RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 ERCC6L2Q5T890 1561 aa26.64■■□□□ 1.86
CCDC28B-205ENST00000483009 KIAA0586Q9BVV6 1533 aa26.61■■□□□ 1.85
CCDC28B-205ENST00000483009 PRG4Q92954 1404 aaPredicted RBP26.61■■□□□ 1.85
CCDC28B-205ENST00000483009 RAPGEF2Q9Y4G8 1499 aa26.54■■□□□ 1.84
CCDC28B-205ENST00000483009 PRXQ9BXM0 1461 aa26.41■■□□□ 1.82
CCDC28B-205ENST00000483009 IQGAP2Q13576 1575 aa26.4■■□□□ 1.82
CCDC28B-205ENST00000483009 TRHP20396 242 aaPredicted RBP26.38■■□□□ 1.81
CCDC28B-205ENST00000483009 EEA1Q15075 1411 aa26.35■■□□□ 1.81
CCDC28B-205ENST00000483009 CSRNP3Q8WYN3 585 aa26.35■■□□□ 1.81
CCDC28B-205ENST00000483009 CARMIL2Q6F5E8 1435 aa26.34■■□□□ 1.81
CCDC28B-205ENST00000483009 CHIC1Q5VXU3 224 aa26.34■■□□□ 1.81
CCDC28B-205ENST00000483009 TNIKQ9UKE5 1360 aa26.28■■□□□ 1.8
CCDC28B-205ENST00000483009 PTPRGP23470 1445 aa26.28■■□□□ 1.8
CCDC28B-205ENST00000483009 UGGT2Q9NYU1 1516 aa26.28■■□□□ 1.8
CCDC28B-205ENST00000483009 DISP1Q96F81 1524 aa26.24■■□□□ 1.79
CCDC28B-205ENST00000483009 TTBK1Q5TCY1 1321 aaPredicted RBP26.2■■□□□ 1.79
CCDC28B-205ENST00000483009 FAM9AQ8IZU1 332 aaPredicted RBP26.2■■□□□ 1.78
CCDC28B-205ENST00000483009 NPM1P06748 294 aaKnown RBP eCLIP26.18■■□□□ 1.78
CCDC28B-205ENST00000483009 CTTNBP2Q8WZ74 1663 aa26.17■■□□□ 1.78
CCDC28B-205ENST00000483009 ADCY10Q96PN6 1610 aa26.17■■□□□ 1.78
CCDC28B-205ENST00000483009 KIAA0556O60303 1618 aa26.15■■□□□ 1.78
CCDC28B-205ENST00000483009 GOLGA3Q08378 1498 aa26.12■■□□□ 1.77
CCDC28B-205ENST00000483009 UACAQ9BZF9 1416 aa26.09■■□□□ 1.77
CCDC28B-205ENST00000483009 MAPKBP1O60336 1514 aa26.08■■□□□ 1.77
CCDC28B-205ENST00000483009 UHRF1BP1LA0JNW5 1464 aa26.07■■□□□ 1.76
CCDC28B-205ENST00000483009 ABCC2Q92887 1545 aa26.05■■□□□ 1.76
CCDC28B-205ENST00000483009 KIF21BO75037 1637 aa26.03■■□□□ 1.76
CCDC28B-205ENST00000483009 ABCC10Q5T3U5 1492 aa26■■□□□ 1.75
CCDC28B-205ENST00000483009 FAM69CQ0P6D2 419 aa25.97■■□□□ 1.75
CCDC28B-205ENST00000483009 PLB1Q6P1J6 1458 aa25.94■■□□□ 1.74
CCDC28B-205ENST00000483009 KDM5BQ9UGL1 1544 aa25.93■■□□□ 1.74
CCDC28B-205ENST00000483009 P3H3Q8IVL6 736 aa25.93■■□□□ 1.74
CCDC28B-205ENST00000483009 DIP2BQ9P265 1576 aa25.91■■□□□ 1.74
CCDC28B-205ENST00000483009 ASXL2Q76L83 1435 aa25.91■■□□□ 1.74
CCDC28B-205ENST00000483009 SAMD9Q5K651 1589 aa25.9■■□□□ 1.74
CCDC28B-205ENST00000483009 KIF13AQ9H1H9 1805 aa25.9■■□□□ 1.74
CCDC28B-205ENST00000483009 ABCA8O94911 1581 aa25.89■■□□□ 1.73
CCDC28B-205ENST00000483009 RANGAP1P46060 587 aaPredicted RBP25.87■■□□□ 1.73
CCDC28B-205ENST00000483009 UBTFP17480 764 aaKnown RBP25.86■■□□□ 1.73
CCDC28B-205ENST00000483009 EHMT2Q96KQ7 1210 aa25.86■■□□□ 1.73
CCDC28B-205ENST00000483009 ZCCHC11Q5TAX3 1644 aaKnown RBP25.81■■□□□ 1.72
CCDC28B-205ENST00000483009 FHOD3Q2V2M9 1422 aa25.8■■□□□ 1.72
CCDC28B-205ENST00000483009 EFCAB5A4FU69 1503 aa25.78■■□□□ 1.72
CCDC28B-205ENST00000483009 GLI2P10070 1586 aa25.75■■□□□ 1.71
CCDC28B-205ENST00000483009 EPRSP07814 1512 aaKnown RBP25.75■■□□□ 1.71
CCDC28B-205ENST00000483009 WDR7Q9Y4E6 1490 aa25.74■■□□□ 1.71
CCDC28B-205ENST00000483009 ARID3CA6NKF2 412 aa25.7■■□□□ 1.7
CCDC28B-205ENST00000483009 ATP10BO94823 1461 aa25.69■■□□□ 1.7
CCDC28B-205ENST00000483009 RAPGEF6Q8TEU7 1601 aa25.69■■□□□ 1.7
CCDC28B-205ENST00000483009 NUP153P49790 1475 aaKnown RBP25.64■■□□□ 1.69
CCDC28B-205ENST00000483009 ARHGAP35Q9NRY4 1499 aa25.64■■□□□ 1.69
CCDC28B-205ENST00000483009 KCNH8Q96L42 1107 aa25.62■■□□□ 1.69
CCDC28B-205ENST00000483009 TSPOAP1O95153 1857 aa25.61■■□□□ 1.69
CCDC28B-205ENST00000483009 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.59■■□□□ 1.69
CCDC28B-205ENST00000483009 HNRNPUL2Q1KMD3 747 aaKnown RBP25.59■■□□□ 1.69
CCDC28B-205ENST00000483009 MAP3K4Q9Y6R4 1608 aa25.58■■□□□ 1.69
CCDC28B-205ENST00000483009 FMN1Q68DA7 1419 aa25.57■■□□□ 1.68
CCDC28B-205ENST00000483009 PPRC1Q5VV67 1664 aaKnown RBP25.55■■□□□ 1.68
CCDC28B-205ENST00000483009 TEX14Q8IWB6 1497 aa25.54■■□□□ 1.68
CCDC28B-205ENST00000483009 KDM6BO15054 1643 aa25.54■■□□□ 1.68
CCDC28B-205ENST00000483009 CD109Q6YHK3 1445 aa25.54■■□□□ 1.68
CCDC28B-205ENST00000483009 MAGI3Q5TCQ9 1506 aa25.49■■□□□ 1.67
CCDC28B-205ENST00000483009 PLEKHD1A6NEE1 506 aa25.48■■□□□ 1.67
CCDC28B-205ENST00000483009 CFAP43Q8NDM7 1665 aa25.47■■□□□ 1.67
CCDC28B-205ENST00000483009 CLIP1P30622 1438 aa25.45■■□□□ 1.66
CCDC28B-205ENST00000483009 ATP1B4Q9UN42 357 aaPredicted RBP25.44■■□□□ 1.66
CCDC28B-205ENST00000483009 HECW1Q76N89 1606 aa25.43■■□□□ 1.66
CCDC28B-205ENST00000483009 CDK13Q14004 1512 aaKnown RBP25.42■■□□□ 1.66
CCDC28B-205ENST00000483009 COL17A1Q9UMD9 1497 aaPredicted RBP25.42■■□□□ 1.66
CCDC28B-205ENST00000483009 ABCA9Q8IUA7 1624 aa25.41■■□□□ 1.66
CCDC28B-205ENST00000483009 CASKIN1Q8WXD9 1431 aa25.35■■□□□ 1.65
CCDC28B-205ENST00000483009 CDK11AQ9UQ88 783 aaPredicted RBP25.34■■□□□ 1.65
CCDC28B-205ENST00000483009 PHLDB1Q86UU1 1377 aa25.31■■□□□ 1.64
CCDC28B-205ENST00000483009 PCF11O94913 1555 aaKnown RBP25.3■■□□□ 1.64
CCDC28B-205ENST00000483009 CEP162Q5TB80 1403 aa25.28■■□□□ 1.64
CCDC28B-205ENST00000483009 NEO1Q92859 1461 aa25.28■■□□□ 1.64
CCDC28B-205ENST00000483009 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.27■■□□□ 1.641e-6■■■■■ 42.9
CCDC28B-205ENST00000483009 FYCO1Q9BQS8 1478 aa25.27■■□□□ 1.64
CCDC28B-205ENST00000483009 ARAP3Q8WWN8 1544 aa25.27■■□□□ 1.64
CCDC28B-205ENST00000483009 TROQ12816 1431 aaPredicted RBP25.26■■□□□ 1.63
CCDC28B-205ENST00000483009 CCDC18Q5T9S5 1454 aa25.26■■□□□ 1.63
CCDC28B-205ENST00000483009 LOC105371045A0A1W2PR82 267 aa25.24■■□□□ 1.63
CCDC28B-205ENST00000483009 TTC37Q6PGP7 1564 aa25.22■■□□□ 1.63
CCDC28B-205ENST00000483009 AEBP2Q6ZN18 517 aaPredicted RBP25.19■■□□□ 1.62
CCDC28B-205ENST00000483009 LRRIQ1Q96JM4 1722 aa25.18■■□□□ 1.62
CCDC28B-205ENST00000483009 FANCAO15360 1455 aa25.18■■□□□ 1.62
CCDC28B-205ENST00000483009 PLCH2O75038 1416 aa25.17■■□□□ 1.62
CCDC28B-205ENST00000483009 AKNAQ7Z591 1439 aa25.16■■□□□ 1.62
CCDC28B-205ENST00000483009 KIF14Q15058 1648 aa25.15■■□□□ 1.62
CCDC28B-205ENST00000483009 RAPGEF3O95398 923 aa25.14■■□□□ 1.62
CCDC28B-205ENST00000483009 CFAP74Q9C0B2 1584 aa25.11■■□□□ 1.61
CCDC28B-205ENST00000483009 DENND4BO75064 1496 aaPredicted RBP25.1■■□□□ 1.61
CCDC28B-205ENST00000483009 KDM4FA0A1W2PPD8 638 aa25.09■■□□□ 1.61
CCDC28B-205ENST00000483009 EFCAB2Q5VUJ9 269 aa25.09■■□□□ 1.61
CCDC28B-205ENST00000483009 FRMPD1Q5SYB0 1578 aa25.05■■□□□ 1.6
CCDC28B-205ENST00000483009 ADGRL1O94910 1474 aa25.05■■□□□ 1.6
CCDC28B-205ENST00000483009 MYO5CQ9NQX4 1742 aa25.03■■□□□ 1.6
CCDC28B-205ENST00000483009 SCAPERQ9BY12 1400 aa25.03■■□□□ 1.6
CCDC28B-205ENST00000483009 ARHGAP5Q13017 1502 aa25.02■■□□□ 1.6
CCDC28B-205ENST00000483009 MTUS2Q5JR59 1369 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 755.3 ms