RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 IGF1RP08069 1367 aa23.79■■□□□ 1.4
COL6A3-211ENST00000491233 JPH4Q96JJ6 628 aa23.78■■□□□ 1.4
COL6A3-211ENST00000491233 KIAA0586Q9BVV6 1533 aa23.73■■□□□ 1.39
COL6A3-211ENST00000491233 KIF13AQ9H1H9 1805 aa23.67■■□□□ 1.38
COL6A3-211ENST00000491233 CARMIL1Q5VZK9 1371 aa23.65■■□□□ 1.38
COL6A3-211ENST00000491233 ADCY10Q96PN6 1610 aa23.63■■□□□ 1.37
COL6A3-211ENST00000491233 IQGAP2Q13576 1575 aa23.58■■□□□ 1.37
COL6A3-211ENST00000491233 MAPKBP1O60336 1514 aa23.56■■□□□ 1.36
COL6A3-211ENST00000491233 DIP2BQ9P265 1576 aa23.5■■□□□ 1.35
COL6A3-211ENST00000491233 RAPGEF2Q9Y4G8 1499 aa23.49■■□□□ 1.35
COL6A3-211ENST00000491233 NPM1P06748 294 aaKnown RBP eCLIP23.49■■□□□ 1.35
COL6A3-211ENST00000491233 ABCC10Q5T3U5 1492 aa23.49■■□□□ 1.35
COL6A3-211ENST00000491233 CARMIL2Q6F5E8 1435 aa23.48■■□□□ 1.35
COL6A3-211ENST00000491233 PTPRGP23470 1445 aa23.46■■□□□ 1.35
COL6A3-211ENST00000491233 TNIKQ9UKE5 1360 aa23.44■■□□□ 1.34
COL6A3-211ENST00000491233 CTTNBP2Q8WZ74 1663 aa23.43■■□□□ 1.34
COL6A3-211ENST00000491233 DISP1Q96F81 1524 aa23.42■■□□□ 1.34
COL6A3-211ENST00000491233 TTBK1Q5TCY1 1321 aaPredicted RBP23.41■■□□□ 1.34
COL6A3-211ENST00000491233 UGGT2Q9NYU1 1516 aa23.41■■□□□ 1.34
COL6A3-211ENST00000491233 FAM69CQ0P6D2 419 aa23.4■■□□□ 1.34
COL6A3-211ENST00000491233 KIAA0556O60303 1618 aa23.39■■□□□ 1.33
COL6A3-211ENST00000491233 ABCC2Q92887 1545 aa23.37■■□□□ 1.33
COL6A3-211ENST00000491233 TSPOAP1O95153 1857 aa23.35■■□□□ 1.33
COL6A3-211ENST00000491233 UHRF1BP1LA0JNW5 1464 aa23.33■■□□□ 1.33
COL6A3-211ENST00000491233 UACAQ9BZF9 1416 aa23.31■■□□□ 1.32
COL6A3-211ENST00000491233 PRXQ9BXM0 1461 aa23.28■■□□□ 1.32
COL6A3-211ENST00000491233 KDM6BO15054 1643 aa23.26■■□□□ 1.31
COL6A3-211ENST00000491233 ASXL2Q76L83 1435 aa23.26■■□□□ 1.31
COL6A3-211ENST00000491233 ZCCHC11Q5TAX3 1644 aaKnown RBP23.26■■□□□ 1.31
COL6A3-211ENST00000491233 PLB1Q6P1J6 1458 aa23.24■■□□□ 1.31
COL6A3-211ENST00000491233 KDM5BQ9UGL1 1544 aa23.23■■□□□ 1.31
COL6A3-211ENST00000491233 AEBP2Q6ZN18 517 aaPredicted RBP23.23■■□□□ 1.31
COL6A3-211ENST00000491233 GLI2P10070 1586 aa23.23■■□□□ 1.31
COL6A3-211ENST00000491233 GOLGA3Q08378 1498 aa23.21■■□□□ 1.31
COL6A3-211ENST00000491233 PPRC1Q5VV67 1664 aaKnown RBP23.21■■□□□ 1.31
COL6A3-211ENST00000491233 EPRSP07814 1512 aaKnown RBP23.14■■□□□ 1.3
COL6A3-211ENST00000491233 MAP3K4Q9Y6R4 1608 aa23.14■■□□□ 1.29
COL6A3-211ENST00000491233 ABCA8O94911 1581 aa23.14■■□□□ 1.29
COL6A3-211ENST00000491233 WDR7Q9Y4E6 1490 aa23.08■■□□□ 1.29
COL6A3-211ENST00000491233 CSRNP3Q8WYN3 585 aa23.05■■□□□ 1.28
COL6A3-211ENST00000491233 EEA1Q15075 1411 aa23.05■■□□□ 1.28
COL6A3-211ENST00000491233 SAMD9Q5K651 1589 aa23.04■■□□□ 1.28
COL6A3-211ENST00000491233 TEX14Q8IWB6 1497 aa23.01■■□□□ 1.27
COL6A3-211ENST00000491233 CFAP43Q8NDM7 1665 aa23■■□□□ 1.27
COL6A3-211ENST00000491233 P3H3Q8IVL6 736 aa22.96■■□□□ 1.27
COL6A3-211ENST00000491233 COL17A1Q9UMD9 1497 aaPredicted RBP22.95■■□□□ 1.26
COL6A3-211ENST00000491233 RAPGEF6Q8TEU7 1601 aa22.93■■□□□ 1.26
COL6A3-211ENST00000491233 KIF21BO75037 1637 aa22.93■■□□□ 1.26
COL6A3-211ENST00000491233 MAGI3Q5TCQ9 1506 aa22.89■■□□□ 1.26
COL6A3-211ENST00000491233 FAM9AQ8IZU1 332 aaPredicted RBP22.89■■□□□ 1.25
COL6A3-211ENST00000491233 ATP10BO94823 1461 aa22.89■■□□□ 1.25
COL6A3-211ENST00000491233 ARID3CA6NKF2 412 aa22.88■■□□□ 1.25
COL6A3-211ENST00000491233 CD109Q6YHK3 1445 aa22.88■■□□□ 1.25
COL6A3-211ENST00000491233 KCNH8Q96L42 1107 aa22.87■■□□□ 1.25
COL6A3-211ENST00000491233 KDM4FA0A1W2PPD8 638 aa22.86■■□□□ 1.25
COL6A3-211ENST00000491233 FHOD3Q2V2M9 1422 aa22.84■■□□□ 1.25
COL6A3-211ENST00000491233 RANGAP1P46060 587 aaPredicted RBP22.82■■□□□ 1.24
COL6A3-211ENST00000491233 ABCA9Q8IUA7 1624 aa22.82■■□□□ 1.24
COL6A3-211ENST00000491233 EFCAB5A4FU69 1503 aa22.82■■□□□ 1.24
COL6A3-211ENST00000491233 ADGRL1O94910 1474 aa22.8■■□□□ 1.24
COL6A3-211ENST00000491233 NUP153P49790 1475 aaKnown RBP22.8■■□□□ 1.24
COL6A3-211ENST00000491233 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
COL6A3-211ENST00000491233 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.71■■□□□ 1.23
COL6A3-211ENST00000491233 HNRNPUL2Q1KMD3 747 aaKnown RBP22.71■■□□□ 1.23
COL6A3-211ENST00000491233 ARAP3Q8WWN8 1544 aa22.7■■□□□ 1.22
COL6A3-211ENST00000491233 EHMT2Q96KQ7 1210 aa22.66■■□□□ 1.22
COL6A3-211ENST00000491233 NEO1Q92859 1461 aa22.64■■□□□ 1.21
COL6A3-211ENST00000491233 UBTFP17480 764 aaKnown RBP22.62■■□□□ 1.21
COL6A3-211ENST00000491233 PHLDB1Q86UU1 1377 aa22.62■■□□□ 1.21
COL6A3-211ENST00000491233 CDK13Q14004 1512 aaKnown RBP22.62■■□□□ 1.21
COL6A3-211ENST00000491233 FRMPD1Q5SYB0 1578 aa22.6■■□□□ 1.21
COL6A3-211ENST00000491233 TTC37Q6PGP7 1564 aa22.6■■□□□ 1.21
COL6A3-211ENST00000491233 HECW1Q76N89 1606 aa22.6■■□□□ 1.21
COL6A3-211ENST00000491233 ARHGAP35Q9NRY4 1499 aa22.6■■□□□ 1.21
COL6A3-211ENST00000491233 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.59■■□□□ 1.21
COL6A3-211ENST00000491233 CFAP74Q9C0B2 1584 aa22.58■■□□□ 1.2
COL6A3-211ENST00000491233 PLEKHD1A6NEE1 506 aa22.57■■□□□ 1.2
COL6A3-211ENST00000491233 FMN1Q68DA7 1419 aa22.56■■□□□ 1.2
COL6A3-211ENST00000491233 RICTORQ6R327 1708 aa22.54■■□□□ 1.2
COL6A3-211ENST00000491233 RAPGEF3O95398 923 aa22.52■■□□□ 1.2
COL6A3-211ENST00000491233 FANCAO15360 1455 aa22.51■■□□□ 1.19
COL6A3-211ENST00000491233 LRRIQ1Q96JM4 1722 aa22.5■■□□□ 1.19
COL6A3-211ENST00000491233 ARHGEF40Q8TER5 1519 aa22.49■■□□□ 1.19
COL6A3-211ENST00000491233 HECW2Q9P2P5 1572 aa22.48■■□□□ 1.19
COL6A3-211ENST00000491233 AKNAQ7Z591 1439 aa22.48■■□□□ 1.19
COL6A3-211ENST00000491233 DENND4BO75064 1496 aaPredicted RBP22.47■■□□□ 1.19
COL6A3-211ENST00000491233 MYO5CQ9NQX4 1742 aa22.47■■□□□ 1.19
COL6A3-211ENST00000491233 ADAMTSL3P82987 1691 aa22.46■■□□□ 1.19
COL6A3-211ENST00000491233 ATP1B4Q9UN42 357 aaPredicted RBP22.45■■□□□ 1.18
COL6A3-211ENST00000491233 KIF14Q15058 1648 aa22.45■■□□□ 1.18
COL6A3-211ENST00000491233 BCORL1Q5H9F3 1711 aa22.43■■□□□ 1.18
COL6A3-211ENST00000491233 ZMYM4Q5VZL5 1548 aa22.43■■□□□ 1.18
COL6A3-211ENST00000491233 PCF11O94913 1555 aaKnown RBP22.42■■□□□ 1.18
COL6A3-211ENST00000491233 PLCH2O75038 1416 aa22.39■■□□□ 1.17
COL6A3-211ENST00000491233 MADDQ8WXG6 1647 aa22.39■■□□□ 1.17
COL6A3-211ENST00000491233 TROQ12816 1431 aaPredicted RBP22.38■■□□□ 1.17
COL6A3-211ENST00000491233 ZFYVE16Q7Z3T8 1539 aa22.37■■□□□ 1.17
COL6A3-211ENST00000491233 CDK11AQ9UQ88 783 aaPredicted RBP22.35■■□□□ 1.17
COL6A3-211ENST00000491233 PTPRMP28827 1452 aa22.34■■□□□ 1.17
COL6A3-211ENST00000491233 CLIP1P30622 1438 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms