RNA–Protein interactions for RNA: ENST00000489442.5

CCL28-202, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best)

Gene CCL28, Length 1,342 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-202ENST00000489442 SHROOM2Q13796 1616 aa22.54■■□□□ 1.2
CCL28-202ENST00000489442 ERCC6L2Q5T890 1561 aa22.5■■□□□ 1.19
CCL28-202ENST00000489442 CHIC1Q5VXU3 224 aa22.5■■□□□ 1.19
CCL28-202ENST00000489442 KIAA0586Q9BVV6 1533 aa22.49■■□□□ 1.19
CCL28-202ENST00000489442 PRG4Q92954 1404 aaPredicted RBP22.49■■□□□ 1.19
CCL28-202ENST00000489442 RAPGEF2Q9Y4G8 1499 aa22.47■■□□□ 1.19
CCL28-202ENST00000489442 IQGAP2Q13576 1575 aa22.36■■□□□ 1.17
CCL28-202ENST00000489442 CSRNP3Q8WYN3 585 aa22.36■■□□□ 1.17
CCL28-202ENST00000489442 EEA1Q15075 1411 aa22.33■■□□□ 1.17
CCL28-202ENST00000489442 PRXQ9BXM0 1461 aa22.33■■□□□ 1.16
CCL28-202ENST00000489442 TRHP20396 242 aaPredicted RBP22.32■■□□□ 1.16
CCL28-202ENST00000489442 FAM9AQ8IZU1 332 aaPredicted RBP22.32■■□□□ 1.16
CCL28-202ENST00000489442 CARMIL2Q6F5E8 1435 aa22.31■■□□□ 1.16
CCL28-202ENST00000489442 CTTNBP2Q8WZ74 1663 aa22.29■■□□□ 1.16
CCL28-202ENST00000489442 TTBK1Q5TCY1 1321 aaPredicted RBP22.27■■□□□ 1.16
CCL28-202ENST00000489442 PTPRGP23470 1445 aa22.22■■□□□ 1.15
CCL28-202ENST00000489442 NPM1P06748 294 aaKnown RBP eCLIP22.21■■□□□ 1.15
CCL28-202ENST00000489442 TNIKQ9UKE5 1360 aa22.21■■□□□ 1.15
CCL28-202ENST00000489442 UGGT2Q9NYU1 1516 aa22.2■■□□□ 1.15
CCL28-202ENST00000489442 DISP1Q96F81 1524 aa22.18■■□□□ 1.14
CCL28-202ENST00000489442 GOLGA3Q08378 1498 aa22.13■■□□□ 1.13
CCL28-202ENST00000489442 KIAA0556O60303 1618 aa22.13■■□□□ 1.13
CCL28-202ENST00000489442 ADCY10Q96PN6 1610 aa22.13■■□□□ 1.13
CCL28-202ENST00000489442 KIF21BO75037 1637 aa22.09■■□□□ 1.13
CCL28-202ENST00000489442 EHMT2Q96KQ7 1210 aa22.08■■□□□ 1.13
CCL28-202ENST00000489442 RANGAP1P46060 587 aaPredicted RBP22.06■■□□□ 1.12
CCL28-202ENST00000489442 UACAQ9BZF9 1416 aa22.05■■□□□ 1.12
CCL28-202ENST00000489442 UBTFP17480 764 aaKnown RBP22.03■■□□□ 1.12
CCL28-202ENST00000489442 P3H3Q8IVL6 736 aa22.03■■□□□ 1.12
CCL28-202ENST00000489442 UHRF1BP1LA0JNW5 1464 aa22■■□□□ 1.11
CCL28-202ENST00000489442 MAPKBP1O60336 1514 aa22■■□□□ 1.11
CCL28-202ENST00000489442 ABCC2Q92887 1545 aa22■■□□□ 1.11
CCL28-202ENST00000489442 KIF13AQ9H1H9 1805 aa21.96■■□□□ 1.11
CCL28-202ENST00000489442 FAM69CQ0P6D2 419 aa21.96■■□□□ 1.11
CCL28-202ENST00000489442 SAMD9Q5K651 1589 aa21.94■■□□□ 1.1
CCL28-202ENST00000489442 PLB1Q6P1J6 1458 aa21.93■■□□□ 1.1
CCL28-202ENST00000489442 ABCC10Q5T3U5 1492 aa21.93■■□□□ 1.1
CCL28-202ENST00000489442 KDM5BQ9UGL1 1544 aa21.89■■□□□ 1.09
CCL28-202ENST00000489442 ZCCHC11Q5TAX3 1644 aaKnown RBP21.89■■□□□ 1.09
CCL28-202ENST00000489442 ASXL2Q76L83 1435 aa21.89■■□□□ 1.09
CCL28-202ENST00000489442 ABCA8O94911 1581 aa21.88■■□□□ 1.09
CCL28-202ENST00000489442 DIP2BQ9P265 1576 aa21.88■■□□□ 1.09
CCL28-202ENST00000489442 EFCAB5A4FU69 1503 aa21.85■■□□□ 1.09
CCL28-202ENST00000489442 FHOD3Q2V2M9 1422 aa21.84■■□□□ 1.09
CCL28-202ENST00000489442 TSPOAP1O95153 1857 aa21.82■■□□□ 1.08
CCL28-202ENST00000489442 ARID3CA6NKF2 412 aa21.81■■□□□ 1.08
CCL28-202ENST00000489442 RAPGEF6Q8TEU7 1601 aa21.79■■□□□ 1.08
CCL28-202ENST00000489442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.77■■□□□ 1.07
CCL28-202ENST00000489442 HNRNPUL2Q1KMD3 747 aaKnown RBP21.77■■□□□ 1.07
CCL28-202ENST00000489442 WDR7Q9Y4E6 1490 aa21.75■■□□□ 1.07
CCL28-202ENST00000489442 EPRSP07814 1512 aaKnown RBP21.74■■□□□ 1.07
CCL28-202ENST00000489442 KCNH8Q96L42 1107 aa21.74■■□□□ 1.07
CCL28-202ENST00000489442 GLI2P10070 1586 aa21.73■■□□□ 1.07
CCL28-202ENST00000489442 ATP10BO94823 1461 aa21.73■■□□□ 1.07
CCL28-202ENST00000489442 ARHGAP35Q9NRY4 1499 aa21.71■■□□□ 1.07
CCL28-202ENST00000489442 ATP1B4Q9UN42 357 aaPredicted RBP21.69■■□□□ 1.06
CCL28-202ENST00000489442 FMN1Q68DA7 1419 aa21.68■■□□□ 1.06
CCL28-202ENST00000489442 NUP153P49790 1475 aaKnown RBP21.68■■□□□ 1.06
CCL28-202ENST00000489442 MAP3K4Q9Y6R4 1608 aa21.64■■□□□ 1.05
CCL28-202ENST00000489442 PLEKHD1A6NEE1 506 aa21.61■■□□□ 1.05
CCL28-202ENST00000489442 KDM6BO15054 1643 aa21.61■■□□□ 1.05
CCL28-202ENST00000489442 PPRC1Q5VV67 1664 aaKnown RBP21.61■■□□□ 1.05
CCL28-202ENST00000489442 CFAP43Q8NDM7 1665 aa21.6■■□□□ 1.05
CCL28-202ENST00000489442 CLIP1P30622 1438 aa21.59■■□□□ 1.05
CCL28-202ENST00000489442 CD109Q6YHK3 1445 aa21.59■■□□□ 1.05
CCL28-202ENST00000489442 TEX14Q8IWB6 1497 aa21.59■■□□□ 1.05
CCL28-202ENST00000489442 HECW1Q76N89 1606 aa21.58■■□□□ 1.04
CCL28-202ENST00000489442 CDK13Q14004 1512 aaKnown RBP21.54■■□□□ 1.04
CCL28-202ENST00000489442 LOC105371045A0A1W2PR82 267 aa21.52■■□□□ 1.03
CCL28-202ENST00000489442 CDK11AQ9UQ88 783 aaPredicted RBP21.52■■□□□ 1.03
CCL28-202ENST00000489442 ABCA9Q8IUA7 1624 aa21.51■■□□□ 1.03
CCL28-202ENST00000489442 MAGI3Q5TCQ9 1506 aa21.5■■□□□ 1.03
CCL28-202ENST00000489442 CEP162Q5TB80 1403 aa21.46■■□□□ 1.03
CCL28-202ENST00000489442 CASKIN1Q8WXD9 1431 aa21.46■■□□□ 1.03
CCL28-202ENST00000489442 PCF11O94913 1555 aaKnown RBP21.46■■□□□ 1.03
CCL28-202ENST00000489442 LRRIQ1Q96JM4 1722 aa21.44■■□□□ 1.02
CCL28-202ENST00000489442 FYCO1Q9BQS8 1478 aa21.42■■□□□ 1.02
CCL28-202ENST00000489442 CCDC18Q5T9S5 1454 aa21.41■■□□□ 1.02
CCL28-202ENST00000489442 COL17A1Q9UMD9 1497 aaPredicted RBP21.41■■□□□ 1.02
CCL28-202ENST00000489442 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.39■■□□□ 1.02
CCL28-202ENST00000489442 PHLDB1Q86UU1 1377 aa21.37■■□□□ 1.01
CCL28-202ENST00000489442 TROQ12816 1431 aaPredicted RBP21.36■■□□□ 1.01
CCL28-202ENST00000489442 TTC37Q6PGP7 1564 aa21.36■■□□□ 1.01
CCL28-202ENST00000489442 KIF14Q15058 1648 aa21.34■■□□□ 1.01
CCL28-202ENST00000489442 NEO1Q92859 1461 aa21.34■■□□□ 1.01
CCL28-202ENST00000489442 ARAP3Q8WWN8 1544 aa21.33■■□□□ 1
CCL28-202ENST00000489442 CFAP74Q9C0B2 1584 aa21.31■■□□□ 1
CCL28-202ENST00000489442 FANCAO15360 1455 aa21.31■■□□□ 1
CCL28-202ENST00000489442 MYO5CQ9NQX4 1742 aa21.31■■□□□ 1
CCL28-202ENST00000489442 PLCH2O75038 1416 aa21.28■■□□□ 1
CCL28-202ENST00000489442 AKNAQ7Z591 1439 aa21.27■■□□□ 1
CCL28-202ENST00000489442 RAPGEF3O95398 923 aa21.27■□□□□ 0.99
CCL28-202ENST00000489442 EFCAB2Q5VUJ9 269 aa21.26■□□□□ 0.99
CCL28-202ENST00000489442 MTUS2Q5JR59 1369 aa21.23■□□□□ 0.99
CCL28-202ENST00000489442 DENND4BO75064 1496 aaPredicted RBP21.22■□□□□ 0.99
CCL28-202ENST00000489442 ARHGAP5Q13017 1502 aa21.22■□□□□ 0.99
CCL28-202ENST00000489442 VPS8Q8N3P4 1428 aa21.2■□□□□ 0.98
CCL28-202ENST00000489442 ADGRL1O94910 1474 aa21.19■□□□□ 0.98
CCL28-202ENST00000489442 CDC42BPBQ9Y5S2 1711 aa21.17■□□□□ 0.98
CCL28-202ENST00000489442 SCAPERQ9BY12 1400 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms