RNA–Protein interactions for RNA: ENST00000476494.1

CLDN4-205, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-205ENST00000476494 TSPOAP1O95153 1857 aa12.48□□□□□ -0.41
CLDN4-205ENST00000476494 GRIN2AQ12879 1464 aa12.46□□□□□ -0.41
CLDN4-205ENST00000476494 CUX1P39880 1505 aa12.44□□□□□ -0.42
CLDN4-205ENST00000476494 ABCA5Q8WWZ7 1642 aa12.41□□□□□ -0.42
CLDN4-205ENST00000476494 COL17A1Q9UMD9 1497 aaPredicted RBP12.4□□□□□ -0.42
CLDN4-205ENST00000476494 PRG4Q92954 1404 aaPredicted RBP12.4□□□□□ -0.42
CLDN4-205ENST00000476494 ADCY10Q96PN6 1610 aa12.4□□□□□ -0.42
CLDN4-205ENST00000476494 PPRC1Q5VV67 1664 aaKnown RBP12.38□□□□□ -0.43
CLDN4-205ENST00000476494 NPM1P06748 294 aaKnown RBP eCLIP12.37□□□□□ -0.43
CLDN4-205ENST00000476494 ABCA10Q8WWZ4 1543 aa12.37□□□□□ -0.43
CLDN4-205ENST00000476494 JPH4Q96JJ6 628 aa12.36□□□□□ -0.43
CLDN4-205ENST00000476494 ADAMTS12P58397 1594 aa12.35□□□□□ -0.43
CLDN4-205ENST00000476494 DISP3Q9P2K9 1392 aa12.3□□□□□ -0.44
CLDN4-205ENST00000476494 FHAD1B1AJZ9 1412 aa12.28□□□□□ -0.44
CLDN4-205ENST00000476494 GLI2P10070 1586 aa12.27□□□□□ -0.44
CLDN4-205ENST00000476494 TOP2BQ02880 1626 aa12.26□□□□□ -0.45
CLDN4-205ENST00000476494 RUSC2Q8N2Y8 1516 aa12.2□□□□□ -0.46
CLDN4-205ENST00000476494 ASXL2Q76L83 1435 aa12.2□□□□□ -0.46
CLDN4-205ENST00000476494 MAP3K4Q9Y6R4 1608 aa12.18□□□□□ -0.46
CLDN4-205ENST00000476494 ERICH3Q5RHP9 1530 aa12.17□□□□□ -0.46
CLDN4-205ENST00000476494 PLB1Q6P1J6 1458 aa12.17□□□□□ -0.46
CLDN4-205ENST00000476494 CERKQ8TCT0 537 aa12.17□□□□□ -0.46
CLDN4-205ENST00000476494 ABCC2Q92887 1545 aa12.15□□□□□ -0.46
CLDN4-205ENST00000476494 PTPRMP28827 1452 aa12.14□□□□□ -0.47
CLDN4-205ENST00000476494 EPRSP07814 1512 aaKnown RBP12.12□□□□□ -0.47
CLDN4-205ENST00000476494 PCF11O94913 1555 aaKnown RBP12.12□□□□□ -0.47
CLDN4-205ENST00000476494 WRNQ14191 1432 aaPredicted RBP eCLIP12.11□□□□□ -0.47
CLDN4-205ENST00000476494 ADAMTSL3P82987 1691 aa12.11□□□□□ -0.47
CLDN4-205ENST00000476494 SPATA31D1Q6ZQQ2 1576 aa12.11□□□□□ -0.47
CLDN4-205ENST00000476494 TEX14Q8IWB6 1497 aa12.11□□□□□ -0.47
CLDN4-205ENST00000476494 KIF21BO75037 1637 aa12.09□□□□□ -0.47
CLDN4-205ENST00000476494 PTPRGP23470 1445 aa12.09□□□□□ -0.47
CLDN4-205ENST00000476494 KIAA0586Q9BVV6 1533 aa12.08□□□□□ -0.48
CLDN4-205ENST00000476494 CUL7Q14999 1698 aa12.07□□□□□ -0.48
CLDN4-205ENST00000476494 UHRF1BP1LA0JNW5 1464 aa12.07□□□□□ -0.48
CLDN4-205ENST00000476494 KDM5BQ9UGL1 1544 aa12.03□□□□□ -0.48
CLDN4-205ENST00000476494 HSPA2P54652 639 aa12.02□□□□□ -0.49
CLDN4-205ENST00000476494 TNIKQ9UKE5 1360 aa12□□□□□ -0.49
CLDN4-205ENST00000476494 MAGI3Q5TCQ9 1506 aa12□□□□□ -0.49
CLDN4-205ENST00000476494 BIVM-ERCC5R4GMW8 1640 aa11.99□□□□□ -0.49
CLDN4-205ENST00000476494 UACAQ9BZF9 1416 aa11.98□□□□□ -0.49
CLDN4-205ENST00000476494 BCORL1Q5H9F3 1711 aa11.96□□□□□ -0.49
CLDN4-205ENST00000476494 MADDQ8WXG6 1647 aa11.95□□□□□ -0.5
CLDN4-205ENST00000476494 ARAP3Q8WWN8 1544 aa11.95□□□□□ -0.5
CLDN4-205ENST00000476494 ZCCHC11Q5TAX3 1644 aaKnown RBP11.94□□□□□ -0.5
CLDN4-205ENST00000476494 TTBK1Q5TCY1 1321 aaPredicted RBP11.94□□□□□ -0.5
CLDN4-205ENST00000476494 CD109Q6YHK3 1445 aa11.94□□□□□ -0.5
CLDN4-205ENST00000476494 WDR7Q9Y4E6 1490 aa11.92□□□□□ -0.5
CLDN4-205ENST00000476494 CFAP43Q8NDM7 1665 aa11.91□□□□□ -0.5
CLDN4-205ENST00000476494 CARMIL2Q6F5E8 1435 aa11.9□□□□□ -0.5
CLDN4-205ENST00000476494 IGF1RP08069 1367 aa11.9□□□□□ -0.5
CLDN4-205ENST00000476494 DISP1Q96F81 1524 aa11.88□□□□□ -0.51
CLDN4-205ENST00000476494 RIMS1Q86UR5 1692 aaKnown RBP11.87□□□□□ -0.51
CLDN4-205ENST00000476494 STRCQ7RTU9 1775 aa11.86□□□□□ -0.51
CLDN4-205ENST00000476494 RAPGEF3O95398 923 aa11.83□□□□□ -0.52
CLDN4-205ENST00000476494 YEATS2Q9ULM3 1422 aa11.82□□□□□ -0.52
CLDN4-205ENST00000476494 LTBP4Q8N2S1 1624 aa11.82□□□□□ -0.52
CLDN4-205ENST00000476494 KCNH8Q96L42 1107 aa11.81□□□□□ -0.52
CLDN4-205ENST00000476494 PHLDB1Q86UU1 1377 aa11.79□□□□□ -0.52
CLDN4-205ENST00000476494 IQGAP2Q13576 1575 aa11.79□□□□□ -0.52
CLDN4-205ENST00000476494 FRMPD1Q5SYB0 1578 aa11.79□□□□□ -0.52
CLDN4-205ENST00000476494 IQSEC2Q5JU85 1478 aa11.78□□□□□ -0.52
CLDN4-205ENST00000476494 DMRT2Q9Y5R5 561 aa11.78□□□□□ -0.52
CLDN4-205ENST00000476494 ARID4BQ4LE39 1312 aaPredicted RBP11.78□□□□□ -0.52
CLDN4-205ENST00000476494 SIGLEC1Q9BZZ2 1709 aa11.76□□□□□ -0.53
CLDN4-205ENST00000476494 PTPRTO14522 1441 aa11.75□□□□□ -0.53
CLDN4-205ENST00000476494 UGGT2Q9NYU1 1516 aa11.75□□□□□ -0.53
CLDN4-205ENST00000476494 CARMIL1Q5VZK9 1371 aa11.73□□□□□ -0.53
CLDN4-205ENST00000476494 PREX1Q8TCU6 1659 aa11.72□□□□□ -0.53
CLDN4-205ENST00000476494 TTC37Q6PGP7 1564 aa11.72□□□□□ -0.53
CLDN4-205ENST00000476494 PLPPR3Q6T4P5 718 aa11.72□□□□□ -0.53
CLDN4-205ENST00000476494 KIAA0556O60303 1618 aa11.71□□□□□ -0.53
CLDN4-205ENST00000476494 ARHGEF40Q8TER5 1519 aa11.71□□□□□ -0.53
CLDN4-205ENST00000476494 ABCA8O94911 1581 aa11.71□□□□□ -0.54
CLDN4-205ENST00000476494 MED1Q15648 1581 aaPredicted RBP11.71□□□□□ -0.54
CLDN4-205ENST00000476494 SETD1BQ9UPS6 1966 aaKnown RBP11.7□□□□□ -0.54
CLDN4-205ENST00000476494 NEO1Q92859 1461 aa11.7□□□□□ -0.54
CLDN4-205ENST00000476494 ABCA9Q8IUA7 1624 aa11.7□□□□□ -0.54
CLDN4-205ENST00000476494 KIF27Q86VH2 1401 aa11.69□□□□□ -0.54
CLDN4-205ENST00000476494 FER1L4A9Z1Z3 1794 aa11.67□□□□□ -0.54
CLDN4-205ENST00000476494 RICTORQ6R327 1708 aa11.66□□□□□ -0.54
CLDN4-205ENST00000476494 CEBPAP49715 358 aaPredicted RBP11.65□□□□□ -0.54
CLDN4-205ENST00000476494 POGZQ7Z3K3 1410 aa11.65□□□□□ -0.54
CLDN4-205ENST00000476494 FANCAO15360 1455 aa11.64□□□□□ -0.55
CLDN4-205ENST00000476494 FHOD3Q2V2M9 1422 aa11.64□□□□□ -0.55
CLDN4-205ENST00000476494 ARHGEF12Q9NZN5 1544 aa11.64□□□□□ -0.55
CLDN4-205ENST00000476494 UBAP1LF5GYI3 381 aa11.62□□□□□ -0.55
CLDN4-205ENST00000476494 ATP10BO94823 1461 aa11.62□□□□□ -0.55
CLDN4-205ENST00000476494 AKNAQ7Z591 1439 aa11.61□□□□□ -0.55
CLDN4-205ENST00000476494 HSPA1LP34931 641 aa11.61□□□□□ -0.55
CLDN4-205ENST00000476494 ZMYM4Q5VZL5 1548 aa11.6□□□□□ -0.55
CLDN4-205ENST00000476494 MLECQ14165 292 aa11.6□□□□□ -0.55
CLDN4-205ENST00000476494 UHRF1BP1Q6BDS2 1440 aa11.6□□□□□ -0.55
CLDN4-205ENST00000476494 DENND4BO75064 1496 aaPredicted RBP11.59□□□□□ -0.55
CLDN4-205ENST00000476494 NCOA1Q15788 1441 aa11.57□□□□□ -0.56
CLDN4-205ENST00000476494 RGS17Q9UGC6 210 aaPredicted RBP11.56□□□□□ -0.56
CLDN4-205ENST00000476494 MAGI2Q86UL8 1455 aa11.56□□□□□ -0.56
CLDN4-205ENST00000476494 ZNF335Q9H4Z2 1342 aaPredicted RBP11.56□□□□□ -0.56
CLDN4-205ENST00000476494 ZFYVE16Q7Z3T8 1539 aa11.55□□□□□ -0.56
CLDN4-205ENST00000476494 EFCAB5A4FU69 1503 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms