RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 NUP160Q12769 1436 aa13.35□□□□□ -0.27
SYNE1-225ENST00000481502 KIAA0586Q9BVV6 1533 aa13.34□□□□□ -0.27
SYNE1-225ENST00000481502 FBLN2P98095 1184 aa13.32□□□□□ -0.28
SYNE1-225ENST00000481502 LOC105371045A0A1W2PR82 267 aa13.3□□□□□ -0.28
SYNE1-225ENST00000481502 OSCARQ8IYS5 282 aa13.3□□□□□ -0.28
SYNE1-225ENST00000481502 CHD1O14646 1710 aa13.26□□□□□ -0.29
SYNE1-225ENST00000481502 CTTNBP2Q8WZ74 1663 aa13.25□□□□□ -0.29
SYNE1-225ENST00000481502 CEP170Q5SW79 1584 aa13.25□□□□□ -0.29
SYNE1-225ENST00000481502 IQGAP2Q13576 1575 aa13.24□□□□□ -0.29
SYNE1-225ENST00000481502 JPH4Q96JJ6 628 aa13.23□□□□□ -0.29
SYNE1-225ENST00000481502 UGGT2Q9NYU1 1516 aa13.23□□□□□ -0.29
SYNE1-225ENST00000481502 EFCAB5A4FU69 1503 aa13.21□□□□□ -0.29
SYNE1-225ENST00000481502 CLASP1Q7Z460 1538 aa13.21□□□□□ -0.29
SYNE1-225ENST00000481502 CEP162Q5TB80 1403 aa13.2□□□□□ -0.3
SYNE1-225ENST00000481502 CLIP1P30622 1438 aa13.19□□□□□ -0.3
SYNE1-225ENST00000481502 CARMIL2Q6F5E8 1435 aa13.19□□□□□ -0.3
SYNE1-225ENST00000481502 SHROOM2Q13796 1616 aa13.18□□□□□ -0.3
SYNE1-225ENST00000481502 EHMT2Q96KQ7 1210 aa13.16□□□□□ -0.3
SYNE1-225ENST00000481502 SAMD9Q5K651 1589 aa13.15□□□□□ -0.3
SYNE1-225ENST00000481502 ARHGAP35Q9NRY4 1499 aa13.13□□□□□ -0.31
SYNE1-225ENST00000481502 PRG4Q92954 1404 aaPredicted RBP13.13□□□□□ -0.31
SYNE1-225ENST00000481502 DISP1Q96F81 1524 aa13.12□□□□□ -0.31
SYNE1-225ENST00000481502 FMN1Q68DA7 1419 aa13.12□□□□□ -0.31
SYNE1-225ENST00000481502 KIAA0556O60303 1618 aa13.1□□□□□ -0.31
SYNE1-225ENST00000481502 ARAP1Q96P48 1450 aa13.06□□□□□ -0.32
SYNE1-225ENST00000481502 VPS8Q8N3P4 1428 aa13.05□□□□□ -0.32
SYNE1-225ENST00000481502 PTPRGP23470 1445 aa13.05□□□□□ -0.32
SYNE1-225ENST00000481502 RANGAP1P46060 587 aaPredicted RBP13.03□□□□□ -0.32
SYNE1-225ENST00000481502 FHOD3Q2V2M9 1422 aa13.03□□□□□ -0.32
SYNE1-225ENST00000481502 P3H3Q8IVL6 736 aa13.01□□□□□ -0.33
SYNE1-225ENST00000481502 CASKIN1Q8WXD9 1431 aa13.01□□□□□ -0.33
SYNE1-225ENST00000481502 ARHGEF11O15085 1522 aa12.99□□□□□ -0.33
SYNE1-225ENST00000481502 FYCO1Q9BQS8 1478 aa12.99□□□□□ -0.33
SYNE1-225ENST00000481502 UHRF1BP1LA0JNW5 1464 aa12.98□□□□□ -0.33
SYNE1-225ENST00000481502 MAP3K1Q13233 1512 aa12.98□□□□□ -0.33
SYNE1-225ENST00000481502 UACAQ9BZF9 1416 aa12.97□□□□□ -0.33
SYNE1-225ENST00000481502 ABCA8O94911 1581 aa12.96□□□□□ -0.33
SYNE1-225ENST00000481502 ERCC6L2Q5T890 1561 aa12.96□□□□□ -0.33
SYNE1-225ENST00000481502 APLP2Q06481 763 aa12.95□□□□□ -0.34
SYNE1-225ENST00000481502 PLPPR3Q6T4P5 718 aa12.95□□□□□ -0.34
SYNE1-225ENST00000481502 CCDC18Q5T9S5 1454 aa12.94□□□□□ -0.34
SYNE1-225ENST00000481502 DNAJC5Q9H3Z4 198 aa12.94□□□□□ -0.34
SYNE1-225ENST00000481502 HECW1Q76N89 1606 aa12.93□□□□□ -0.34
SYNE1-225ENST00000481502 RAPGEF6Q8TEU7 1601 aa12.93□□□□□ -0.34
SYNE1-225ENST00000481502 ABCC2Q92887 1545 aa12.93□□□□□ -0.34
SYNE1-225ENST00000481502 CDK11AQ9UQ88 783 aaPredicted RBP12.92□□□□□ -0.34
SYNE1-225ENST00000481502 RIMBP3CA6NJZ7 1639 aa12.91□□□□□ -0.34
SYNE1-225ENST00000481502 RIMBP3BA6NNM3 1639 aa12.91□□□□□ -0.34
SYNE1-225ENST00000481502 RIMBP3Q9UFD9 1639 aa12.91□□□□□ -0.34
SYNE1-225ENST00000481502 PLB1Q6P1J6 1458 aa12.91□□□□□ -0.34
SYNE1-225ENST00000481502 NUP153P49790 1475 aaKnown RBP12.9□□□□□ -0.34
SYNE1-225ENST00000481502 EPRSP07814 1512 aaKnown RBP12.89□□□□□ -0.35
SYNE1-225ENST00000481502 KDM5BQ9UGL1 1544 aa12.89□□□□□ -0.35
SYNE1-225ENST00000481502 PCF11O94913 1555 aaKnown RBP12.89□□□□□ -0.35
SYNE1-225ENST00000481502 NPM1P06748 294 aaKnown RBP eCLIP12.87□□□□□ -0.35
SYNE1-225ENST00000481502 ATP10BO94823 1461 aa12.86□□□□□ -0.35
SYNE1-225ENST00000481502 CYB5RLQ6IPT4 315 aa12.85□□□□□ -0.35
SYNE1-225ENST00000481502 TTBK1Q5TCY1 1321 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-225ENST00000481502 PLEKHD1A6NEE1 506 aa12.84□□□□□ -0.35
SYNE1-225ENST00000481502 MSH5O43196 834 aa12.84□□□□□ -0.35
SYNE1-225ENST00000481502 ATP1B4Q9UN42 357 aaPredicted RBP12.84□□□□□ -0.35
SYNE1-225ENST00000481502 TIAM1Q13009 1591 aa12.84□□□□□ -0.35
SYNE1-225ENST00000481502 ADCY10Q96PN6 1610 aa12.82□□□□□ -0.36
SYNE1-225ENST00000481502 CFAP43Q8NDM7 1665 aa12.81□□□□□ -0.36
SYNE1-225ENST00000481502 LRRC9Q6ZRR7 1453 aa12.81□□□□□ -0.36
SYNE1-225ENST00000481502 MTUS2Q5JR59 1369 aa12.81□□□□□ -0.36
SYNE1-225ENST00000481502 TROQ12816 1431 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-225ENST00000481502 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-225ENST00000481502 HNRNPUL2Q1KMD3 747 aaKnown RBP12.79□□□□□ -0.36
SYNE1-225ENST00000481502 EHBP1L1Q8N3D4 1523 aa12.78□□□□□ -0.36
SYNE1-225ENST00000481502 MAPKBP1O60336 1514 aa12.78□□□□□ -0.36
SYNE1-225ENST00000481502 CDK13Q14004 1512 aaKnown RBP12.77□□□□□ -0.37
SYNE1-225ENST00000481502 ZCCHC11Q5TAX3 1644 aaKnown RBP12.77□□□□□ -0.37
SYNE1-225ENST00000481502 LRRIQ1Q96JM4 1722 aa12.76□□□□□ -0.37
SYNE1-225ENST00000481502 KANK4Q5T7N3 995 aaPredicted RBP12.75□□□□□ -0.37
SYNE1-225ENST00000481502 WDR7Q9Y4E6 1490 aa12.74□□□□□ -0.37
SYNE1-225ENST00000481502 ASXL2Q76L83 1435 aa12.73□□□□□ -0.37
SYNE1-225ENST00000481502 SUPT6HQ7KZ85 1726 aaKnown RBP12.71□□□□□ -0.37
SYNE1-225ENST00000481502 MAGI3Q5TCQ9 1506 aa12.71□□□□□ -0.38
SYNE1-225ENST00000481502 ARID3CA6NKF2 412 aa12.7□□□□□ -0.38
SYNE1-225ENST00000481502 NCOA2Q15596 1464 aa12.69□□□□□ -0.38
SYNE1-225ENST00000481502 MIA2Q96PC5 1412 aa12.69□□□□□ -0.38
SYNE1-225ENST00000481502 KIF14Q15058 1648 aa12.69□□□□□ -0.38
SYNE1-225ENST00000481502 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.68□□□□□ -0.38
SYNE1-225ENST00000481502 ARAP3Q8WWN8 1544 aa12.67□□□□□ -0.38
SYNE1-225ENST00000481502 ABCC10Q5T3U5 1492 aa12.67□□□□□ -0.38
SYNE1-225ENST00000481502 GLI2P10070 1586 aa12.67□□□□□ -0.38
SYNE1-225ENST00000481502 CCNB3Q8WWL7 1395 aa12.67□□□□□ -0.38
SYNE1-225ENST00000481502 MYOM3Q5VTT5 1437 aa12.65□□□□□ -0.38
SYNE1-225ENST00000481502 PLCH2O75038 1416 aa12.64□□□□□ -0.39
SYNE1-225ENST00000481502 ABCA9Q8IUA7 1624 aa12.64□□□□□ -0.39
SYNE1-225ENST00000481502 KCNH8Q96L42 1107 aa12.64□□□□□ -0.39
SYNE1-225ENST00000481502 RRBP1Q9P2E9 1410 aaKnown RBP12.63□□□□□ -0.39
SYNE1-225ENST00000481502 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.63□□□□□ -0.39
SYNE1-225ENST00000481502 GPATCH8Q9UKJ3 1502 aaKnown RBP12.63□□□□□ -0.39
SYNE1-225ENST00000481502 RSPH4AQ5TD94 716 aa12.63□□□□□ -0.39
SYNE1-225ENST00000481502 PHLDB1Q86UU1 1377 aa12.63□□□□□ -0.39
SYNE1-225ENST00000481502 ITSN2Q9NZM3 1697 aa12.61□□□□□ -0.39
SYNE1-225ENST00000481502 TRIM26Q12899 539 aaPredicted RBP12.61□□□□□ -0.39
SYNE1-225ENST00000481502 EFCAB2Q5VUJ9 269 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms