RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 RUSC2Q8N2Y8 1516 aa21.33■■□□□ 1
SDC3-204ENST00000487984 CUL7Q14999 1698 aa21.29■■□□□ 1
SDC3-204ENST00000487984 KIAA0586Q9BVV6 1533 aa21.25■□□□□ 0.99
SDC3-204ENST00000487984 CARMIL1Q5VZK9 1371 aa21.24■□□□□ 0.99
SDC3-204ENST00000487984 ADCY10Q96PN6 1610 aa21.06■□□□□ 0.96
SDC3-204ENST00000487984 RAPGEF2Q9Y4G8 1499 aa21.06■□□□□ 0.96
SDC3-204ENST00000487984 IQGAP2Q13576 1575 aa21.05■□□□□ 0.96
SDC3-204ENST00000487984 NPM1P06748 294 aaKnown RBP eCLIP21.04■□□□□ 0.96
SDC3-204ENST00000487984 PTPRGP23470 1445 aa21.03■□□□□ 0.96
SDC3-204ENST00000487984 CARMIL2Q6F5E8 1435 aa21.03■□□□□ 0.96
SDC3-204ENST00000487984 TNIKQ9UKE5 1360 aa21.01■□□□□ 0.95
SDC3-204ENST00000487984 MAPKBP1O60336 1514 aa21■□□□□ 0.95
SDC3-204ENST00000487984 TTBK1Q5TCY1 1321 aaPredicted RBP20.99■□□□□ 0.95
SDC3-204ENST00000487984 ABCC10Q5T3U5 1492 aa20.98■□□□□ 0.95
SDC3-204ENST00000487984 KIF13AQ9H1H9 1805 aa20.97■□□□□ 0.95
SDC3-204ENST00000487984 DISP1Q96F81 1524 aa20.97■□□□□ 0.95
SDC3-204ENST00000487984 FAM69CQ0P6D2 419 aa20.96■□□□□ 0.95
SDC3-204ENST00000487984 UGGT2Q9NYU1 1516 aa20.94■□□□□ 0.94
SDC3-204ENST00000487984 DIP2BQ9P265 1576 aa20.91■□□□□ 0.94
SDC3-204ENST00000487984 PRXQ9BXM0 1461 aa20.9■□□□□ 0.94
SDC3-204ENST00000487984 ABCC2Q92887 1545 aa20.89■□□□□ 0.94
SDC3-204ENST00000487984 UHRF1BP1LA0JNW5 1464 aa20.88■□□□□ 0.93
SDC3-204ENST00000487984 UACAQ9BZF9 1416 aa20.87■□□□□ 0.93
SDC3-204ENST00000487984 KIAA0556O60303 1618 aa20.86■□□□□ 0.93
SDC3-204ENST00000487984 ASXL2Q76L83 1435 aa20.81■□□□□ 0.92
SDC3-204ENST00000487984 CTTNBP2Q8WZ74 1663 aa20.81■□□□□ 0.92
SDC3-204ENST00000487984 PLB1Q6P1J6 1458 aa20.79■□□□□ 0.92
SDC3-204ENST00000487984 KDM5BQ9UGL1 1544 aa20.78■□□□□ 0.92
SDC3-204ENST00000487984 GOLGA3Q08378 1498 aa20.77■□□□□ 0.92
SDC3-204ENST00000487984 CSRNP3Q8WYN3 585 aa20.77■□□□□ 0.92
SDC3-204ENST00000487984 GLI2P10070 1586 aa20.71■□□□□ 0.91
SDC3-204ENST00000487984 ZCCHC11Q5TAX3 1644 aaKnown RBP20.71■□□□□ 0.91
SDC3-204ENST00000487984 AEBP2Q6ZN18 517 aaPredicted RBP20.7■□□□□ 0.9
SDC3-204ENST00000487984 TSPOAP1O95153 1857 aa20.7■□□□□ 0.9
SDC3-204ENST00000487984 EEA1Q15075 1411 aa20.7■□□□□ 0.9
SDC3-204ENST00000487984 EPRSP07814 1512 aaKnown RBP20.68■□□□□ 0.9
SDC3-204ENST00000487984 KDM6BO15054 1643 aa20.67■□□□□ 0.9
SDC3-204ENST00000487984 ABCA8O94911 1581 aa20.67■□□□□ 0.9
SDC3-204ENST00000487984 WDR7Q9Y4E6 1490 aa20.63■□□□□ 0.89
SDC3-204ENST00000487984 P3H3Q8IVL6 736 aa20.63■□□□□ 0.89
SDC3-204ENST00000487984 PPRC1Q5VV67 1664 aaKnown RBP20.63■□□□□ 0.89
SDC3-204ENST00000487984 FAM9AQ8IZU1 332 aaPredicted RBP20.62■□□□□ 0.89
SDC3-204ENST00000487984 MAP3K4Q9Y6R4 1608 aa20.59■□□□□ 0.89
SDC3-204ENST00000487984 SAMD9Q5K651 1589 aa20.58■□□□□ 0.88
SDC3-204ENST00000487984 TEX14Q8IWB6 1497 aa20.54■□□□□ 0.88
SDC3-204ENST00000487984 ARID3CA6NKF2 412 aa20.53■□□□□ 0.88
SDC3-204ENST00000487984 CHIC1Q5VXU3 224 aa20.53■□□□□ 0.88
SDC3-204ENST00000487984 COL17A1Q9UMD9 1497 aaPredicted RBP20.52■□□□□ 0.88
SDC3-204ENST00000487984 RANGAP1P46060 587 aaPredicted RBP20.52■□□□□ 0.88
SDC3-204ENST00000487984 KCNH8Q96L42 1107 aa20.52■□□□□ 0.88
SDC3-204ENST00000487984 ATP10BO94823 1461 aa20.5■□□□□ 0.87
SDC3-204ENST00000487984 KIF21BO75037 1637 aa20.5■□□□□ 0.87
SDC3-204ENST00000487984 CD109Q6YHK3 1445 aa20.49■□□□□ 0.87
SDC3-204ENST00000487984 FHOD3Q2V2M9 1422 aa20.48■□□□□ 0.87
SDC3-204ENST00000487984 MAGI3Q5TCQ9 1506 aa20.46■□□□□ 0.87
SDC3-204ENST00000487984 RAPGEF6Q8TEU7 1601 aa20.45■□□□□ 0.87
SDC3-204ENST00000487984 CFAP43Q8NDM7 1665 aa20.45■□□□□ 0.86
SDC3-204ENST00000487984 KDM4FA0A1W2PPD8 638 aa20.44■□□□□ 0.86
SDC3-204ENST00000487984 NUP153P49790 1475 aaKnown RBP20.43■□□□□ 0.86
SDC3-204ENST00000487984 EHMT2Q96KQ7 1210 aa20.41■□□□□ 0.86
SDC3-204ENST00000487984 EFCAB5A4FU69 1503 aa20.41■□□□□ 0.86
SDC3-204ENST00000487984 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.38■□□□□ 0.85
SDC3-204ENST00000487984 HNRNPUL2Q1KMD3 747 aaKnown RBP20.38■□□□□ 0.85
SDC3-204ENST00000487984 UBTFP17480 764 aaKnown RBP20.37■□□□□ 0.85
SDC3-204ENST00000487984 ABCA9Q8IUA7 1624 aa20.34■□□□□ 0.85
SDC3-204ENST00000487984 ADGRL1O94910 1474 aa20.31■□□□□ 0.84
SDC3-204ENST00000487984 ARAP3Q8WWN8 1544 aa20.29■□□□□ 0.84
SDC3-204ENST00000487984 PLEKHD1A6NEE1 506 aa20.28■□□□□ 0.84
SDC3-204ENST00000487984 ARHGAP35Q9NRY4 1499 aa20.27■□□□□ 0.84
SDC3-204ENST00000487984 PHLDB1Q86UU1 1377 aa20.26■□□□□ 0.83
SDC3-204ENST00000487984 NEO1Q92859 1461 aa20.24■□□□□ 0.83
SDC3-204ENST00000487984 CDK13Q14004 1512 aaKnown RBP20.23■□□□□ 0.83
SDC3-204ENST00000487984 FMN1Q68DA7 1419 aa20.23■□□□□ 0.83
SDC3-204ENST00000487984 RAPGEF3O95398 923 aa20.2■□□□□ 0.82
SDC3-204ENST00000487984 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.19■□□□□ 0.82
SDC3-204ENST00000487984 ATP1B4Q9UN42 357 aaPredicted RBP20.18■□□□□ 0.82
SDC3-204ENST00000487984 HECW1Q76N89 1606 aa20.17■□□□□ 0.82
SDC3-204ENST00000487984 TTC37Q6PGP7 1564 aa20.16■□□□□ 0.82
SDC3-204ENST00000487984 FRMPD1Q5SYB0 1578 aa20.14■□□□□ 0.81
SDC3-204ENST00000487984 FANCAO15360 1455 aa20.13■□□□□ 0.81
SDC3-204ENST00000487984 AKNAQ7Z591 1439 aa20.13■□□□□ 0.81
SDC3-204ENST00000487984 DENND4BO75064 1496 aaPredicted RBP20.1■□□□□ 0.81
SDC3-204ENST00000487984 CDK11AQ9UQ88 783 aaPredicted RBP20.09■□□□□ 0.81
SDC3-204ENST00000487984 CFAP74Q9C0B2 1584 aa20.08■□□□□ 0.81
SDC3-204ENST00000487984 PLCH2O75038 1416 aa20.07■□□□□ 0.8
SDC3-204ENST00000487984 TROQ12816 1431 aaPredicted RBP20.05■□□□□ 0.8
SDC3-204ENST00000487984 CASKIN1Q8WXD9 1431 aa20.04■□□□□ 0.8
SDC3-204ENST00000487984 RICTORQ6R327 1708 aa20.04■□□□□ 0.8
SDC3-204ENST00000487984 PCF11O94913 1555 aaKnown RBP20.03■□□□□ 0.8
SDC3-204ENST00000487984 ARHGEF40Q8TER5 1519 aa20.02■□□□□ 0.8
SDC3-204ENST00000487984 KIF14Q15058 1648 aa20.02■□□□□ 0.8
SDC3-204ENST00000487984 LRRIQ1Q96JM4 1722 aa20.02■□□□□ 0.79
SDC3-204ENST00000487984 CLIP1P30622 1438 aa20.02■□□□□ 0.79
SDC3-204ENST00000487984 ZMYM4Q5VZL5 1548 aa20■□□□□ 0.79
SDC3-204ENST00000487984 SCAPERQ9BY12 1400 aa20■□□□□ 0.79
SDC3-204ENST00000487984 ARID4BQ4LE39 1312 aaPredicted RBP20■□□□□ 0.79
SDC3-204ENST00000487984 EFCAB2Q5VUJ9 269 aa19.99■□□□□ 0.79
SDC3-204ENST00000487984 POGZQ7Z3K3 1410 aa19.99■□□□□ 0.79
SDC3-204ENST00000487984 CCDC18Q5T9S5 1454 aa19.99■□□□□ 0.79
SDC3-204ENST00000487984 ADAMTSL3P82987 1691 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms