RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, human

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRM-206	ENST00000490101	KIF27	Q86VH2	1401 aa		30.48	■■■□□ 2.47
SRM-206	ENST00000490101	IGF1R	P08069	1367 aa		30.44	■■■□□ 2.46
SRM-206	ENST00000490101	CUL7	Q14999	1698 aa		30.4	■■■□□ 2.46
SRM-206	ENST00000490101	KIAA0586	Q9BVV6	1533 aa		30.32	■■■□□ 2.44
SRM-206	ENST00000490101	CARMIL1	Q5VZK9	1371 aa		30.26	■■■□□ 2.43
SRM-206	ENST00000490101	KIF13A	Q9H1H9	1805 aa		30.22	■■■□□ 2.43
SRM-206	ENST00000490101	NPM1	P06748	294 aa	Known RBP eCLIP	30.2	■■■□□ 2.43
SRM-206	ENST00000490101	ADCY10	Q96PN6	1610 aa		30.18	■■■□□ 2.42
SRM-206	ENST00000490101	TTBK1	Q5TCY1	1321 aa	Predicted RBP	30.13	■■■□□ 2.41
SRM-206	ENST00000490101	MAPKBP1	O60336	1514 aa		30.1	■■■□□ 2.41
SRM-206	ENST00000490101	FAM69C	Q0P6D2	419 aa		30.09	■■■□□ 2.41
SRM-206	ENST00000490101	ABCC10	Q5T3U5	1492 aa		30.08	■■■□□ 2.41
SRM-206	ENST00000490101	IQGAP2	Q13576	1575 aa		30.07	■■■□□ 2.4
SRM-206	ENST00000490101	PTPRG	P23470	1445 aa		30.06	■■■□□ 2.4
SRM-206	ENST00000490101	AEBP2	Q6ZN18	517 aa	Predicted RBP	30.05	■■■□□ 2.4
SRM-206	ENST00000490101	CARMIL2	Q6F5E8	1435 aa		30.05	■■■□□ 2.4
SRM-206	ENST00000490101	DIP2B	Q9P265	1576 aa		30.03	■■■□□ 2.4
SRM-206	ENST00000490101	TNIK	Q9UKE5	1360 aa		30	■■■□□ 2.39
SRM-206	ENST00000490101	RAPGEF2	Q9Y4G8	1499 aa		29.99	■■■□□ 2.39
SRM-206	ENST00000490101	DISP1	Q96F81	1524 aa		29.91	■■■□□ 2.38
SRM-206	ENST00000490101	EEA1	Q15075	1411 aa		29.9	■■■□□ 2.38
SRM-206	ENST00000490101	ABCC2	Q92887	1545 aa		29.89	■■■□□ 2.38
SRM-206	ENST00000490101	TSPOAP1	O95153	1857 aa		29.87	■■■□□ 2.37
SRM-206	ENST00000490101	UGGT2	Q9NYU1	1516 aa		29.85	■■■□□ 2.37
SRM-206	ENST00000490101	UACA	Q9BZF9	1416 aa		29.83	■■■□□ 2.37
SRM-206	ENST00000490101	UHRF1BP1L	A0JNW5	1464 aa		29.8	■■■□□ 2.36
SRM-206	ENST00000490101	FAM9A	Q8IZU1	332 aa	Predicted RBP	29.8	■■■□□ 2.36
SRM-206	ENST00000490101	KIAA0556	O60303	1618 aa		29.8	■■■□□ 2.36
SRM-206	ENST00000490101	ASXL2	Q76L83	1435 aa		29.79	■■■□□ 2.36
SRM-206	ENST00000490101	KDM6B	O15054	1643 aa		29.78	■■■□□ 2.36
SRM-206	ENST00000490101	CTTNBP2	Q8WZ74	1663 aa		29.77	■■■□□ 2.36
SRM-206	ENST00000490101	PLB1	Q6P1J6	1458 aa		29.75	■■■□□ 2.35
SRM-206	ENST00000490101	CSRNP3	Q8WYN3	585 aa		29.72	■■■□□ 2.35
SRM-206	ENST00000490101	KDM5B	Q9UGL1	1544 aa		29.69	■■■□□ 2.34
SRM-206	ENST00000490101	ZCCHC11	Q5TAX3	1644 aa	Known RBP	29.67	■■■□□ 2.34
SRM-206	ENST00000490101	PRX	Q9BXM0	1461 aa		29.67	■■■□□ 2.34
SRM-206	ENST00000490101	GLI2	P10070	1586 aa		29.66	■■■□□ 2.34
SRM-206	ENST00000490101	GOLGA3	Q08378	1498 aa		29.63	■■■□□ 2.33
SRM-206	ENST00000490101	PPRC1	Q5VV67	1664 aa	Known RBP	29.62	■■■□□ 2.33
SRM-206	ENST00000490101	EPRS	P07814	1512 aa	Known RBP	29.61	■■■□□ 2.33
SRM-206	ENST00000490101	MAP3K4	Q9Y6R4	1608 aa		29.53	■■■□□ 2.32
SRM-206	ENST00000490101	WDR7	Q9Y4E6	1490 aa		29.51	■■■□□ 2.31
SRM-206	ENST00000490101	ABCA8	O94911	1581 aa		29.51	■■■□□ 2.31
SRM-206	ENST00000490101	KIF21B	O75037	1637 aa		29.49	■■■□□ 2.31
SRM-206	ENST00000490101	LOC105371045	A0A1W2PR82	267 aa		29.48	■■■□□ 2.31
SRM-206	ENST00000490101	P3H3	Q8IVL6	736 aa		29.46	■■■□□ 2.31
SRM-206	ENST00000490101	TEX14	Q8IWB6	1497 aa		29.45	■■■□□ 2.31
SRM-206	ENST00000490101	KDM4F	A0A1W2PPD8	638 aa		29.43	■■■□□ 2.3
SRM-206	ENST00000490101	KCNH8	Q96L42	1107 aa		29.42	■■■□□ 2.3
SRM-206	ENST00000490101	COL17A1	Q9UMD9	1497 aa	Predicted RBP	29.42	■■■□□ 2.3
SRM-206	ENST00000490101	ARID3C	A6NKF2	412 aa		29.39	■■■□□ 2.3
SRM-206	ENST00000490101	CD109	Q6YHK3	1445 aa		29.33	■■■□□ 2.29
SRM-206	ENST00000490101	CFAP43	Q8NDM7	1665 aa		29.32	■■■□□ 2.28
SRM-206	ENST00000490101	SAMD9	Q5K651	1589 aa		29.32	■■■□□ 2.28
SRM-206	ENST00000490101	RANGAP1	P46060	587 aa	Predicted RBP	29.31	■■■□□ 2.28
SRM-206	ENST00000490101	EHMT2	Q96KQ7	1210 aa		29.3	■■■□□ 2.28
SRM-206	ENST00000490101	MAGI3	Q5TCQ9	1506 aa		29.27	■■■□□ 2.28
SRM-206	ENST00000490101	ATP10B	O94823	1461 aa		29.27	■■■□□ 2.28
SRM-206	ENST00000490101	ADGRL1	O94910	1474 aa		29.24	■■■□□ 2.27
SRM-206	ENST00000490101	UBTF	P17480	764 aa	Known RBP	29.23	■■■□□ 2.27
SRM-206	ENST00000490101	RAPGEF6	Q8TEU7	1601 aa		29.23	■■■□□ 2.27
SRM-206	ENST00000490101	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	29.18	■■■□□ 2.26
SRM-206	ENST00000490101	HNRNPUL2	Q1KMD3	747 aa	Known RBP	29.18	■■■□□ 2.26
SRM-206	ENST00000490101	FHOD3	Q2V2M9	1422 aa		29.18	■■■□□ 2.26
SRM-206	ENST00000490101	NUP153	P49790	1475 aa	Known RBP	29.1	■■■□□ 2.25
SRM-206	ENST00000490101	ABCA9	Q8IUA7	1624 aa		29.1	■■■□□ 2.25
SRM-206	ENST00000490101	EFCAB5	A4FU69	1503 aa		29.04	■■■□□ 2.24
SRM-206	ENST00000490101	ARAP3	Q8WWN8	1544 aa		29.04	■■■□□ 2.24
SRM-206	ENST00000490101	CEP162	Q5TB80	1403 aa		29	■■■□□ 2.23
SRM-206	ENST00000490101	PLEKHD1	A6NEE1	506 aa		28.95	■■■□□ 2.22
SRM-206	ENST00000490101	PHLDB1	Q86UU1	1377 aa		28.95	■■■□□ 2.22
SRM-206	ENST00000490101	NEO1	Q92859	1461 aa		28.94	■■■□□ 2.22
SRM-206	ENST00000490101	RAPGEF3	O95398	923 aa		28.93	■■■□□ 2.22
SRM-206	ENST00000490101	CLIP1	P30622	1438 aa		28.9	■■■□□ 2.22
SRM-206	ENST00000490101	CDK13	Q14004	1512 aa	Known RBP	28.88	■■■□□ 2.21
SRM-206	ENST00000490101	FRMPD1	Q5SYB0	1578 aa		28.84	■■■□□ 2.21
SRM-206	ENST00000490101	ATP1B4	Q9UN42	357 aa	Predicted RBP	28.84	■■■□□ 2.21
SRM-206	ENST00000490101	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	28.84	■■■□□ 2.21
SRM-206	ENST00000490101	HECW2	Q9P2P5	1572 aa		28.84	■■■□□ 2.21
SRM-206	ENST00000490101	TTC37	Q6PGP7	1564 aa		28.83	■■■□□ 2.21
SRM-206	ENST00000490101	ARHGAP35	Q9NRY4	1499 aa		28.8	■■■□□ 2.2
SRM-206	ENST00000490101	FANCA	O15360	1455 aa		28.78	■■■□□ 2.2
SRM-206	ENST00000490101	FMN1	Q68DA7	1419 aa		28.78	■■■□□ 2.2
SRM-206	ENST00000490101	AKNA	Q7Z591	1439 aa		28.77	■■■□□ 2.2
SRM-206	ENST00000490101	CFAP74	Q9C0B2	1584 aa		28.77	■■■□□ 2.2
SRM-206	ENST00000490101	HECW1	Q76N89	1606 aa		28.76	■■■□□ 2.2
SRM-206	ENST00000490101	DENND4B	O75064	1496 aa	Predicted RBP	28.76	■■■□□ 2.19
SRM-206	ENST00000490101	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.73	■■■□□ 2.19
SRM-206	ENST00000490101	RICTOR	Q6R327	1708 aa		28.72	■■■□□ 2.19
SRM-206	ENST00000490101	ADAMTSL3	P82987	1691 aa		28.7	■■■□□ 2.18
SRM-206	ENST00000490101	ARHGEF40	Q8TER5	1519 aa		28.69	■■■□□ 2.18
SRM-206	ENST00000490101	BCORL1	Q5H9F3	1711 aa		28.66	■■■□□ 2.18
SRM-206	ENST00000490101	PTPRM	P28827	1452 aa		28.65	■■■□□ 2.18
SRM-206	ENST00000490101	CDK11A	Q9UQ88	783 aa	Predicted RBP	28.64	■■■□□ 2.18
SRM-206	ENST00000490101	PLCH2	O75038	1416 aa		28.63	■■■□□ 2.17
SRM-206	ENST00000490101	MADD	Q8WXG6	1647 aa		28.62	■■■□□ 2.17
SRM-206	ENST00000490101	KIF14	Q15058	1648 aa		28.61	■■■□□ 2.17
SRM-206	ENST00000490101	ZMYM4	Q5VZL5	1548 aa		28.6	■■■□□ 2.17
SRM-206	ENST00000490101	MYO5C	Q9NQX4	1742 aa		28.6	■■■□□ 2.17
SRM-206	ENST00000490101	SCAPER	Q9BY12	1400 aa		28.6	■■■□□ 2.17

Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms