RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 IGF1RP08069 1367 aa21.21■□□□□ 0.99
HDAC6-229ENST00000486665 PRG4Q92954 1404 aaPredicted RBP21.21■□□□□ 0.99
HDAC6-229ENST00000486665 KIF13AQ9H1H9 1805 aa21.18■□□□□ 0.98
HDAC6-229ENST00000486665 EEA1Q15075 1411 aa21.16■□□□□ 0.98
HDAC6-229ENST00000486665 CSRNP3Q8WYN3 585 aa21.16■□□□□ 0.98
HDAC6-229ENST00000486665 JPH4Q96JJ6 628 aa21.14■□□□□ 0.97
HDAC6-229ENST00000486665 AEBP2Q6ZN18 517 aaPredicted RBP21.07■□□□□ 0.96
HDAC6-229ENST00000486665 CARMIL1Q5VZK9 1371 aa21.07■□□□□ 0.96
HDAC6-229ENST00000486665 ADCY10Q96PN6 1610 aa21.04■□□□□ 0.96
HDAC6-229ENST00000486665 PRXQ9BXM0 1461 aa21.01■□□□□ 0.95
HDAC6-229ENST00000486665 CUL7Q14999 1698 aa20.99■□□□□ 0.95
HDAC6-229ENST00000486665 KIAA0586Q9BVV6 1533 aa20.99■□□□□ 0.95
HDAC6-229ENST00000486665 EHMT2Q96KQ7 1210 aa20.98■□□□□ 0.95
HDAC6-229ENST00000486665 ABCC10Q5T3U5 1492 aa20.98■□□□□ 0.95
HDAC6-229ENST00000486665 DIP2BQ9P265 1576 aa20.97■□□□□ 0.95
HDAC6-229ENST00000486665 MAPKBP1O60336 1514 aa20.97■□□□□ 0.95
HDAC6-229ENST00000486665 RAPGEF2Q9Y4G8 1499 aa20.95■□□□□ 0.94
HDAC6-229ENST00000486665 FAM69CQ0P6D2 419 aa20.94■□□□□ 0.94
HDAC6-229ENST00000486665 LOC105371045A0A1W2PR82 267 aa20.91■□□□□ 0.94
HDAC6-229ENST00000486665 KIF21BO75037 1637 aa20.89■□□□□ 0.94
HDAC6-229ENST00000486665 NPM1P06748 294 aaKnown RBP eCLIP20.88■□□□□ 0.93
HDAC6-229ENST00000486665 TSPOAP1O95153 1857 aa20.86■□□□□ 0.93
HDAC6-229ENST00000486665 GOLGA3Q08378 1498 aa20.84■□□□□ 0.93
HDAC6-229ENST00000486665 TTBK1Q5TCY1 1321 aaPredicted RBP20.82■□□□□ 0.92
HDAC6-229ENST00000486665 UBTFP17480 764 aaKnown RBP20.82■□□□□ 0.92
HDAC6-229ENST00000486665 PTPRGP23470 1445 aa20.81■□□□□ 0.92
HDAC6-229ENST00000486665 IQGAP2Q13576 1575 aa20.8■□□□□ 0.92
HDAC6-229ENST00000486665 KDM6BO15054 1643 aa20.79■□□□□ 0.92
HDAC6-229ENST00000486665 TNIKQ9UKE5 1360 aa20.76■□□□□ 0.91
HDAC6-229ENST00000486665 ABCC2Q92887 1545 aa20.75■□□□□ 0.91
HDAC6-229ENST00000486665 DISP1Q96F81 1524 aa20.75■□□□□ 0.91
HDAC6-229ENST00000486665 PPRC1Q5VV67 1664 aaKnown RBP20.73■□□□□ 0.91
HDAC6-229ENST00000486665 CARMIL2Q6F5E8 1435 aa20.73■□□□□ 0.91
HDAC6-229ENST00000486665 ASXL2Q76L83 1435 aa20.7■□□□□ 0.9
HDAC6-229ENST00000486665 UHRF1BP1LA0JNW5 1464 aa20.69■□□□□ 0.9
HDAC6-229ENST00000486665 KDM4FA0A1W2PPD8 638 aa20.68■□□□□ 0.9
HDAC6-229ENST00000486665 RANGAP1P46060 587 aaPredicted RBP20.66■□□□□ 0.9
HDAC6-229ENST00000486665 UACAQ9BZF9 1416 aa20.66■□□□□ 0.9
HDAC6-229ENST00000486665 UGGT2Q9NYU1 1516 aa20.66■□□□□ 0.9
HDAC6-229ENST00000486665 GLI2P10070 1586 aa20.66■□□□□ 0.9
HDAC6-229ENST00000486665 CTTNBP2Q8WZ74 1663 aa20.64■□□□□ 0.9
HDAC6-229ENST00000486665 PLB1Q6P1J6 1458 aa20.64■□□□□ 0.89
HDAC6-229ENST00000486665 KIAA0556O60303 1618 aa20.64■□□□□ 0.89
HDAC6-229ENST00000486665 ZCCHC11Q5TAX3 1644 aaKnown RBP20.62■□□□□ 0.89
HDAC6-229ENST00000486665 KDM5BQ9UGL1 1544 aa20.61■□□□□ 0.89
HDAC6-229ENST00000486665 EPRSP07814 1512 aaKnown RBP20.59■□□□□ 0.89
HDAC6-229ENST00000486665 COL17A1Q9UMD9 1497 aaPredicted RBP20.58■□□□□ 0.89
HDAC6-229ENST00000486665 MAP3K4Q9Y6R4 1608 aa20.58■□□□□ 0.89
HDAC6-229ENST00000486665 P3H3Q8IVL6 736 aa20.54■□□□□ 0.88
HDAC6-229ENST00000486665 CEP162Q5TB80 1403 aa20.53■□□□□ 0.88
HDAC6-229ENST00000486665 CLIP1P30622 1438 aa20.51■□□□□ 0.87
HDAC6-229ENST00000486665 ARHGAP35Q9NRY4 1499 aa20.49■□□□□ 0.87
HDAC6-229ENST00000486665 ADGRL1O94910 1474 aa20.47■□□□□ 0.87
HDAC6-229ENST00000486665 SAMD9Q5K651 1589 aa20.46■□□□□ 0.87
HDAC6-229ENST00000486665 WDR7Q9Y4E6 1490 aa20.46■□□□□ 0.87
HDAC6-229ENST00000486665 ABCA8O94911 1581 aa20.46■□□□□ 0.87
HDAC6-229ENST00000486665 EFCAB5A4FU69 1503 aa20.43■□□□□ 0.86
HDAC6-229ENST00000486665 FHOD3Q2V2M9 1422 aa20.43■□□□□ 0.86
HDAC6-229ENST00000486665 TEX14Q8IWB6 1497 aa20.43■□□□□ 0.86
HDAC6-229ENST00000486665 CFAP43Q8NDM7 1665 aa20.38■□□□□ 0.85
HDAC6-229ENST00000486665 KCNH8Q96L42 1107 aa20.35■□□□□ 0.85
HDAC6-229ENST00000486665 CD109Q6YHK3 1445 aa20.35■□□□□ 0.85
HDAC6-229ENST00000486665 MAGI3Q5TCQ9 1506 aa20.34■□□□□ 0.85
HDAC6-229ENST00000486665 ARID3CA6NKF2 412 aa20.31■□□□□ 0.84
HDAC6-229ENST00000486665 ATP10BO94823 1461 aa20.27■□□□□ 0.84
HDAC6-229ENST00000486665 FMN1Q68DA7 1419 aa20.27■□□□□ 0.83
HDAC6-229ENST00000486665 HECW2Q9P2P5 1572 aa20.25■□□□□ 0.83
HDAC6-229ENST00000486665 VPS8Q8N3P4 1428 aa20.23■□□□□ 0.83
HDAC6-229ENST00000486665 ATP1B4Q9UN42 357 aaPredicted RBP20.22■□□□□ 0.83
HDAC6-229ENST00000486665 ABCA9Q8IUA7 1624 aa20.2■□□□□ 0.82
HDAC6-229ENST00000486665 RAPGEF6Q8TEU7 1601 aa20.2■□□□□ 0.82
HDAC6-229ENST00000486665 CASKIN1Q8WXD9 1431 aa20.19■□□□□ 0.82
HDAC6-229ENST00000486665 ARAP3Q8WWN8 1544 aa20.19■□□□□ 0.82
HDAC6-229ENST00000486665 ILDR1Q86SU0 546 aaPredicted RBP20.19■□□□□ 0.82
HDAC6-229ENST00000486665 PCF11O94913 1555 aaKnown RBP20.17■□□□□ 0.82
HDAC6-229ENST00000486665 NUP153P49790 1475 aaKnown RBP20.14■□□□□ 0.81
HDAC6-229ENST00000486665 FYCO1Q9BQS8 1478 aa20.12■□□□□ 0.81
HDAC6-229ENST00000486665 FRMPD1Q5SYB0 1578 aa20.11■□□□□ 0.81
HDAC6-229ENST00000486665 RAPGEF3O95398 923 aa20.1■□□□□ 0.81
HDAC6-229ENST00000486665 HECW1Q76N89 1606 aa20.09■□□□□ 0.81
HDAC6-229ENST00000486665 ADAMTSL3P82987 1691 aa20.07■□□□□ 0.8
HDAC6-229ENST00000486665 NEO1Q92859 1461 aa20.06■□□□□ 0.8
HDAC6-229ENST00000486665 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.06■□□□□ 0.8
HDAC6-229ENST00000486665 HNRNPUL2Q1KMD3 747 aaKnown RBP20.06■□□□□ 0.8
HDAC6-229ENST00000486665 CDK13Q14004 1512 aaKnown RBP20.06■□□□□ 0.8
HDAC6-229ENST00000486665 LRRIQ1Q96JM4 1722 aa20.05■□□□□ 0.8
HDAC6-229ENST00000486665 PHLDB1Q86UU1 1377 aa20.03■□□□□ 0.8
HDAC6-229ENST00000486665 APLP2Q06481 763 aa20.01■□□□□ 0.79
HDAC6-229ENST00000486665 BCORL1Q5H9F3 1711 aa20.01■□□□□ 0.79
HDAC6-229ENST00000486665 PTPRMP28827 1452 aa20■□□□□ 0.79
HDAC6-229ENST00000486665 CCDC18Q5T9S5 1454 aa20■□□□□ 0.79
HDAC6-229ENST00000486665 RICTORQ6R327 1708 aa19.99■□□□□ 0.79
HDAC6-229ENST00000486665 KANK4Q5T7N3 995 aaPredicted RBP19.99■□□□□ 0.79
HDAC6-229ENST00000486665 TTC37Q6PGP7 1564 aa19.99■□□□□ 0.79
HDAC6-229ENST00000486665 MADDQ8WXG6 1647 aa19.98■□□□□ 0.79
HDAC6-229ENST00000486665 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.98■□□□□ 0.79
HDAC6-229ENST00000486665 TIAM1Q13009 1591 aa19.97■□□□□ 0.79
HDAC6-229ENST00000486665 PLEKHD1A6NEE1 506 aa19.97■□□□□ 0.79
HDAC6-229ENST00000486665 MAP3K1Q13233 1512 aa19.97■□□□□ 0.79
HDAC6-229ENST00000486665 PPARGC1BQ86YN6 1023 aaKnown RBP19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms