RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 IRX6P78412 446 aaPredicted RBP19.06■□□□□ 0.64
HDAC1-206ENST00000476391 SMARCA2P51531 1590 aa19.06■□□□□ 0.64
HDAC1-206ENST00000476391 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.05■□□□□ 0.64
HDAC1-206ENST00000476391 TIMELESSQ9UNS1 1208 aa19.04■□□□□ 0.64
HDAC1-206ENST00000476391 IPO9Q96P70 1041 aaKnown RBP19.03■□□□□ 0.64
HDAC1-206ENST00000476391 WASHC2AQ641Q2 1341 aa19.03■□□□□ 0.64
HDAC1-206ENST00000476391 C11orf95C9JLR9 678 aaPredicted RBP19.02■□□□□ 0.64
HDAC1-206ENST00000476391 RTN4Q9NQC3 1192 aaKnown RBP19.01■□□□□ 0.63
HDAC1-206ENST00000476391 ANP32AP39687 249 aaKnown RBP19.01■□□□□ 0.63
HDAC1-206ENST00000476391 HNRNPUQ00839 825 aaKnown RBP eCLIP19■□□□□ 0.638e-6■□□□□ 9.8
HDAC1-206ENST00000476391 ZBTB47Q9UFB7 747 aaPredicted RBP18.98■□□□□ 0.63
HDAC1-206ENST00000476391 CCNB3Q8WWL7 1395 aa18.97■□□□□ 0.63
HDAC1-206ENST00000476391 USP35Q9P2H5 1018 aa18.96■□□□□ 0.63
HDAC1-206ENST00000476391 RAB3GAP2Q9H2M9 1393 aa18.96■□□□□ 0.63
HDAC1-206ENST00000476391 RAPGEF2Q9Y4G8 1499 aa18.93■□□□□ 0.62
HDAC1-206ENST00000476391 B4GALNT3Q6L9W6 998 aa18.93■□□□□ 0.62
HDAC1-206ENST00000476391 WASHC2CQ9Y4E1 1318 aa18.93■□□□□ 0.62
HDAC1-206ENST00000476391 KANK4Q5T7N3 995 aaPredicted RBP18.91■□□□□ 0.62
HDAC1-206ENST00000476391 UNC13AQ9UPW8 1703 aa18.89■□□□□ 0.61
HDAC1-206ENST00000476391 SYNJ1O43426 1573 aa18.87■□□□□ 0.61
HDAC1-206ENST00000476391 ARAP1Q96P48 1450 aa18.86■□□□□ 0.61
HDAC1-206ENST00000476391 SETD5Q9C0A6 1442 aa18.85■□□□□ 0.61
HDAC1-206ENST00000476391 PKNOX2Q96KN3 472 aa18.84■□□□□ 0.61
HDAC1-206ENST00000476391 SIN3AQ96ST3 1273 aa18.81■□□□□ 0.6
HDAC1-206ENST00000476391 EIF5BO60841 1220 aaKnown RBP18.81■□□□□ 0.6
HDAC1-206ENST00000476391 HIRIP3Q9BW71 556 aaPredicted RBP18.81■□□□□ 0.6
HDAC1-206ENST00000476391 NEFMP07197 916 aa18.78■□□□□ 0.6
HDAC1-206ENST00000476391 NCAPD3P42695 1498 aa18.77■□□□□ 0.6
HDAC1-206ENST00000476391 SMARCA4P51532 1647 aa18.77■□□□□ 0.6
HDAC1-206ENST00000476391 RSPH6AQ9H0K4 717 aa18.76■□□□□ 0.59
HDAC1-206ENST00000476391 ERICH3Q5RHP9 1530 aa18.76■□□□□ 0.59
HDAC1-206ENST00000476391 ZBED9Q6R2W3 1325 aa18.75■□□□□ 0.59
HDAC1-206ENST00000476391 PPM1GO15355 546 aaPredicted RBP18.75■□□□□ 0.59
HDAC1-206ENST00000476391 RANGAP1P46060 587 aaPredicted RBP18.74■□□□□ 0.59
HDAC1-206ENST00000476391 PEG3Q9GZU2 1588 aa18.71■□□□□ 0.59
HDAC1-206ENST00000476391 BRPF3Q9ULD4 1205 aa18.7■□□□□ 0.58
HDAC1-206ENST00000476391 GSE1Q14687 1217 aa18.67■□□□□ 0.58
HDAC1-206ENST00000476391 GLIPR1L2Q4G1C9 344 aa18.66■□□□□ 0.58
HDAC1-206ENST00000476391 BICRAQ9NZM4 1560 aa18.66■□□□□ 0.58
HDAC1-206ENST00000476391 FHAD1B1AJZ9 1412 aa18.66■□□□□ 0.58
HDAC1-206ENST00000476391 RNF123Q5XPI4 1314 aa18.63■□□□□ 0.57
HDAC1-206ENST00000476391 LAS1LQ9Y4W2 734 aaKnown RBP18.63■□□□□ 0.57
HDAC1-206ENST00000476391 PRXQ9BXM0 1461 aa18.63■□□□□ 0.57
HDAC1-206ENST00000476391 TONSLQ96HA7 1378 aa18.63■□□□□ 0.57
HDAC1-206ENST00000476391 MAP3K1Q13233 1512 aa18.62■□□□□ 0.57
HDAC1-206ENST00000476391 SMG6Q86US8 1419 aaKnown RBP18.61■□□□□ 0.57
HDAC1-206ENST00000476391 FAM43AQ8N2R8 423 aa18.61■□□□□ 0.57
HDAC1-206ENST00000476391 NCOA2Q15596 1464 aa18.58■□□□□ 0.57
HDAC1-206ENST00000476391 CNTLNQ9NXG0 1405 aa18.56■□□□□ 0.56
HDAC1-206ENST00000476391 PABPN1Q86U42 306 aaKnown RBP eCLIP18.55■□□□□ 0.561e-6■□□□□ 10.2
HDAC1-206ENST00000476391 TCERG1O14776 1098 aaKnown RBP18.55■□□□□ 0.56
HDAC1-206ENST00000476391 CCDC184Q52MB2 194 aa18.54■□□□□ 0.56
HDAC1-206ENST00000476391 TIAM1Q13009 1591 aa18.54■□□□□ 0.56
HDAC1-206ENST00000476391 FAM9BQ8IZU0 186 aa18.53■□□□□ 0.56
HDAC1-206ENST00000476391 AKNAQ7Z591 1439 aa18.53■□□□□ 0.56
HDAC1-206ENST00000476391 NPM2Q86SE8 214 aaKnown RBP18.53■□□□□ 0.56
HDAC1-206ENST00000476391 PRKRIP1Q9H875 184 aaPredicted RBP18.52■□□□□ 0.55
HDAC1-206ENST00000476391 MRS2Q9HD23 443 aa18.51■□□□□ 0.55
HDAC1-206ENST00000476391 NUDCQ9Y266 331 aa18.51■□□□□ 0.55
HDAC1-206ENST00000476391 ARHGAP35Q9NRY4 1499 aa18.51■□□□□ 0.55
HDAC1-206ENST00000476391 DDRGK1Q96HY6 314 aa18.5■□□□□ 0.55
HDAC1-206ENST00000476391 TOP2BQ02880 1626 aa18.49■□□□□ 0.55
HDAC1-206ENST00000476391 MS4A1P11836 297 aa18.49■□□□□ 0.55
HDAC1-206ENST00000476391 FRAT1Q92837 279 aaPredicted RBP18.49■□□□□ 0.55
HDAC1-206ENST00000476391 PDE4AP27815 886 aa18.48■□□□□ 0.55
HDAC1-206ENST00000476391 BACH2Q9BYV9 841 aa18.48■□□□□ 0.55
HDAC1-206ENST00000476391 NFKBIBQ15653 356 aa18.47■□□□□ 0.55
HDAC1-206ENST00000476391 LRRC9Q6ZRR7 1453 aa18.46■□□□□ 0.55
HDAC1-206ENST00000476391 ZMYND15Q9H091 742 aa18.46■□□□□ 0.55
HDAC1-206ENST00000476391 PHLDB1Q86UU1 1377 aa18.45■□□□□ 0.54
HDAC1-206ENST00000476391 KDM5BQ9UGL1 1544 aa18.45■□□□□ 0.54
HDAC1-206ENST00000476391 SLC24A1O60721 1099 aa18.44■□□□□ 0.54
HDAC1-206ENST00000476391 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.43■□□□□ 0.54
HDAC1-206ENST00000476391 FAM50AQ14320 339 aaKnown RBP18.42■□□□□ 0.54
HDAC1-206ENST00000476391 HSPA5P11021 654 aaKnown RBP18.42■□□□□ 0.54
HDAC1-206ENST00000476391 BIVM-ERCC5R4GMW8 1640 aa18.41■□□□□ 0.54
HDAC1-206ENST00000476391 VSIG10Q8N0Z9 540 aa18.4■□□□□ 0.54
HDAC1-206ENST00000476391 UACAQ9BZF9 1416 aa18.39■□□□□ 0.54
HDAC1-206ENST00000476391 EIF4G2P78344 907 aaKnown RBP eCLIP18.38■□□□□ 0.53
HDAC1-206ENST00000476391 NCOA1Q15788 1441 aa18.37■□□□□ 0.53
HDAC1-206ENST00000476391 CCDC7Q96M83 1385 aa18.35■□□□□ 0.53
HDAC1-206ENST00000476391 PODXL2Q9NZ53 605 aa18.34■□□□□ 0.53
HDAC1-206ENST00000476391 CCDC18Q5T9S5 1454 aa18.34■□□□□ 0.53
HDAC1-206ENST00000476391 CFAP43Q8NDM7 1665 aa18.34■□□□□ 0.53
HDAC1-206ENST00000476391 ABCA5Q8WWZ7 1642 aa18.33■□□□□ 0.53
HDAC1-206ENST00000476391 RRP9O43818 475 aaKnown RBP18.32■□□□□ 0.52
HDAC1-206ENST00000476391 DCAF11Q8TEB1 546 aa18.32■□□□□ 0.52
HDAC1-206ENST00000476391 POLR1AO95602 1720 aaPredicted RBP18.3■□□□□ 0.52
HDAC1-206ENST00000476391 HFM1A2PYH4 1435 aa18.28■□□□□ 0.52
HDAC1-206ENST00000476391 HSP90AA2PQ14568 343 aaPredicted RBP18.28■□□□□ 0.52
HDAC1-206ENST00000476391 DAXXQ9UER7 740 aaPredicted RBP18.28■□□□□ 0.52
HDAC1-206ENST00000476391 KIF27Q86VH2 1401 aa18.26■□□□□ 0.51
HDAC1-206ENST00000476391 RRP1P56182 461 aaKnown RBP18.25■□□□□ 0.51
HDAC1-206ENST00000476391 PTPN23Q9H3S7 1636 aa18.25■□□□□ 0.51
HDAC1-206ENST00000476391 RRAGDQ9NQL2 400 aaPredicted RBP18.24■□□□□ 0.51
HDAC1-206ENST00000476391 EXOC6Q8TAG9 804 aa18.23■□□□□ 0.51
HDAC1-206ENST00000476391 HSP90AA1P07900 732 aaKnown RBP18.21■□□□□ 0.51
HDAC1-206ENST00000476391 FRAT2O75474 233 aaPredicted RBP18.2■□□□□ 0.5
HDAC1-206ENST00000476391 PLEKHG5O94827 1062 aa18.19■□□□□ 0.5
HDAC1-206ENST00000476391 L1TD1Q5T7N2 865 aaKnown RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms