa31.92■■■□□ 2.7
CCDC88B-208ENST00000492980 PBRM1Q86U86 1689 aa31.9■■■□□ 2.7
CCDC88B-208ENST00000492980 PCF11O94913 1555 aaKnown RBP31.88■■■□□ 2.69
CCDC88B-208ENST00000492980 RRBP1Q9P2E9 1410 aaKnown RBP31.86■■■□□ 2.69
CCDC88B-208ENST00000492980 WDR62O43379 1518 aa31.86■■■□□ 2.69
CCDC88B-208ENST00000492980 FHOD3Q2V2M9 1422 aa31.86■■■□□ 2.69
CCDC88B-208ENST00000492980 P3H3Q8IVL6 736 aa31.83■■■□□ 2.69
CCDC88B-208ENST00000492980 CFAP43Q8NDM7 1665 aa31.83■■■□□ 2.69
CCDC88B-208ENST00000492980 SAMD9Q5K651 1589 aa31.78■■■□□ 2.68
CCDC88B-208ENST00000492980 AQRO60306 1485 aaKnown RBP eCLIP31.77■■■□□ 2.68
CCDC88B-208ENST00000492980 LRRC9Q6ZRR7 1453 aa31.77■■■□□ 2.68
CCDC88B-208ENST00000492980 FYCO1Q9BQS8 1478 aa31.76■■■□□ 2.68
CCDC88B-208ENST00000492980 IFT140Q96RY7 1462 aa31.76■■■□□ 2.67
CCDC88B-208ENST00000492980 ADAMTS12P58397 1594 aa31.75■■■□□ 2.67
CCDC88B-208ENST00000492980 CASKIN1Q8WXD9 1431 aa31.73■■■□□ 2.67
CCDC88B-208ENST00000492980 CCNB3Q8WWL7 1395 aa31.7■■■□□ 2.67
CCDC88B-208ENST00000492980 GRIN2BQ13224 1484 aa31.7■■■□□ 2.67
CCDC88B-208ENST00000492980 FMN1Q68DA7 1419 aa31.68■■■□□ 2.66
CCDC88B-208ENST00000492980 ZNF608Q9ULD9 1512 aaPredicted RBP31.66■■■□□ 2.66
CCDC88B-208ENST00000492980 ERCC6Q03468 1493 aa31.65■■■□□ 2.66
CCDC88B-208ENST00000492980 SNAPC4Q5SXM2 1469 aa31.64■■■□□ 2.66
CCDC88B-208ENST00000492980 THOC2Q8NI27 1593 aaKnown RBP31.63■■■□□ 2.65
CCDC88B-208ENST00000492980 ATP1B4Q9UN42 357 aaPredicted RBP31.57■■■□□ 2.64
CCDC88B-208ENST00000492980 IQGAP2Q13576 1575 aa31.55■■■□□ 2.64
CCDC88B-208ENST00000492980 PHLDB1Q86UU1 1377 aa31.55■■■□□ 2.64
CCDC88B-208ENST00000492980 EIF4G3O43432 1585 aaKnown RBP31.54■■■□□ 2.64
CCDC88B-208ENST00000492980 LRRIQ1Q96JM4 1722 aa31.5■■■□□ 2.63
CCDC88B-208ENST00000492980 DHX57Q6P158 1386 aaKnown RBP31.43■■■□□ 2.62
CCDC88B-208ENST00000492980 UGGT2Q9NYU1 1516 aa31.39■■■□□ 2.62
CCDC88B-208ENST00000492980 ITGAEP38570 1179 aa31.37■■■□□ 2.61
CCDC88B-208ENST00000492980 CLSPNQ9HAW4 1339 aa31.37■■■□□ 2.61
CCDC88B-208ENST00000492980 GRIN2AQ12879 1464 aa31.36■■■□□ 2.61
CCDC88B-208ENST00000492980 KIAA0586Q9BVV6 1533 aa31.33■■■□□ 2.61
CCDC88B-208ENST00000492980 MAGI1Q96QZ7 1491 aaPredicted RBP31.33■■■□□ 2.61
CCDC88B-208ENST00000492980 MTUS2Q5JR59 1369 aa31.32■■■□□ 2.6
CCDC88B-208ENST00000492980 HECW1Q76N89 1606 aa31.31■■■□□ 2.6
CCDC88B-208ENST00000492980 CCDC18Q5T9S5 1454 aa31.28■■■□□ 2.6
CCDC88B-208ENST00000492980 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.28■■■□□ 2.68e-6■■□□□ 11.9
CCDC88B-208ENST00000492980 FAM50AQ14320 339 aaKnown RBP31.28■■■□□ 2.6
CCDC88B-208ENST00000492980 EHBP1L1Q8N3D4 1523 aa31.28■■■□□ 2.6
CCDC88B-208ENST00000492980 RAB3GAP2Q9H2M9 1393 aa31.25■■■□□ 2.59
CCDC88B-208ENST00000492980 FGD6Q6ZV73 1430 aa31.24■■■□□ 2.59
CCDC88B-208ENST00000492980 SUPT6HQ7KZ85 1726 aaKnown RBP31.24■■■□□ 2.59
CCDC88B-208ENST00000492980 KIAA0556O60303 1618 aa31.24■■■□□ 2.59
CCDC88B-208ENST00000492980 SYNJ2O15056 1496 aa31.23■■■□□ 2.59
CCDC88B-208ENST00000492980 NCOA2Q15596 1464 aa31.22■■■□□ 2.59
CCDC88B-208ENST00000492980 DISP1Q96F81 1524 aa31.22■■■□□ 2.59
CCDC88B-208ENST00000492980 SETD5Q9C0A6 1442 aa31.21■■■□□ 2.59
CCDC88B-208ENST00000492980 MAGI3Q5TCQ9 1506 aa31.21■■■□□ 2.59
CCDC88B-208ENST00000492980 CEP170Q5SW79 1584 aa31.18■■■□□ 2.58
CCDC88B-208ENST00000492980 EPRSP07814 1512 aaKnown RBP31.18■■■□□ 2.58
CCDC88B-208ENST00000492980 ARHGEF11O15085 1522 aa31.16■■■□□ 2.58
CCDC88B-208ENST00000492980 ZNF316A6NFI3 1004 aaPredicted RBP31.15■■■□□ 2.58
CCDC88B-208ENST00000492980 MYOM3Q5VTT5 1437 aa31.14■■■□□ 2.58
CCDC88B-208ENST00000492980 CHMP7Q8WUX9 453 aaPredicted RBP31.12■■■□□ 2.57
CCDC88B-208ENST00000492980 CDK13Q14004 1512 aaKnown RBP31.1■■■□□ 2.57
CCDC88B-208ENST00000492980 DIEXFQ68CQ4 756 aaKnown RBP31.09■■■□□ 2.57
CCDC88B-208ENST00000492980 NUP160Q12769 1436 aa31.07■■■□□ 2.56
CCDC88B-208ENST00000492980 MAPKBP1O60336 1514 aa31.06■■■□□ 2.56
CCDC88B-208ENST00000492980 RAPGEF6Q8TEU7 1601 aa31.03■■■□□ 2.56
CCDC88B-208ENST00000492980 PTPN23Q9H3S7 1636 aa31.03■■■□□ 2.56
CCDC88B-208ENST00000492980 FBLN2P98095 1184 aa31■■■□□ 2.55
CCDC88B-208ENST00000492980 NUP153P49790 1475 aaKnown RBP30.98■■■□□ 2.55
CCDC88B-208ENST00000492980 PTPRKQ15262 1439 aa30.98■■■□□ 2.55
CCDC88B-208ENST00000492980 TCOF1Q13428 1488 aaKnown RBP30.95■■■□□ 2.55
CCDC88B-208ENST00000492980 ARID3CA6NKF2 412 aa30.92■■■□□ 2.54
CCDC88B-208ENST00000492980 HFM1A2PYH4 1435 aa30.91■■■□□ 2.54
CCDC88B-208ENST00000492980 CARMIL2Q6F5E8 1435 aa30.88■■■□□ 2.53
CCDC88B-208ENST00000492980 JPH4Q96JJ6 628 aa30.87■■■□□ 2.53
CCDC88B-208ENST00000492980 MIA2Q96PC5 1412 aa30.87■■■□□ 2.53
CCDC88B-208ENST00000492980 PLB1Q6P1J6 1458 aa30.83■■■□□ 2.53
CCDC88B-208ENST00000492980 NAIPQ13075 1403 aa30.82■■■□□ 2.52
CCDC88B-208ENST00000492980 CDK11AQ9UQ88 783 aaPredicted RBP30.75■■■□□ 2.51
CCDC88B-208ENST00000492980 GCC2Q8IWJ2 1684 aa30.75■■■□□ 2.51
CCDC88B-208ENST00000492980 CHD1O14646 1710 aa30.74■■■□□ 2.51
CCDC88B-208ENST00000492980 UACAQ9BZF9 1416 aa30.73■■■□□ 2.51
CCDC88B-208ENST00000492980 TROQ12816 1431 aaPredicted RBP30.72■■■□□ 2.51
CCDC88B-208ENST00000492980 ABCA8O94911 1581 aa30.72■■■□□ 2.51
CCDC88B-208ENST00000492980 AKNAQ7Z591 1439 aa30.71■■■□□ 2.51
CCDC88B-208ENST00000492980 PRG4Q92954 1404 aaPredicted RBP30.69■■■□□ 2.5
CCDC88B-208ENST00000492980 ADCY10Q96PN6 1610 aa30.69■■■□□ 2.5
CCDC88B-208ENST00000492980 SIN3AQ96ST3 1273 aa30.68■■■□□ 2.5
CCDC88B-208ENST00000492980 DNMT1P26358 1616 aaKnown RBP30.62■■■□□ 2.49
CCDC88B-208ENST00000492980 KIF14Q15058 1648 aa30.62■■■□□ 2.49
CCDC88B-208ENST00000492980 ITSN2Q9NZM3 1697 aa30.62■■■□□ 2.49
CCDC88B-208ENST00000492980 CHIC2Q9UKJ5 165 aa30.61■■■□□ 2.49
CCDC88B-208ENST00000492980 NEUROD1Q13562 356 aa30.61■■■□□ 2.49
CCDC88B-208ENST00000492980 RRP7BPQ9NSQ0 103 aa30.61■■■□□ 2.49
CCDC88B-208ENST00000492980 DAPK1P53355 1430 aa30.6■■■□□ 2.49
CCDC88B-208ENST00000492980 TIMELESSQ9UNS1 1208 aa30.6■■■□□ 2.49
CCDC88B-208ENST00000492980 KDM6BO15054 1643 aa30.57■■■□□ 2.48
CCDC88B-208ENST00000492980 SHROOM2Q13796 1616 aa30.56■■■□□ 2.48
CCDC88B-208ENST00000492980 ABCC5O15440 1437 aa30.55■■■□□ 2.48
CCDC88B-208ENST00000492980 ATP10BO94823 1461 aa30.55■■■□□ 2.48
CCDC88B-208ENST00000492980 GPATCH8Q9UKJ3 1502 aaKnown RBP30.54■■■□□ 2.48
CCDC88B-208ENST00000492980 ZNF644Q9H582 1327 aaPredicted RBP30.53■■■□□ 2.48
CCDC88B-208ENST00000492980 ROCK1Q13464 1354 aa30.53■■■□□ 2.48
CCDC88B-208ENST00000492980 MIER1Q8N108 512 aa30.51■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms