RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ILDR2Q71H61 639 aa9.51□□□□□ -0.89
USP4-209ENST00000475873 GRIN2AQ12879 1464 aa9.51□□□□□ -0.89
USP4-209ENST00000475873 ABCA5Q8WWZ7 1642 aa9.49□□□□□ -0.89
USP4-209ENST00000475873 ADCY10Q96PN6 1610 aa9.47□□□□□ -0.89
USP4-209ENST00000475873 COL17A1Q9UMD9 1497 aaPredicted RBP9.46□□□□□ -0.9
USP4-209ENST00000475873 PPRC1Q5VV67 1664 aaKnown RBP9.45□□□□□ -0.9
USP4-209ENST00000475873 SOCS7O14512 581 aa9.45□□□□□ -0.9
USP4-209ENST00000475873 PRG4Q92954 1404 aaPredicted RBP9.45□□□□□ -0.9
USP4-209ENST00000475873 ADAMTS12P58397 1594 aa9.45□□□□□ -0.9
USP4-209ENST00000475873 ABCA10Q8WWZ4 1543 aa9.42□□□□□ -0.9
USP4-209ENST00000475873 JPH4Q96JJ6 628 aa9.37□□□□□ -0.91
USP4-209ENST00000475873 FHAD1B1AJZ9 1412 aa9.35□□□□□ -0.91
USP4-209ENST00000475873 NPM1P06748 294 aaKnown RBP eCLIP9.35□□□□□ -0.91
USP4-209ENST00000475873 RUSC2Q8N2Y8 1516 aa9.34□□□□□ -0.91
USP4-209ENST00000475873 DISP3Q9P2K9 1392 aa9.34□□□□□ -0.91
USP4-209ENST00000475873 GLI2P10070 1586 aa9.32□□□□□ -0.92
USP4-209ENST00000475873 TOP2BQ02880 1626 aa9.3□□□□□ -0.92
USP4-209ENST00000475873 ASXL2Q76L83 1435 aa9.29□□□□□ -0.92
USP4-209ENST00000475873 MAP3K4Q9Y6R4 1608 aa9.27□□□□□ -0.92
USP4-209ENST00000475873 ERICH3Q5RHP9 1530 aa9.26□□□□□ -0.93
USP4-209ENST00000475873 ABCC2Q92887 1545 aa9.26□□□□□ -0.93
USP4-209ENST00000475873 KIF21BO75037 1637 aa9.24□□□□□ -0.93
USP4-209ENST00000475873 PLB1Q6P1J6 1458 aa9.24□□□□□ -0.93
USP4-209ENST00000475873 SPATA31D1Q6ZQQ2 1576 aa9.24□□□□□ -0.93
USP4-209ENST00000475873 PTPRMP28827 1452 aa9.23□□□□□ -0.93
USP4-209ENST00000475873 EPRSP07814 1512 aaKnown RBP9.23□□□□□ -0.93
USP4-209ENST00000475873 PCF11O94913 1555 aaKnown RBP9.23□□□□□ -0.93
USP4-209ENST00000475873 WRNQ14191 1432 aaPredicted RBP eCLIP9.22□□□□□ -0.93
USP4-209ENST00000475873 CUL7Q14999 1698 aa9.22□□□□□ -0.93
USP4-209ENST00000475873 ADAMTSL3P82987 1691 aa9.21□□□□□ -0.93
USP4-209ENST00000475873 CERKQ8TCT0 537 aa9.21□□□□□ -0.94
USP4-209ENST00000475873 TEX14Q8IWB6 1497 aa9.2□□□□□ -0.94
USP4-209ENST00000475873 PTPRGP23470 1445 aa9.19□□□□□ -0.94
USP4-209ENST00000475873 KIAA0586Q9BVV6 1533 aa9.18□□□□□ -0.94
USP4-209ENST00000475873 HSPA2P54652 639 aa9.17□□□□□ -0.94
USP4-209ENST00000475873 UHRF1BP1LA0JNW5 1464 aa9.16□□□□□ -0.94
USP4-209ENST00000475873 TTBK1Q5TCY1 1321 aaPredicted RBP9.16□□□□□ -0.94
USP4-209ENST00000475873 BIVM-ERCC5R4GMW8 1640 aa9.16□□□□□ -0.94
USP4-209ENST00000475873 KDM5BQ9UGL1 1544 aa9.15□□□□□ -0.95
USP4-209ENST00000475873 MADDQ8WXG6 1647 aa9.13□□□□□ -0.95
USP4-209ENST00000475873 ZCCHC11Q5TAX3 1644 aaKnown RBP9.13□□□□□ -0.95
USP4-209ENST00000475873 TNIKQ9UKE5 1360 aa9.12□□□□□ -0.95
USP4-209ENST00000475873 MAGI3Q5TCQ9 1506 aa9.11□□□□□ -0.95
USP4-209ENST00000475873 UACAQ9BZF9 1416 aa9.11□□□□□ -0.95
USP4-209ENST00000475873 BCORL1Q5H9F3 1711 aa9.11□□□□□ -0.95
USP4-209ENST00000475873 WDR7Q9Y4E6 1490 aa9.08□□□□□ -0.96
USP4-209ENST00000475873 CD109Q6YHK3 1445 aa9.07□□□□□ -0.96
USP4-209ENST00000475873 DISP1Q96F81 1524 aa9.07□□□□□ -0.96
USP4-209ENST00000475873 RIMS1Q86UR5 1692 aaKnown RBP9.07□□□□□ -0.96
USP4-209ENST00000475873 ARAP3Q8WWN8 1544 aa9.06□□□□□ -0.96
USP4-209ENST00000475873 CFAP43Q8NDM7 1665 aa9.06□□□□□ -0.96
USP4-209ENST00000475873 IGF1RP08069 1367 aa9.05□□□□□ -0.96
USP4-209ENST00000475873 CARMIL2Q6F5E8 1435 aa9.04□□□□□ -0.96
USP4-209ENST00000475873 FRMPD1Q5SYB0 1578 aa9.03□□□□□ -0.96
USP4-209ENST00000475873 STRCQ7RTU9 1775 aa9.02□□□□□ -0.97
USP4-209ENST00000475873 SIGLEC1Q9BZZ2 1709 aa9.02□□□□□ -0.97
USP4-209ENST00000475873 RAPGEF3O95398 923 aa9.01□□□□□ -0.97
USP4-209ENST00000475873 IQGAP2Q13576 1575 aa9.01□□□□□ -0.97
USP4-209ENST00000475873 KCNH8Q96L42 1107 aa8.99□□□□□ -0.97
USP4-209ENST00000475873 LTBP4Q8N2S1 1624 aa8.98□□□□□ -0.97
USP4-209ENST00000475873 PLPPR3Q6T4P5 718 aa8.98□□□□□ -0.97
USP4-209ENST00000475873 ARID4BQ4LE39 1312 aaPredicted RBP8.97□□□□□ -0.97
USP4-209ENST00000475873 ARHGEF40Q8TER5 1519 aa8.96□□□□□ -0.97
USP4-209ENST00000475873 KIAA0556O60303 1618 aa8.96□□□□□ -0.98
USP4-209ENST00000475873 YEATS2Q9ULM3 1422 aa8.96□□□□□ -0.98
USP4-209ENST00000475873 UGGT2Q9NYU1 1516 aa8.95□□□□□ -0.98
USP4-209ENST00000475873 ABCA8O94911 1581 aa8.94□□□□□ -0.98
USP4-209ENST00000475873 CARMIL1Q5VZK9 1371 aa8.93□□□□□ -0.98
USP4-209ENST00000475873 MED1Q15648 1581 aaPredicted RBP8.93□□□□□ -0.98
USP4-209ENST00000475873 TTC37Q6PGP7 1564 aa8.93□□□□□ -0.98
USP4-209ENST00000475873 PREX1Q8TCU6 1659 aa8.91□□□□□ -0.98
USP4-209ENST00000475873 ABCA9Q8IUA7 1624 aa8.91□□□□□ -0.98
USP4-209ENST00000475873 IQSEC2Q5JU85 1478 aa8.9□□□□□ -0.98
USP4-209ENST00000475873 KIF27Q86VH2 1401 aa8.9□□□□□ -0.98
USP4-209ENST00000475873 FER1L4A9Z1Z3 1794 aa8.9□□□□□ -0.98
USP4-209ENST00000475873 NEO1Q92859 1461 aa8.89□□□□□ -0.99
USP4-209ENST00000475873 PTPRTO14522 1441 aa8.89□□□□□ -0.99
USP4-209ENST00000475873 PHLDB1Q86UU1 1377 aa8.89□□□□□ -0.99
USP4-209ENST00000475873 RICTORQ6R327 1708 aa8.89□□□□□ -0.99
USP4-209ENST00000475873 CEBPAP49715 358 aaPredicted RBP8.88□□□□□ -0.99
USP4-209ENST00000475873 DMRT2Q9Y5R5 561 aa8.87□□□□□ -0.99
USP4-209ENST00000475873 ARHGEF12Q9NZN5 1544 aa8.86□□□□□ -0.99
USP4-209ENST00000475873 FANCAO15360 1455 aa8.86□□□□□ -0.99
USP4-209ENST00000475873 ATP10BO94823 1461 aa8.85□□□□□ -0.99
USP4-209ENST00000475873 ARID3CA6NKF2 412 aa8.85□□□□□ -0.99
USP4-209ENST00000475873 MLECQ14165 292 aa8.85□□□□□ -0.99
USP4-209ENST00000475873 FHOD3Q2V2M9 1422 aa8.85□□□□□ -0.99
USP4-209ENST00000475873 ZMYM4Q5VZL5 1548 aa8.85□□□□□ -0.99
USP4-209ENST00000475873 POGZQ7Z3K3 1410 aa8.83□□□□□ -1
USP4-209ENST00000475873 AKNAQ7Z591 1439 aa8.83□□□□□ -1
USP4-209ENST00000475873 UBAP1LF5GYI3 381 aa8.83□□□□□ -1
USP4-209ENST00000475873 DENND4BO75064 1496 aaPredicted RBP8.83□□□□□ -1
USP4-209ENST00000475873 UHRF1BP1Q6BDS2 1440 aa8.82□□□□□ -1
USP4-209ENST00000475873 ZFYVE16Q7Z3T8 1539 aa8.82□□□□□ -1
USP4-209ENST00000475873 HSPA1LP34931 641 aa8.82□□□□□ -1
USP4-209ENST00000475873 ZNF335Q9H4Z2 1342 aaPredicted RBP8.81□□□□□ -1
USP4-209ENST00000475873 NCOA1Q15788 1441 aa8.81□□□□□ -1
USP4-209ENST00000475873 SETD1BQ9UPS6 1966 aaKnown RBP8.81□□□□□ -1
USP4-209ENST00000475873 HECW1Q76N89 1606 aa8.79□□□□□ -1
USP4-209ENST00000475873 EFCAB5A4FU69 1503 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms