RNA–Protein interactions for RNA: ENST00000492511.1

PDLIM1-204, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 453 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-204ENST00000492511 CUL7Q14999 1698 aa12.2□□□□□ -0.46
PDLIM1-204ENST00000492511 CHIC1Q5VXU3 224 aa12.18□□□□□ -0.46
PDLIM1-204ENST00000492511 SHROOM2Q13796 1616 aa12.18□□□□□ -0.46
PDLIM1-204ENST00000492511 KIAA0586Q9BVV6 1533 aa12.17□□□□□ -0.46
PDLIM1-204ENST00000492511 PRG4Q92954 1404 aaPredicted RBP12.17□□□□□ -0.46
PDLIM1-204ENST00000492511 RAPGEF2Q9Y4G8 1499 aa12.15□□□□□ -0.46
PDLIM1-204ENST00000492511 PRXQ9BXM0 1461 aa12.13□□□□□ -0.47
PDLIM1-204ENST00000492511 CSRNP3Q8WYN3 585 aa12.12□□□□□ -0.47
PDLIM1-204ENST00000492511 AEBP2Q6ZN18 517 aaPredicted RBP12.11□□□□□ -0.47
PDLIM1-204ENST00000492511 FAM9AQ8IZU1 332 aaPredicted RBP12.06□□□□□ -0.48
PDLIM1-204ENST00000492511 IQGAP2Q13576 1575 aa12.05□□□□□ -0.48
PDLIM1-204ENST00000492511 EEA1Q15075 1411 aa12.05□□□□□ -0.48
PDLIM1-204ENST00000492511 DISP1Q96F81 1524 aa12.04□□□□□ -0.48
PDLIM1-204ENST00000492511 UGGT2Q9NYU1 1516 aa12.02□□□□□ -0.48
PDLIM1-204ENST00000492511 CARMIL2Q6F5E8 1435 aa12.02□□□□□ -0.49
PDLIM1-204ENST00000492511 TNIKQ9UKE5 1360 aa12.01□□□□□ -0.49
PDLIM1-204ENST00000492511 PTPRGP23470 1445 aa12.01□□□□□ -0.49
PDLIM1-204ENST00000492511 TTBK1Q5TCY1 1321 aaPredicted RBP11.99□□□□□ -0.49
PDLIM1-204ENST00000492511 ADCY10Q96PN6 1610 aa11.96□□□□□ -0.5
PDLIM1-204ENST00000492511 KIAA0556O60303 1618 aa11.95□□□□□ -0.5
PDLIM1-204ENST00000492511 CTTNBP2Q8WZ74 1663 aa11.94□□□□□ -0.5
PDLIM1-204ENST00000492511 UACAQ9BZF9 1416 aa11.93□□□□□ -0.5
PDLIM1-204ENST00000492511 KIF21BO75037 1637 aa11.93□□□□□ -0.5
PDLIM1-204ENST00000492511 NPM1P06748 294 aaKnown RBP eCLIP11.92□□□□□ -0.5
PDLIM1-204ENST00000492511 P3H3Q8IVL6 736 aa11.92□□□□□ -0.5
PDLIM1-204ENST00000492511 EHMT2Q96KQ7 1210 aa11.92□□□□□ -0.5
PDLIM1-204ENST00000492511 UHRF1BP1LA0JNW5 1464 aa11.91□□□□□ -0.5
PDLIM1-204ENST00000492511 GOLGA3Q08378 1498 aa11.91□□□□□ -0.5
PDLIM1-204ENST00000492511 ABCC2Q92887 1545 aa11.9□□□□□ -0.5
PDLIM1-204ENST00000492511 PLB1Q6P1J6 1458 aa11.89□□□□□ -0.51
PDLIM1-204ENST00000492511 MAPKBP1O60336 1514 aa11.88□□□□□ -0.51
PDLIM1-204ENST00000492511 RANGAP1P46060 587 aaPredicted RBP11.88□□□□□ -0.51
PDLIM1-204ENST00000492511 UBTFP17480 764 aaKnown RBP11.87□□□□□ -0.51
PDLIM1-204ENST00000492511 KDM5BQ9UGL1 1544 aa11.86□□□□□ -0.51
PDLIM1-204ENST00000492511 FAM69CQ0P6D2 419 aa11.86□□□□□ -0.51
PDLIM1-204ENST00000492511 ABCC10Q5T3U5 1492 aa11.86□□□□□ -0.51
PDLIM1-204ENST00000492511 SAMD9Q5K651 1589 aa11.86□□□□□ -0.51
PDLIM1-204ENST00000492511 ABCA8O94911 1581 aa11.84□□□□□ -0.51
PDLIM1-204ENST00000492511 KIF13AQ9H1H9 1805 aa11.84□□□□□ -0.51
PDLIM1-204ENST00000492511 ASXL2Q76L83 1435 aa11.84□□□□□ -0.51
PDLIM1-204ENST00000492511 FHOD3Q2V2M9 1422 aa11.82□□□□□ -0.52
PDLIM1-204ENST00000492511 DIP2BQ9P265 1576 aa11.81□□□□□ -0.52
PDLIM1-204ENST00000492511 ZCCHC11Q5TAX3 1644 aaKnown RBP11.79□□□□□ -0.52
PDLIM1-204ENST00000492511 ATP10BO94823 1461 aa11.79□□□□□ -0.52
PDLIM1-204ENST00000492511 ARID3CA6NKF2 412 aa11.79□□□□□ -0.52
PDLIM1-204ENST00000492511 ARHGAP35Q9NRY4 1499 aa11.78□□□□□ -0.52
PDLIM1-204ENST00000492511 EFCAB5A4FU69 1503 aa11.78□□□□□ -0.52
PDLIM1-204ENST00000492511 EPRSP07814 1512 aaKnown RBP11.77□□□□□ -0.52
PDLIM1-204ENST00000492511 NUP153P49790 1475 aaKnown RBP11.76□□□□□ -0.53
PDLIM1-204ENST00000492511 WDR7Q9Y4E6 1490 aa11.75□□□□□ -0.53
PDLIM1-204ENST00000492511 GLI2P10070 1586 aa11.75□□□□□ -0.53
PDLIM1-204ENST00000492511 RAPGEF6Q8TEU7 1601 aa11.74□□□□□ -0.53
PDLIM1-204ENST00000492511 KCNH8Q96L42 1107 aa11.73□□□□□ -0.53
PDLIM1-204ENST00000492511 KDM6BO15054 1643 aa11.71□□□□□ -0.54
PDLIM1-204ENST00000492511 LOC105371045A0A1W2PR82 267 aa11.7□□□□□ -0.54
PDLIM1-204ENST00000492511 FMN1Q68DA7 1419 aa11.69□□□□□ -0.54
PDLIM1-204ENST00000492511 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.69□□□□□ -0.54
PDLIM1-204ENST00000492511 HNRNPUL2Q1KMD3 747 aaKnown RBP11.69□□□□□ -0.54
PDLIM1-204ENST00000492511 TSPOAP1O95153 1857 aa11.68□□□□□ -0.54
PDLIM1-204ENST00000492511 PPRC1Q5VV67 1664 aaKnown RBP11.68□□□□□ -0.54
PDLIM1-204ENST00000492511 MAP3K4Q9Y6R4 1608 aa11.68□□□□□ -0.54
PDLIM1-204ENST00000492511 CLIP1P30622 1438 aa11.67□□□□□ -0.54
PDLIM1-204ENST00000492511 CD109Q6YHK3 1445 aa11.67□□□□□ -0.54
PDLIM1-204ENST00000492511 ATP1B4Q9UN42 357 aaPredicted RBP11.66□□□□□ -0.54
PDLIM1-204ENST00000492511 COL17A1Q9UMD9 1497 aaPredicted RBP11.65□□□□□ -0.54
PDLIM1-204ENST00000492511 PLEKHD1A6NEE1 506 aa11.65□□□□□ -0.54
PDLIM1-204ENST00000492511 CDK13Q14004 1512 aaKnown RBP11.65□□□□□ -0.55
PDLIM1-204ENST00000492511 MAGI3Q5TCQ9 1506 aa11.64□□□□□ -0.55
PDLIM1-204ENST00000492511 CASKIN1Q8WXD9 1431 aa11.62□□□□□ -0.55
PDLIM1-204ENST00000492511 CEP162Q5TB80 1403 aa11.61□□□□□ -0.55
PDLIM1-204ENST00000492511 TEX14Q8IWB6 1497 aa11.61□□□□□ -0.55
PDLIM1-204ENST00000492511 ABCA9Q8IUA7 1624 aa11.6□□□□□ -0.55
PDLIM1-204ENST00000492511 CFAP43Q8NDM7 1665 aa11.6□□□□□ -0.55
PDLIM1-204ENST00000492511 HECW1Q76N89 1606 aa11.6□□□□□ -0.55
PDLIM1-204ENST00000492511 PCF11O94913 1555 aaKnown RBP11.58□□□□□ -0.55
PDLIM1-204ENST00000492511 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.58□□□□□ -0.56
PDLIM1-204ENST00000492511 CDK11AQ9UQ88 783 aaPredicted RBP11.57□□□□□ -0.56
PDLIM1-204ENST00000492511 KDM4FA0A1W2PPD8 638 aa11.56□□□□□ -0.56
PDLIM1-204ENST00000492511 LRRIQ1Q96JM4 1722 aa11.56□□□□□ -0.56
PDLIM1-204ENST00000492511 FYCO1Q9BQS8 1478 aa11.56□□□□□ -0.56
PDLIM1-204ENST00000492511 TROQ12816 1431 aaPredicted RBP11.55□□□□□ -0.56
PDLIM1-204ENST00000492511 CCDC18Q5T9S5 1454 aa11.54□□□□□ -0.56
PDLIM1-204ENST00000492511 ARAP3Q8WWN8 1544 aa11.54□□□□□ -0.56
PDLIM1-204ENST00000492511 TTC37Q6PGP7 1564 aa11.54□□□□□ -0.56
PDLIM1-204ENST00000492511 PHLDB1Q86UU1 1377 aa11.54□□□□□ -0.56
PDLIM1-204ENST00000492511 NEO1Q92859 1461 aa11.53□□□□□ -0.56
PDLIM1-204ENST00000492511 PLCH2O75038 1416 aa11.52□□□□□ -0.56
PDLIM1-204ENST00000492511 RAPGEF3O95398 923 aa11.52□□□□□ -0.57
PDLIM1-204ENST00000492511 KIF14Q15058 1648 aa11.52□□□□□ -0.57
PDLIM1-204ENST00000492511 AKNAQ7Z591 1439 aa11.51□□□□□ -0.57
PDLIM1-204ENST00000492511 FANCAO15360 1455 aa11.5□□□□□ -0.57
PDLIM1-204ENST00000492511 ADGRL1O94910 1474 aa11.49□□□□□ -0.57
PDLIM1-204ENST00000492511 VPS8Q8N3P4 1428 aa11.47□□□□□ -0.57
PDLIM1-204ENST00000492511 EFCAB2Q5VUJ9 269 aa11.47□□□□□ -0.57
PDLIM1-204ENST00000492511 ILDR1Q86SU0 546 aaPredicted RBP11.46□□□□□ -0.57
PDLIM1-204ENST00000492511 FRMPD1Q5SYB0 1578 aa11.45□□□□□ -0.58
PDLIM1-204ENST00000492511 DENND4BO75064 1496 aaPredicted RBP11.45□□□□□ -0.58
PDLIM1-204ENST00000492511 SCAPERQ9BY12 1400 aa11.44□□□□□ -0.58
PDLIM1-204ENST00000492511 MTUS2Q5JR59 1369 aa11.43□□□□□ -0.58
PDLIM1-204ENST00000492511 GPATCH8Q9UKJ3 1502 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms