RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 PRG4Q92954 1404 aaPredicted RBP23.68■■□□□ 1.38
SYNE1-226ENST00000488376 JPH4Q96JJ6 628 aa23.68■■□□□ 1.38
SYNE1-226ENST00000488376 KIAA0586Q9BVV6 1533 aa23.65■■□□□ 1.38
SYNE1-226ENST00000488376 RAPGEF2Q9Y4G8 1499 aa23.6■■□□□ 1.37
SYNE1-226ENST00000488376 PRXQ9BXM0 1461 aa23.51■■□□□ 1.35
SYNE1-226ENST00000488376 IQGAP2Q13576 1575 aa23.5■■□□□ 1.35
SYNE1-226ENST00000488376 CHIC1Q5VXU3 224 aa23.49■■□□□ 1.35
SYNE1-226ENST00000488376 TRHP20396 242 aaPredicted RBP23.44■■□□□ 1.34
SYNE1-226ENST00000488376 CSRNP3Q8WYN3 585 aa23.42■■□□□ 1.34
SYNE1-226ENST00000488376 FAM9AQ8IZU1 332 aaPredicted RBP23.41■■□□□ 1.34
SYNE1-226ENST00000488376 DISP1Q96F81 1524 aa23.4■■□□□ 1.34
SYNE1-226ENST00000488376 TTBK1Q5TCY1 1321 aaPredicted RBP23.39■■□□□ 1.34
SYNE1-226ENST00000488376 UGGT2Q9NYU1 1516 aa23.38■■□□□ 1.33
SYNE1-226ENST00000488376 ADCY10Q96PN6 1610 aa23.36■■□□□ 1.33
SYNE1-226ENST00000488376 CARMIL2Q6F5E8 1435 aa23.35■■□□□ 1.33
SYNE1-226ENST00000488376 CTTNBP2Q8WZ74 1663 aa23.35■■□□□ 1.33
SYNE1-226ENST00000488376 PTPRGP23470 1445 aa23.34■■□□□ 1.33
SYNE1-226ENST00000488376 EEA1Q15075 1411 aa23.34■■□□□ 1.33
SYNE1-226ENST00000488376 TNIKQ9UKE5 1360 aa23.34■■□□□ 1.33
SYNE1-226ENST00000488376 KIAA0556O60303 1618 aa23.3■■□□□ 1.32
SYNE1-226ENST00000488376 UACAQ9BZF9 1416 aa23.18■■□□□ 1.3
SYNE1-226ENST00000488376 NPM1P06748 294 aaKnown RBP eCLIP23.18■■□□□ 1.3
SYNE1-226ENST00000488376 EHMT2Q96KQ7 1210 aa23.18■■□□□ 1.3
SYNE1-226ENST00000488376 KIF21BO75037 1637 aa23.18■■□□□ 1.3
SYNE1-226ENST00000488376 MAPKBP1O60336 1514 aa23.18■■□□□ 1.3
SYNE1-226ENST00000488376 GOLGA3Q08378 1498 aa23.17■■□□□ 1.3
SYNE1-226ENST00000488376 ABCC2Q92887 1545 aa23.17■■□□□ 1.3
SYNE1-226ENST00000488376 UHRF1BP1LA0JNW5 1464 aa23.16■■□□□ 1.3
SYNE1-226ENST00000488376 P3H3Q8IVL6 736 aa23.15■■□□□ 1.3
SYNE1-226ENST00000488376 PLB1Q6P1J6 1458 aa23.14■■□□□ 1.29
SYNE1-226ENST00000488376 RANGAP1P46060 587 aaPredicted RBP23.12■■□□□ 1.29
SYNE1-226ENST00000488376 KIF13AQ9H1H9 1805 aa23.12■■□□□ 1.29
SYNE1-226ENST00000488376 ABCC10Q5T3U5 1492 aa23.11■■□□□ 1.29
SYNE1-226ENST00000488376 SAMD9Q5K651 1589 aa23.1■■□□□ 1.29
SYNE1-226ENST00000488376 DIP2BQ9P265 1576 aa23.09■■□□□ 1.29
SYNE1-226ENST00000488376 FAM69CQ0P6D2 419 aa23.08■■□□□ 1.29
SYNE1-226ENST00000488376 KDM5BQ9UGL1 1544 aa23.07■■□□□ 1.28
SYNE1-226ENST00000488376 ABCA8O94911 1581 aa23.06■■□□□ 1.28
SYNE1-226ENST00000488376 ASXL2Q76L83 1435 aa23.06■■□□□ 1.28
SYNE1-226ENST00000488376 ZCCHC11Q5TAX3 1644 aaKnown RBP23.03■■□□□ 1.28
SYNE1-226ENST00000488376 FHOD3Q2V2M9 1422 aa23■■□□□ 1.27
SYNE1-226ENST00000488376 UBTFP17480 764 aaKnown RBP22.99■■□□□ 1.27
SYNE1-226ENST00000488376 ARID3CA6NKF2 412 aa22.97■■□□□ 1.27
SYNE1-226ENST00000488376 EPRSP07814 1512 aaKnown RBP22.92■■□□□ 1.26
SYNE1-226ENST00000488376 EFCAB5A4FU69 1503 aa22.91■■□□□ 1.26
SYNE1-226ENST00000488376 ATP10BO94823 1461 aa22.89■■□□□ 1.25
SYNE1-226ENST00000488376 WDR7Q9Y4E6 1490 aa22.89■■□□□ 1.25
SYNE1-226ENST00000488376 RAPGEF6Q8TEU7 1601 aa22.89■■□□□ 1.25
SYNE1-226ENST00000488376 GLI2P10070 1586 aa22.89■■□□□ 1.25
SYNE1-226ENST00000488376 ARHGAP35Q9NRY4 1499 aa22.86■■□□□ 1.25
SYNE1-226ENST00000488376 TSPOAP1O95153 1857 aa22.86■■□□□ 1.25
SYNE1-226ENST00000488376 NUP153P49790 1475 aaKnown RBP22.85■■□□□ 1.25
SYNE1-226ENST00000488376 PPRC1Q5VV67 1664 aaKnown RBP22.83■■□□□ 1.24
SYNE1-226ENST00000488376 KCNH8Q96L42 1107 aa22.81■■□□□ 1.24
SYNE1-226ENST00000488376 MAP3K4Q9Y6R4 1608 aa22.8■■□□□ 1.24
SYNE1-226ENST00000488376 KDM6BO15054 1643 aa22.73■■□□□ 1.23
SYNE1-226ENST00000488376 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.73■■□□□ 1.23
SYNE1-226ENST00000488376 HNRNPUL2Q1KMD3 747 aaKnown RBP22.73■■□□□ 1.23
SYNE1-226ENST00000488376 CDK13Q14004 1512 aaKnown RBP22.71■■□□□ 1.23
SYNE1-226ENST00000488376 COL17A1Q9UMD9 1497 aaPredicted RBP22.69■■□□□ 1.22
SYNE1-226ENST00000488376 FMN1Q68DA7 1419 aa22.69■■□□□ 1.22
SYNE1-226ENST00000488376 CD109Q6YHK3 1445 aa22.69■■□□□ 1.22
SYNE1-226ENST00000488376 CFAP43Q8NDM7 1665 aa22.66■■□□□ 1.22
SYNE1-226ENST00000488376 ATP1B4Q9UN42 357 aaPredicted RBP22.65■■□□□ 1.22
SYNE1-226ENST00000488376 TEX14Q8IWB6 1497 aa22.64■■□□□ 1.21
SYNE1-226ENST00000488376 CLIP1P30622 1438 aa22.64■■□□□ 1.21
SYNE1-226ENST00000488376 MAGI3Q5TCQ9 1506 aa22.63■■□□□ 1.21
SYNE1-226ENST00000488376 HECW1Q76N89 1606 aa22.62■■□□□ 1.21
SYNE1-226ENST00000488376 ABCA9Q8IUA7 1624 aa22.62■■□□□ 1.21
SYNE1-226ENST00000488376 PCF11O94913 1555 aaKnown RBP22.59■■□□□ 1.21
SYNE1-226ENST00000488376 PLEKHD1A6NEE1 506 aa22.59■■□□□ 1.21
SYNE1-226ENST00000488376 LOC105371045A0A1W2PR82 267 aa22.58■■□□□ 1.21
SYNE1-226ENST00000488376 LRRIQ1Q96JM4 1722 aa22.57■■□□□ 1.2
SYNE1-226ENST00000488376 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.54■■□□□ 1.2
SYNE1-226ENST00000488376 CASKIN1Q8WXD9 1431 aa22.54■■□□□ 1.2
SYNE1-226ENST00000488376 CEP162Q5TB80 1403 aa22.53■■□□□ 1.2
SYNE1-226ENST00000488376 TTC37Q6PGP7 1564 aa22.53■■□□□ 1.2
SYNE1-226ENST00000488376 FYCO1Q9BQS8 1478 aa22.47■■□□□ 1.19
SYNE1-226ENST00000488376 KIF14Q15058 1648 aa22.46■■□□□ 1.19
SYNE1-226ENST00000488376 ARAP3Q8WWN8 1544 aa22.45■■□□□ 1.18
SYNE1-226ENST00000488376 TROQ12816 1431 aaPredicted RBP22.44■■□□□ 1.18
SYNE1-226ENST00000488376 CCDC18Q5T9S5 1454 aa22.42■■□□□ 1.18
SYNE1-226ENST00000488376 NEO1Q92859 1461 aa22.42■■□□□ 1.18
SYNE1-226ENST00000488376 CDK11AQ9UQ88 783 aaPredicted RBP22.41■■□□□ 1.18
SYNE1-226ENST00000488376 RAPGEF3O95398 923 aa22.4■■□□□ 1.18
SYNE1-226ENST00000488376 FANCAO15360 1455 aa22.4■■□□□ 1.18
SYNE1-226ENST00000488376 FRMPD1Q5SYB0 1578 aa22.38■■□□□ 1.17
SYNE1-226ENST00000488376 PHLDB1Q86UU1 1377 aa22.38■■□□□ 1.17
SYNE1-226ENST00000488376 PLCH2O75038 1416 aa22.37■■□□□ 1.17
SYNE1-226ENST00000488376 AKNAQ7Z591 1439 aa22.37■■□□□ 1.17
SYNE1-226ENST00000488376 KDM4FA0A1W2PPD8 638 aa22.36■■□□□ 1.17
SYNE1-226ENST00000488376 AEBP2Q6ZN18 517 aaPredicted RBP22.32■■□□□ 1.16
SYNE1-226ENST00000488376 CFAP74Q9C0B2 1584 aa22.3■■□□□ 1.16
SYNE1-226ENST00000488376 MYO5CQ9NQX4 1742 aa22.3■■□□□ 1.16
SYNE1-226ENST00000488376 DENND4BO75064 1496 aaPredicted RBP22.29■■□□□ 1.16
SYNE1-226ENST00000488376 ADGRL1O94910 1474 aa22.28■■□□□ 1.16
SYNE1-226ENST00000488376 RICTORQ6R327 1708 aa22.27■■□□□ 1.16
SYNE1-226ENST00000488376 ARHGAP5Q13017 1502 aa22.26■■□□□ 1.15
SYNE1-226ENST00000488376 SCAPERQ9BY12 1400 aa22.26■■□□□ 1.15
SYNE1-226ENST00000488376 EFCAB2Q5VUJ9 269 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms