RNA–Protein interactions for RNA: ENST00000477547.6

SEC13-215, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 1,313 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-215ENST00000477547 CARMIL1Q5VZK9 1371 aa25.44■■□□□ 1.66
SEC13-215ENST00000477547 KIF21BO75037 1637 aa25.43■■□□□ 1.66
SEC13-215ENST00000477547 PRXQ9BXM0 1461 aa25.41■■□□□ 1.66
SEC13-215ENST00000477547 RAPGEF2Q9Y4G8 1499 aa25.4■■□□□ 1.66
SEC13-215ENST00000477547 CEP170Q5SW79 1584 aa25.39■■□□□ 1.65
SEC13-215ENST00000477547 CSRNP3Q8WYN3 585 aa25.38■■□□□ 1.65
SEC13-215ENST00000477547 CTTNBP2Q8WZ74 1663 aa25.36■■□□□ 1.65
SEC13-215ENST00000477547 NUP160Q12769 1436 aa25.32■■□□□ 1.64
SEC13-215ENST00000477547 ERCC6L2Q5T890 1561 aa25.28■■□□□ 1.64
SEC13-215ENST00000477547 GOLGA3Q08378 1498 aa25.24■■□□□ 1.63
SEC13-215ENST00000477547 IQGAP2Q13576 1575 aa25.21■■□□□ 1.63
SEC13-215ENST00000477547 SHROOM2Q13796 1616 aa25.18■■□□□ 1.62
SEC13-215ENST00000477547 KIAA0586Q9BVV6 1533 aa25.17■■□□□ 1.62
SEC13-215ENST00000477547 EHMT2Q96KQ7 1210 aa25.1■■□□□ 1.61
SEC13-215ENST00000477547 KIF13AQ9H1H9 1805 aa25.06■■□□□ 1.6
SEC13-215ENST00000477547 UGGT2Q9NYU1 1516 aa25.02■■□□□ 1.6
SEC13-215ENST00000477547 UBTFP17480 764 aaKnown RBP25■■□□□ 1.59
SEC13-215ENST00000477547 KIAA0556O60303 1618 aa24.98■■□□□ 1.59
SEC13-215ENST00000477547 PRG4Q92954 1404 aaPredicted RBP24.95■■□□□ 1.58
SEC13-215ENST00000477547 SAMD9Q5K651 1589 aa24.95■■□□□ 1.58
SEC13-215ENST00000477547 JPH4Q96JJ6 628 aa24.92■■□□□ 1.58
SEC13-215ENST00000477547 DISP1Q96F81 1524 aa24.92■■□□□ 1.58
SEC13-215ENST00000477547 EFCAB5A4FU69 1503 aa24.91■■□□□ 1.58
SEC13-215ENST00000477547 TNIKQ9UKE5 1360 aa24.9■■□□□ 1.58
SEC13-215ENST00000477547 CARMIL2Q6F5E8 1435 aa24.88■■□□□ 1.57
SEC13-215ENST00000477547 FAM69CQ0P6D2 419 aa24.87■■□□□ 1.57
SEC13-215ENST00000477547 LOC105371045A0A1W2PR82 267 aa24.84■■□□□ 1.57
SEC13-215ENST00000477547 ABCC10Q5T3U5 1492 aa24.82■■□□□ 1.56
SEC13-215ENST00000477547 RANGAP1P46060 587 aaPredicted RBP24.82■■□□□ 1.56
SEC13-215ENST00000477547 KDM4FA0A1W2PPD8 638 aa24.8■■□□□ 1.56
SEC13-215ENST00000477547 ARHGAP35Q9NRY4 1499 aa24.78■■□□□ 1.56
SEC13-215ENST00000477547 CEP162Q5TB80 1403 aa24.78■■□□□ 1.56
SEC13-215ENST00000477547 CLIP1P30622 1438 aa24.76■■□□□ 1.55
SEC13-215ENST00000477547 NPM1P06748 294 aaKnown RBP eCLIP24.76■■□□□ 1.55
SEC13-215ENST00000477547 DIP2BQ9P265 1576 aa24.75■■□□□ 1.55
SEC13-215ENST00000477547 FHOD3Q2V2M9 1422 aa24.74■■□□□ 1.55
SEC13-215ENST00000477547 MAPKBP1O60336 1514 aa24.73■■□□□ 1.55
SEC13-215ENST00000477547 KDM6BO15054 1643 aa24.7■■□□□ 1.55
SEC13-215ENST00000477547 ADCY10Q96PN6 1610 aa24.7■■□□□ 1.54
SEC13-215ENST00000477547 ILDR1Q86SU0 546 aaPredicted RBP24.69■■□□□ 1.54
SEC13-215ENST00000477547 TSPOAP1O95153 1857 aa24.68■■□□□ 1.54
SEC13-215ENST00000477547 P3H3Q8IVL6 736 aa24.67■■□□□ 1.54
SEC13-215ENST00000477547 PTPRGP23470 1445 aa24.67■■□□□ 1.54
SEC13-215ENST00000477547 TTBK1Q5TCY1 1321 aaPredicted RBP24.64■■□□□ 1.53
SEC13-215ENST00000477547 RAPGEF6Q8TEU7 1601 aa24.63■■□□□ 1.53
SEC13-215ENST00000477547 ABCA8O94911 1581 aa24.62■■□□□ 1.53
SEC13-215ENST00000477547 ABCC2Q92887 1545 aa24.59■■□□□ 1.53
SEC13-215ENST00000477547 PCF11O94913 1555 aaKnown RBP24.59■■□□□ 1.53
SEC13-215ENST00000477547 PLB1Q6P1J6 1458 aa24.59■■□□□ 1.53
SEC13-215ENST00000477547 FMN1Q68DA7 1419 aa24.58■■□□□ 1.53
SEC13-215ENST00000477547 UACAQ9BZF9 1416 aa24.56■■□□□ 1.52
SEC13-215ENST00000477547 HECW1Q76N89 1606 aa24.55■■□□□ 1.52
SEC13-215ENST00000477547 UHRF1BP1LA0JNW5 1464 aa24.54■■□□□ 1.52
SEC13-215ENST00000477547 ZCCHC11Q5TAX3 1644 aaKnown RBP24.5■■□□□ 1.51
SEC13-215ENST00000477547 LRRIQ1Q96JM4 1722 aa24.5■■□□□ 1.51
SEC13-215ENST00000477547 FYCO1Q9BQS8 1478 aa24.47■■□□□ 1.51
SEC13-215ENST00000477547 NUP153P49790 1475 aaKnown RBP24.45■■□□□ 1.51
SEC13-215ENST00000477547 VPS8Q8N3P4 1428 aa24.44■■□□□ 1.5
SEC13-215ENST00000477547 CASKIN1Q8WXD9 1431 aa24.43■■□□□ 1.5
SEC13-215ENST00000477547 KDM5BQ9UGL1 1544 aa24.42■■□□□ 1.5
SEC13-215ENST00000477547 ADGRL1O94910 1474 aa24.41■■□□□ 1.5
SEC13-215ENST00000477547 PPRC1Q5VV67 1664 aaKnown RBP24.4■■□□□ 1.5
SEC13-215ENST00000477547 CDK13Q14004 1512 aaKnown RBP24.38■■□□□ 1.49
SEC13-215ENST00000477547 CFAP43Q8NDM7 1665 aa24.38■■□□□ 1.49
SEC13-215ENST00000477547 ASXL2Q76L83 1435 aa24.36■■□□□ 1.49
SEC13-215ENST00000477547 EPRSP07814 1512 aaKnown RBP24.35■■□□□ 1.49
SEC13-215ENST00000477547 CCDC18Q5T9S5 1454 aa24.35■■□□□ 1.49
SEC13-215ENST00000477547 ATP10BO94823 1461 aa24.32■■□□□ 1.48
SEC13-215ENST00000477547 ARID3CA6NKF2 412 aa24.32■■□□□ 1.48
SEC13-215ENST00000477547 COL17A1Q9UMD9 1497 aaPredicted RBP24.31■■□□□ 1.48
SEC13-215ENST00000477547 GLI2P10070 1586 aa24.31■■□□□ 1.48
SEC13-215ENST00000477547 ATP1B4Q9UN42 357 aaPredicted RBP24.31■■□□□ 1.48
SEC13-215ENST00000477547 HECW2Q9P2P5 1572 aa24.28■■□□□ 1.48
SEC13-215ENST00000477547 TIAM1Q13009 1591 aa24.26■■□□□ 1.47
SEC13-215ENST00000477547 WDR7Q9Y4E6 1490 aa24.24■■□□□ 1.47
SEC13-215ENST00000477547 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.21■■□□□ 1.47
SEC13-215ENST00000477547 HNRNPUL2Q1KMD3 747 aaKnown RBP24.21■■□□□ 1.47
SEC13-215ENST00000477547 MAGI3Q5TCQ9 1506 aa24.18■■□□□ 1.46
SEC13-215ENST00000477547 MAP3K4Q9Y6R4 1608 aa24.18■■□□□ 1.46
SEC13-215ENST00000477547 KIF14Q15058 1648 aa24.17■■□□□ 1.46
SEC13-215ENST00000477547 MAP3K1Q13233 1512 aa24.17■■□□□ 1.46
SEC13-215ENST00000477547 EHBP1L1Q8N3D4 1523 aa24.17■■□□□ 1.46
SEC13-215ENST00000477547 TROQ12816 1431 aaPredicted RBP24.12■■□□□ 1.45
SEC13-215ENST00000477547 TEX14Q8IWB6 1497 aa24.12■■□□□ 1.45
SEC13-215ENST00000477547 ABCA9Q8IUA7 1624 aa24.1■■□□□ 1.45
SEC13-215ENST00000477547 CDK11AQ9UQ88 783 aaPredicted RBP24.1■■□□□ 1.45
SEC13-215ENST00000477547 TTC37Q6PGP7 1564 aa24.09■■□□□ 1.45
SEC13-215ENST00000477547 SUPT6HQ7KZ85 1726 aaKnown RBP24.08■■□□□ 1.45
SEC13-215ENST00000477547 PLEKHD1A6NEE1 506 aa24.08■■□□□ 1.44
SEC13-215ENST00000477547 MTUS2Q5JR59 1369 aa24.07■■□□□ 1.44
SEC13-215ENST00000477547 LRRC9Q6ZRR7 1453 aa24.06■■□□□ 1.44
SEC13-215ENST00000477547 APLP2Q06481 763 aa24.06■■□□□ 1.44
SEC13-215ENST00000477547 MYO5CQ9NQX4 1742 aa24.05■■□□□ 1.44
SEC13-215ENST00000477547 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.04■■□□□ 1.44
SEC13-215ENST00000477547 KCNH8Q96L42 1107 aa24■■□□□ 1.43
SEC13-215ENST00000477547 CDC42BPAQ5VT25 1732 aa24■■□□□ 1.43
SEC13-215ENST00000477547 ITSN2Q9NZM3 1697 aa23.99■■□□□ 1.43
SEC13-215ENST00000477547 PREX2Q70Z35 1606 aa23.98■■□□□ 1.43
SEC13-215ENST00000477547 NCOA2Q15596 1464 aa23.94■■□□□ 1.42
SEC13-215ENST00000477547 CD109Q6YHK3 1445 aa23.94■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms