RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 HIRIP3Q9BW71 556 aaPredicted RBP15.17■□□□□ 0.02
HDAC6-228ENST00000486227 MIER1Q8N108 512 aa15.17■□□□□ 0.02
HDAC6-228ENST00000486227 KCNH8Q96L42 1107 aa15.15■□□□□ 0.02
HDAC6-228ENST00000486227 CADPSQ9ULU8 1353 aa15.14■□□□□ 0.01
HDAC6-228ENST00000486227 VPS8Q8N3P4 1428 aa15.13■□□□□ 0.01
HDAC6-228ENST00000486227 TDRD9Q8NDG6 1382 aaKnown RBP15.12■□□□□ 0.01
HDAC6-228ENST00000486227 KANK4Q5T7N3 995 aaPredicted RBP15.11■□□□□ 0.01
HDAC6-228ENST00000486227 KDM2AQ9Y2K7 1162 aa15.11■□□□□ 0.01
HDAC6-228ENST00000486227 CFDP1Q9UEE9 299 aaPredicted RBP15.11■□□□□ 0.01
HDAC6-228ENST00000486227 DAXXQ9UER7 740 aaPredicted RBP15.11■□□□□ 0.01
HDAC6-228ENST00000486227 FHAD1B1AJZ9 1412 aa15.09■□□□□ 0.01
HDAC6-228ENST00000486227 PDS5BQ9NTI5 1447 aa15.09■□□□□ 0.01
HDAC6-228ENST00000486227 CCNB3Q8WWL7 1395 aa15.08■□□□□ 0
HDAC6-228ENST00000486227 RUSC2Q8N2Y8 1516 aa15.08■□□□□ 0
HDAC6-228ENST00000486227 FKBP8Q14318 412 aa15.08■□□□□ 0
HDAC6-228ENST00000486227 ANP32EQ9BTT0 268 aa15.06■□□□□ 0
HDAC6-228ENST00000486227 EIF4G1Q04637 1599 aaKnown RBP15.05■□□□□ 0
HDAC6-228ENST00000486227 NEFMP07197 916 aa15.05■□□□□ -0
HDAC6-228ENST00000486227 SIN3AQ96ST3 1273 aa15.05■□□□□ -0
HDAC6-228ENST00000486227 HNRNPUQ00839 825 aaKnown RBP eCLIP15.03■□□□□ -0
HDAC6-228ENST00000486227 FAM9BQ8IZU0 186 aa15.03■□□□□ -0
HDAC6-228ENST00000486227 RAPGEF2Q9Y4G8 1499 aa15.02□□□□□ -0.01
HDAC6-228ENST00000486227 SLC24A1O60721 1099 aa15.01□□□□□ -0.01
HDAC6-228ENST00000486227 EIF4G2P78344 907 aaKnown RBP eCLIP15.01□□□□□ -0.012e-9■■■■■ 73
HDAC6-228ENST00000486227 ARID4BQ4LE39 1312 aaPredicted RBP14.96□□□□□ -0.01
HDAC6-228ENST00000486227 RGL3Q3MIN7 710 aa14.96□□□□□ -0.01
HDAC6-228ENST00000486227 TRHP20396 242 aaPredicted RBP14.94□□□□□ -0.02
HDAC6-228ENST00000486227 MRS2Q9HD23 443 aa14.93□□□□□ -0.02
HDAC6-228ENST00000486227 SALL2Q9Y467 1007 aaPredicted RBP14.93□□□□□ -0.02
HDAC6-228ENST00000486227 TMC1Q8TDI8 760 aa14.93□□□□□ -0.02
HDAC6-228ENST00000486227 FANCD2Q9BXW9 1451 aa14.92□□□□□ -0.02
HDAC6-228ENST00000486227 FHOD3Q2V2M9 1422 aa14.89□□□□□ -0.03
HDAC6-228ENST00000486227 CANXP27824 592 aaKnown RBP14.89□□□□□ -0.03
HDAC6-228ENST00000486227 NCAPD3P42695 1498 aa14.89□□□□□ -0.03
HDAC6-228ENST00000486227 ARHGAP35Q9NRY4 1499 aa14.88□□□□□ -0.03
HDAC6-228ENST00000486227 FMN1Q68DA7 1419 aa14.88□□□□□ -0.03
HDAC6-228ENST00000486227 PPP1R15AO75807 674 aaPredicted RBP14.88□□□□□ -0.03
HDAC6-228ENST00000486227 ANP32AP39687 249 aaKnown RBP14.88□□□□□ -0.03
HDAC6-228ENST00000486227 SUPT16HQ9Y5B9 1047 aaKnown RBP14.88□□□□□ -0.03
HDAC6-228ENST00000486227 SETD5Q9C0A6 1442 aa14.87□□□□□ -0.03
HDAC6-228ENST00000486227 SENP3Q9H4L4 574 aaPredicted RBP14.86□□□□□ -0.03
HDAC6-228ENST00000486227 ZBTB47Q9UFB7 747 aaPredicted RBP14.85□□□□□ -0.03
HDAC6-228ENST00000486227 RAB3GAP2Q9H2M9 1393 aa14.83□□□□□ -0.04
HDAC6-228ENST00000486227 BCL11AQ9H165 835 aa14.83□□□□□ -0.04
HDAC6-228ENST00000486227 IGF1RP08069 1367 aa14.82□□□□□ -0.04
HDAC6-228ENST00000486227 CARMIL2Q6F5E8 1435 aa14.82□□□□□ -0.04
HDAC6-228ENST00000486227 CARD11Q9BXL7 1154 aa14.81□□□□□ -0.04
HDAC6-228ENST00000486227 FGD5Q6ZNL6 1462 aa14.8□□□□□ -0.04
HDAC6-228ENST00000486227 C14orf37Q86TY3 774 aa14.79□□□□□ -0.04
HDAC6-228ENST00000486227 FOXD1Q16676 465 aa14.79□□□□□ -0.04
HDAC6-228ENST00000486227 TIMELESSQ9UNS1 1208 aa14.78□□□□□ -0.04
HDAC6-228ENST00000486227 RAD54L2Q9Y4B4 1467 aa14.77□□□□□ -0.05
HDAC6-228ENST00000486227 JPH4Q96JJ6 628 aa14.76□□□□□ -0.05
HDAC6-228ENST00000486227 WDR43Q15061 677 aaKnown RBP eCLIP14.75□□□□□ -0.05
HDAC6-228ENST00000486227 SENP3-EIF4A1A0A087X0R7 540 aa14.75□□□□□ -0.05
HDAC6-228ENST00000486227 IRX6P78412 446 aaPredicted RBP14.75□□□□□ -0.05
HDAC6-228ENST00000486227 PKD2Q13563 968 aa14.73□□□□□ -0.05
HDAC6-228ENST00000486227 DCAF11Q8TEB1 546 aa14.73□□□□□ -0.05
HDAC6-228ENST00000486227 MPHOSPH9Q99550 1183 aa14.71□□□□□ -0.05
HDAC6-228ENST00000486227 CFTRP13569 1480 aa14.69□□□□□ -0.06
HDAC6-228ENST00000486227 GAPVD1Q14C86 1478 aa14.69□□□□□ -0.06
HDAC6-228ENST00000486227 SYNJ1O43426 1573 aa14.68□□□□□ -0.06
HDAC6-228ENST00000486227 NBR1Q14596 966 aa14.68□□□□□ -0.06
HDAC6-228ENST00000486227 CCDC136Q96JN2 1154 aa14.67□□□□□ -0.06
HDAC6-228ENST00000486227 TSHZ2Q9NRE2 1034 aa14.67□□□□□ -0.06
HDAC6-228ENST00000486227 MLECQ14165 292 aa14.67□□□□□ -0.06
HDAC6-228ENST00000486227 HSPA5P11021 654 aaKnown RBP14.66□□□□□ -0.06
HDAC6-228ENST00000486227 HNRNPMP52272 730 aaKnown RBP eCLIP14.65□□□□□ -0.06
HDAC6-228ENST00000486227 NPM2Q86SE8 214 aaKnown RBP14.65□□□□□ -0.06
HDAC6-228ENST00000486227 EFCAB2Q5VUJ9 269 aa14.65□□□□□ -0.06
HDAC6-228ENST00000486227 KNSTRNQ9Y448 316 aa14.65□□□□□ -0.06
HDAC6-228ENST00000486227 NUP155O75694 1391 aa14.64□□□□□ -0.07
HDAC6-228ENST00000486227 CDCA8Q53HL2 280 aa14.64□□□□□ -0.07
HDAC6-228ENST00000486227 DHX57Q6P158 1386 aaKnown RBP14.63□□□□□ -0.07
HDAC6-228ENST00000486227 PLEKHG5O94827 1062 aa14.63□□□□□ -0.07
HDAC6-228ENST00000486227 NESP48681 1621 aa14.63□□□□□ -0.07
HDAC6-228ENST00000486227 BICRAQ9NZM4 1560 aa14.63□□□□□ -0.07
HDAC6-228ENST00000486227 ANKRD30AQ9BXX3 1397 aa14.63□□□□□ -0.07
HDAC6-228ENST00000486227 CCDC18Q5T9S5 1454 aa14.62□□□□□ -0.07
HDAC6-228ENST00000486227 KIF21BO75037 1637 aa14.62□□□□□ -0.07
HDAC6-228ENST00000486227 HAP1P54257 671 aaPredicted RBP14.61□□□□□ -0.07
HDAC6-228ENST00000486227 AQRO60306 1485 aaKnown RBP eCLIP14.61□□□□□ -0.072e-10■■■■□ 21.4
HDAC6-228ENST00000486227 RBM19Q9Y4C8 960 aaKnown RBP14.61□□□□□ -0.07
HDAC6-228ENST00000486227 EIF5BO60841 1220 aaKnown RBP14.6□□□□□ -0.07
HDAC6-228ENST00000486227 A0A0G2JS52 829 aa14.6□□□□□ -0.07
HDAC6-228ENST00000486227 ZBTB7CA1YPR0 619 aa14.6□□□□□ -0.07
HDAC6-228ENST00000486227 GGT6Q6P531 493 aa14.6□□□□□ -0.07
HDAC6-228ENST00000486227 L3MBTL2Q969R5 705 aa14.6□□□□□ -0.07
HDAC6-228ENST00000486227 KANK1Q14678 1352 aa14.6□□□□□ -0.07
HDAC6-228ENST00000486227 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.59□□□□□ -0.07
HDAC6-228ENST00000486227 OSCARQ8IYS5 282 aa14.58□□□□□ -0.07
HDAC6-228ENST00000486227 HDGFP51858 240 aaKnown RBP14.58□□□□□ -0.08
HDAC6-228ENST00000486227 HMGXB3Q12766 1538 aa14.58□□□□□ -0.08
HDAC6-228ENST00000486227 CC2D1BQ5T0F9 858 aaKnown RBP14.57□□□□□ -0.08
HDAC6-228ENST00000486227 CC2D2AQ9P2K1 1620 aa14.56□□□□□ -0.08
HDAC6-228ENST00000486227 PTPRGP23470 1445 aa14.55□□□□□ -0.08
HDAC6-228ENST00000486227 POGKQ9P215 609 aa14.55□□□□□ -0.08
HDAC6-228ENST00000486227 CUX1P39880 1505 aa14.55□□□□□ -0.08
HDAC6-228ENST00000486227 ARAP1Q96P48 1450 aa14.55□□□□□ -0.08
HDAC6-228ENST00000486227 TMF1P82094 1093 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms