RNA–Protein interactions for RNA: ENST00000490690.1

SHROOM3-209, Transcript of shroom family member 3, humanhuman

TSL 4

Gene SHROOM3, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-209ENST00000490690 DNAJC5Q9H3Z4 198 aa32.46■■■□□ 2.79
SHROOM3-209ENST00000490690 IQGAP2Q13576 1575 aa32.37■■■□□ 2.77
SHROOM3-209ENST00000490690 JPH4Q96JJ6 628 aa32.36■■■□□ 2.77
SHROOM3-209ENST00000490690 UBTFP17480 764 aaKnown RBP32.33■■■□□ 2.77
SHROOM3-209ENST00000490690 CTTNBP2Q8WZ74 1663 aa32.32■■■□□ 2.76
SHROOM3-209ENST00000490690 SHROOM2Q13796 1616 aa32.31■■■□□ 2.76
SHROOM3-209ENST00000490690 CARMIL2Q6F5E8 1435 aa32.25■■■□□ 2.75
SHROOM3-209ENST00000490690 UGGT2Q9NYU1 1516 aa32.23■■■□□ 2.75
SHROOM3-209ENST00000490690 PRG4Q92954 1404 aaPredicted RBP32.23■■■□□ 2.75
SHROOM3-209ENST00000490690 ARHGEF11O15085 1522 aa32.22■■■□□ 2.75
SHROOM3-209ENST00000490690 TNIKQ9UKE5 1360 aa32.15■■■□□ 2.74
SHROOM3-209ENST00000490690 EHMT2Q96KQ7 1210 aa32.14■■■□□ 2.74
SHROOM3-209ENST00000490690 RIMBP3CA6NJZ7 1639 aa32.11■■■□□ 2.73
SHROOM3-209ENST00000490690 RIMBP3BA6NNM3 1639 aa32.11■■■□□ 2.73
SHROOM3-209ENST00000490690 RIMBP3Q9UFD9 1639 aa32.11■■■□□ 2.73
SHROOM3-209ENST00000490690 EFCAB5A4FU69 1503 aa32.05■■■□□ 2.72
SHROOM3-209ENST00000490690 DISP1Q96F81 1524 aa32.05■■■□□ 2.72
SHROOM3-209ENST00000490690 KIAA0556O60303 1618 aa32.03■■■□□ 2.72
SHROOM3-209ENST00000490690 ERCC6L2Q5T890 1561 aa31.98■■■□□ 2.71
SHROOM3-209ENST00000490690 SAMD9Q5K651 1589 aa31.97■■■□□ 2.71
SHROOM3-209ENST00000490690 ARAP1Q96P48 1450 aa31.97■■■□□ 2.71
SHROOM3-209ENST00000490690 PTPRGP23470 1445 aa31.96■■■□□ 2.71
SHROOM3-209ENST00000490690 LOC105371045A0A1W2PR82 267 aa31.92■■■□□ 2.7
SHROOM3-209ENST00000490690 RANGAP1P46060 587 aaPredicted RBP31.91■■■□□ 2.7
SHROOM3-209ENST00000490690 CYB5RLQ6IPT4 315 aa31.9■■■□□ 2.7
SHROOM3-209ENST00000490690 CLIP1P30622 1438 aa31.87■■■□□ 2.69
SHROOM3-209ENST00000490690 ARHGAP35Q9NRY4 1499 aa31.83■■■□□ 2.69
SHROOM3-209ENST00000490690 CEP162Q5TB80 1403 aa31.82■■■□□ 2.68
SHROOM3-209ENST00000490690 P3H3Q8IVL6 736 aa31.81■■■□□ 2.68
SHROOM3-209ENST00000490690 FHOD3Q2V2M9 1422 aa31.78■■■□□ 2.68
SHROOM3-209ENST00000490690 FMN1Q68DA7 1419 aa31.78■■■□□ 2.68
SHROOM3-209ENST00000490690 UACAQ9BZF9 1416 aa31.76■■■□□ 2.68
SHROOM3-209ENST00000490690 TTBK1Q5TCY1 1321 aaPredicted RBP31.75■■■□□ 2.67
SHROOM3-209ENST00000490690 UHRF1BP1LA0JNW5 1464 aa31.72■■■□□ 2.67
SHROOM3-209ENST00000490690 NPM1P06748 294 aaKnown RBP eCLIP31.68■■■□□ 2.66
SHROOM3-209ENST00000490690 ABCC2Q92887 1545 aa31.67■■■□□ 2.66
SHROOM3-209ENST00000490690 ABCA8O94911 1581 aa31.64■■■□□ 2.65
SHROOM3-209ENST00000490690 PLB1Q6P1J6 1458 aa31.62■■■□□ 2.65
SHROOM3-209ENST00000490690 ADCY10Q96PN6 1610 aa31.58■■■□□ 2.65
SHROOM3-209ENST00000490690 RAPGEF6Q8TEU7 1601 aa31.57■■■□□ 2.64
SHROOM3-209ENST00000490690 KDM5BQ9UGL1 1544 aa31.53■■■□□ 2.64
SHROOM3-209ENST00000490690 CASKIN1Q8WXD9 1431 aa31.51■■■□□ 2.64
SHROOM3-209ENST00000490690 HECW1Q76N89 1606 aa31.49■■■□□ 2.63
SHROOM3-209ENST00000490690 FYCO1Q9BQS8 1478 aa31.47■■■□□ 2.63
SHROOM3-209ENST00000490690 VPS8Q8N3P4 1428 aa31.45■■■□□ 2.63
SHROOM3-209ENST00000490690 NUP153P49790 1475 aaKnown RBP31.45■■■□□ 2.62
SHROOM3-209ENST00000490690 MAPKBP1O60336 1514 aa31.43■■■□□ 2.62
SHROOM3-209ENST00000490690 ATP1B4Q9UN42 357 aaPredicted RBP31.42■■■□□ 2.62
SHROOM3-209ENST00000490690 CCDC18Q5T9S5 1454 aa31.4■■■□□ 2.62
SHROOM3-209ENST00000490690 PCF11O94913 1555 aaKnown RBP31.39■■■□□ 2.61
SHROOM3-209ENST00000490690 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.38■■■□□ 2.61
SHROOM3-209ENST00000490690 HNRNPUL2Q1KMD3 747 aaKnown RBP31.38■■■□□ 2.61
SHROOM3-209ENST00000490690 CDK11AQ9UQ88 783 aaPredicted RBP31.38■■■□□ 2.61
SHROOM3-209ENST00000490690 ATP10BO94823 1461 aa31.38■■■□□ 2.61
SHROOM3-209ENST00000490690 ZCCHC11Q5TAX3 1644 aaKnown RBP31.37■■■□□ 2.61
SHROOM3-209ENST00000490690 EPRSP07814 1512 aaKnown RBP31.35■■■□□ 2.61
SHROOM3-209ENST00000490690 ASXL2Q76L83 1435 aa31.31■■■□□ 2.6
SHROOM3-209ENST00000490690 PLEKHD1A6NEE1 506 aa31.29■■■□□ 2.6
SHROOM3-209ENST00000490690 WDR7Q9Y4E6 1490 aa31.27■■■□□ 2.6
SHROOM3-209ENST00000490690 ARID3CA6NKF2 412 aa31.27■■■□□ 2.6
SHROOM3-209ENST00000490690 APLP2Q06481 763 aa31.24■■■□□ 2.59
SHROOM3-209ENST00000490690 CDK13Q14004 1512 aaKnown RBP31.22■■■□□ 2.59
SHROOM3-209ENST00000490690 ABCC10Q5T3U5 1492 aa31.21■■■□□ 2.59
SHROOM3-209ENST00000490690 MAP3K1Q13233 1512 aa31.18■■■□□ 2.58
SHROOM3-209ENST00000490690 TRHP20396 242 aaPredicted RBP31.14■■■□□ 2.58
SHROOM3-209ENST00000490690 TROQ12816 1431 aaPredicted RBP31.13■■■□□ 2.57
SHROOM3-209ENST00000490690 GLI2P10070 1586 aa31.1■■■□□ 2.57
SHROOM3-209ENST00000490690 FAM69CQ0P6D2 419 aa31.1■■■□□ 2.57
SHROOM3-209ENST00000490690 DIP2BQ9P265 1576 aa31.09■■■□□ 2.57
SHROOM3-209ENST00000490690 MTUS2Q5JR59 1369 aa31.09■■■□□ 2.57
SHROOM3-209ENST00000490690 KCNH8Q96L42 1107 aa31.08■■■□□ 2.57
SHROOM3-209ENST00000490690 LRRIQ1Q96JM4 1722 aa31.07■■■□□ 2.56
SHROOM3-209ENST00000490690 TIAM1Q13009 1591 aa31.07■■■□□ 2.56
SHROOM3-209ENST00000490690 CFAP43Q8NDM7 1665 aa31.05■■■□□ 2.56
SHROOM3-209ENST00000490690 EHBP1L1Q8N3D4 1523 aa31.03■■■□□ 2.56
SHROOM3-209ENST00000490690 KIF14Q15058 1648 aa31.01■■■□□ 2.55
SHROOM3-209ENST00000490690 LRRC9Q6ZRR7 1453 aa30.96■■■□□ 2.55
SHROOM3-209ENST00000490690 ABCA9Q8IUA7 1624 aa30.95■■■□□ 2.55
SHROOM3-209ENST00000490690 CD109Q6YHK3 1445 aa30.93■■■□□ 2.54
SHROOM3-209ENST00000490690 KIF13AQ9H1H9 1805 aa30.93■■■□□ 2.54
SHROOM3-209ENST00000490690 MAGI3Q5TCQ9 1506 aa30.92■■■□□ 2.54
SHROOM3-209ENST00000490690 TEX14Q8IWB6 1497 aa30.9■■■□□ 2.54
SHROOM3-209ENST00000490690 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.89■■■□□ 2.54
SHROOM3-209ENST00000490690 MAP3K4Q9Y6R4 1608 aa30.89■■■□□ 2.54
SHROOM3-209ENST00000490690 SUPT6HQ7KZ85 1726 aaKnown RBP30.84■■■□□ 2.53
SHROOM3-209ENST00000490690 ARAP3Q8WWN8 1544 aa30.83■■■□□ 2.53
SHROOM3-209ENST00000490690 PHLDB1Q86UU1 1377 aa30.82■■■□□ 2.52
SHROOM3-209ENST00000490690 CCNB3Q8WWL7 1395 aa30.81■■■□□ 2.52
SHROOM3-209ENST00000490690 KANK4Q5T7N3 995 aaPredicted RBP30.81■■■□□ 2.52
SHROOM3-209ENST00000490690 PLCH2O75038 1416 aa30.81■■■□□ 2.52
SHROOM3-209ENST00000490690 TTC37Q6PGP7 1564 aa30.8■■■□□ 2.52
SHROOM3-209ENST00000490690 NCOA2Q15596 1464 aa30.78■■■□□ 2.52
SHROOM3-209ENST00000490690 EFCAB2Q5VUJ9 269 aa30.75■■■□□ 2.51
SHROOM3-209ENST00000490690 NEO1Q92859 1461 aa30.75■■■□□ 2.51
SHROOM3-209ENST00000490690 CFAP74Q9C0B2 1584 aa30.75■■■□□ 2.51
SHROOM3-209ENST00000490690 MYO5CQ9NQX4 1742 aa30.74■■■□□ 2.51
SHROOM3-209ENST00000490690 FANCAO15360 1455 aa30.7■■■□□ 2.51
SHROOM3-209ENST00000490690 GPATCH8Q9UKJ3 1502 aaKnown RBP30.7■■■□□ 2.51
SHROOM3-209ENST00000490690 ARHGAP5Q13017 1502 aa30.69■■■□□ 2.5
SHROOM3-209ENST00000490690 ITSN2Q9NZM3 1697 aa30.69■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms