RNA–Protein interactions for RNA: ENST00000489861.2

COL9A1-209, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 3

Gene COL9A1, Length 243 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-209ENST00000489861 ABCA5Q8WWZ7 1642 aa14.01□□□□□ -0.17
COL9A1-209ENST00000489861 MAPKBP1O60336 1514 aa14□□□□□ -0.17
COL9A1-209ENST00000489861 PRG4Q92954 1404 aaPredicted RBP13.95□□□□□ -0.18
COL9A1-209ENST00000489861 ADAMTS12P58397 1594 aa13.94□□□□□ -0.18
COL9A1-209ENST00000489861 ADCY10Q96PN6 1610 aa13.93□□□□□ -0.18
COL9A1-209ENST00000489861 ABCA10Q8WWZ4 1543 aa13.93□□□□□ -0.18
COL9A1-209ENST00000489861 NPM1P06748 294 aaKnown RBP eCLIP13.92□□□□□ -0.18
COL9A1-209ENST00000489861 LMTK3Q96Q04 1460 aa13.91□□□□□ -0.18
COL9A1-209ENST00000489861 PPRC1Q5VV67 1664 aaKnown RBP13.88□□□□□ -0.19
COL9A1-209ENST00000489861 JPH4Q96JJ6 628 aa13.87□□□□□ -0.19
COL9A1-209ENST00000489861 SENP3Q9H4L4 574 aaPredicted RBP13.87□□□□□ -0.19
COL9A1-209ENST00000489861 COL17A1Q9UMD9 1497 aaPredicted RBP13.84□□□□□ -0.19
COL9A1-209ENST00000489861 FHAD1B1AJZ9 1412 aa13.83□□□□□ -0.2
COL9A1-209ENST00000489861 ILDR2Q71H61 639 aa13.83□□□□□ -0.2
COL9A1-209ENST00000489861 SOCS7O14512 581 aa13.8□□□□□ -0.2
COL9A1-209ENST00000489861 RUSC2Q8N2Y8 1516 aa13.77□□□□□ -0.21
COL9A1-209ENST00000489861 GLI2P10070 1586 aa13.74□□□□□ -0.21
COL9A1-209ENST00000489861 ERICH3Q5RHP9 1530 aa13.73□□□□□ -0.21
COL9A1-209ENST00000489861 TOP2BQ02880 1626 aa13.72□□□□□ -0.21
COL9A1-209ENST00000489861 WRNQ14191 1432 aaPredicted RBP eCLIP13.7□□□□□ -0.22
COL9A1-209ENST00000489861 ASXL2Q76L83 1435 aa13.69□□□□□ -0.22
COL9A1-209ENST00000489861 DISP3Q9P2K9 1392 aa13.68□□□□□ -0.22
COL9A1-209ENST00000489861 MAP3K4Q9Y6R4 1608 aa13.67□□□□□ -0.22
COL9A1-209ENST00000489861 PLB1Q6P1J6 1458 aa13.66□□□□□ -0.22
COL9A1-209ENST00000489861 CUL7Q14999 1698 aa13.65□□□□□ -0.22
COL9A1-209ENST00000489861 ABCC2Q92887 1545 aa13.64□□□□□ -0.23
COL9A1-209ENST00000489861 PHF23Q9BUL5 403 aaPredicted RBP13.64□□□□□ -0.23
COL9A1-209ENST00000489861 KIF21BO75037 1637 aa13.61□□□□□ -0.23
COL9A1-209ENST00000489861 PTPRGP23470 1445 aa13.61□□□□□ -0.23
COL9A1-209ENST00000489861 BIVM-ERCC5R4GMW8 1640 aa13.61□□□□□ -0.23
COL9A1-209ENST00000489861 EPRSP07814 1512 aaKnown RBP13.6□□□□□ -0.23
COL9A1-209ENST00000489861 TEX14Q8IWB6 1497 aa13.6□□□□□ -0.23
COL9A1-209ENST00000489861 TTBK1Q5TCY1 1321 aaPredicted RBP13.59□□□□□ -0.23
COL9A1-209ENST00000489861 KIAA0586Q9BVV6 1533 aa13.59□□□□□ -0.23
COL9A1-209ENST00000489861 PTPRMP28827 1452 aa13.56□□□□□ -0.24
COL9A1-209ENST00000489861 PCF11O94913 1555 aaKnown RBP13.55□□□□□ -0.24
COL9A1-209ENST00000489861 ADAMTSL3P82987 1691 aa13.54□□□□□ -0.24
COL9A1-209ENST00000489861 CERKQ8TCT0 537 aa13.54□□□□□ -0.24
COL9A1-209ENST00000489861 UHRF1BP1LA0JNW5 1464 aa13.53□□□□□ -0.24
COL9A1-209ENST00000489861 SPATA31D1Q6ZQQ2 1576 aa13.51□□□□□ -0.25
COL9A1-209ENST00000489861 TNIKQ9UKE5 1360 aa13.51□□□□□ -0.25
COL9A1-209ENST00000489861 KDM5BQ9UGL1 1544 aa13.49□□□□□ -0.25
COL9A1-209ENST00000489861 ZCCHC11Q5TAX3 1644 aaKnown RBP13.49□□□□□ -0.25
COL9A1-209ENST00000489861 UACAQ9BZF9 1416 aa13.47□□□□□ -0.25
COL9A1-209ENST00000489861 HSPA2P54652 639 aa13.46□□□□□ -0.25
COL9A1-209ENST00000489861 MAGI3Q5TCQ9 1506 aa13.44□□□□□ -0.26
COL9A1-209ENST00000489861 CARMIL2Q6F5E8 1435 aa13.44□□□□□ -0.26
COL9A1-209ENST00000489861 MADDQ8WXG6 1647 aa13.43□□□□□ -0.26
COL9A1-209ENST00000489861 BCORL1Q5H9F3 1711 aa13.42□□□□□ -0.26
COL9A1-209ENST00000489861 CFAP43Q8NDM7 1665 aa13.42□□□□□ -0.26
COL9A1-209ENST00000489861 WDR7Q9Y4E6 1490 aa13.42□□□□□ -0.26
COL9A1-209ENST00000489861 CD109Q6YHK3 1445 aa13.41□□□□□ -0.26
COL9A1-209ENST00000489861 IGF1RP08069 1367 aa13.4□□□□□ -0.26
COL9A1-209ENST00000489861 DISP1Q96F81 1524 aa13.39□□□□□ -0.27
COL9A1-209ENST00000489861 RIMS1Q86UR5 1692 aaKnown RBP13.37□□□□□ -0.27
COL9A1-209ENST00000489861 ARAP3Q8WWN8 1544 aa13.37□□□□□ -0.27
COL9A1-209ENST00000489861 IQGAP2Q13576 1575 aa13.36□□□□□ -0.27
COL9A1-209ENST00000489861 KCNH8Q96L42 1107 aa13.34□□□□□ -0.27
COL9A1-209ENST00000489861 RAPGEF3O95398 923 aa13.29□□□□□ -0.28
COL9A1-209ENST00000489861 ARID4BQ4LE39 1312 aaPredicted RBP13.29□□□□□ -0.28
COL9A1-209ENST00000489861 PLPPR3Q6T4P5 718 aa13.28□□□□□ -0.28
COL9A1-209ENST00000489861 STRCQ7RTU9 1775 aa13.27□□□□□ -0.29
COL9A1-209ENST00000489861 KIAA0556O60303 1618 aa13.26□□□□□ -0.29
COL9A1-209ENST00000489861 FRMPD1Q5SYB0 1578 aa13.26□□□□□ -0.29
COL9A1-209ENST00000489861 CARMIL1Q5VZK9 1371 aa13.26□□□□□ -0.29
COL9A1-209ENST00000489861 UGGT2Q9NYU1 1516 aa13.24□□□□□ -0.29
COL9A1-209ENST00000489861 KIF27Q86VH2 1401 aa13.24□□□□□ -0.29
COL9A1-209ENST00000489861 SIGLEC1Q9BZZ2 1709 aa13.22□□□□□ -0.29
COL9A1-209ENST00000489861 ABCA8O94911 1581 aa13.2□□□□□ -0.3
COL9A1-209ENST00000489861 PHLDB1Q86UU1 1377 aa13.2□□□□□ -0.3
COL9A1-209ENST00000489861 ARHGEF40Q8TER5 1519 aa13.19□□□□□ -0.3
COL9A1-209ENST00000489861 YEATS2Q9ULM3 1422 aa13.19□□□□□ -0.3
COL9A1-209ENST00000489861 ABCA9Q8IUA7 1624 aa13.18□□□□□ -0.3
COL9A1-209ENST00000489861 PREX1Q8TCU6 1659 aa13.18□□□□□ -0.3
COL9A1-209ENST00000489861 FER1L4A9Z1Z3 1794 aa13.17□□□□□ -0.3
COL9A1-209ENST00000489861 LTBP4Q8N2S1 1624 aa13.17□□□□□ -0.3
COL9A1-209ENST00000489861 TTC37Q6PGP7 1564 aa13.15□□□□□ -0.3
COL9A1-209ENST00000489861 DMRT2Q9Y5R5 561 aa13.15□□□□□ -0.3
COL9A1-209ENST00000489861 NEO1Q92859 1461 aa13.15□□□□□ -0.3
COL9A1-209ENST00000489861 RICTORQ6R327 1708 aa13.14□□□□□ -0.31
COL9A1-209ENST00000489861 FANCAO15360 1455 aa13.11□□□□□ -0.31
COL9A1-209ENST00000489861 SETD1BQ9UPS6 1966 aaKnown RBP13.11□□□□□ -0.31
COL9A1-209ENST00000489861 POGZQ7Z3K3 1410 aa13.11□□□□□ -0.31
COL9A1-209ENST00000489861 IQSEC2Q5JU85 1478 aa13.1□□□□□ -0.31
COL9A1-209ENST00000489861 ARID3CA6NKF2 412 aa13.1□□□□□ -0.31
COL9A1-209ENST00000489861 MLECQ14165 292 aa13.1□□□□□ -0.31
COL9A1-209ENST00000489861 PTPRTO14522 1441 aa13.09□□□□□ -0.31
COL9A1-209ENST00000489861 CEBPAP49715 358 aaPredicted RBP13.09□□□□□ -0.31
COL9A1-209ENST00000489861 ATP10BO94823 1461 aa13.09□□□□□ -0.31
COL9A1-209ENST00000489861 SUPT5HO00267 1087 aaKnown RBP13.08□□□□□ -0.32
COL9A1-209ENST00000489861 MED1Q15648 1581 aaPredicted RBP13.07□□□□□ -0.32
COL9A1-209ENST00000489861 AKNAQ7Z591 1439 aa13.06□□□□□ -0.32
COL9A1-209ENST00000489861 FHOD3Q2V2M9 1422 aa13.05□□□□□ -0.32
COL9A1-209ENST00000489861 DENND4BO75064 1496 aaPredicted RBP13.05□□□□□ -0.32
COL9A1-209ENST00000489861 RAPGEF2Q9Y4G8 1499 aa13.04□□□□□ -0.32
COL9A1-209ENST00000489861 ARHGEF12Q9NZN5 1544 aa13.04□□□□□ -0.32
COL9A1-209ENST00000489861 CTTNBP2Q8WZ74 1663 aa13.04□□□□□ -0.32
COL9A1-209ENST00000489861 ZMYM4Q5VZL5 1548 aa13.03□□□□□ -0.32
COL9A1-209ENST00000489861 ZFYVE16Q7Z3T8 1539 aa13.03□□□□□ -0.32
COL9A1-209ENST00000489861 UBAP1LF5GYI3 381 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms