RNA–Protein interactions for RNA: ENST00000475043.5

PDPN-204, Transcript of podoplanin, humanhuman

TSL 3 BASIC

Gene PDPN, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-204ENST00000475043 HOXD11P31277 338 aaPredicted RBP16.47■□□□□ 0.23
PDPN-204ENST00000475043 CLASP1Q7Z460 1538 aa16.42■□□□□ 0.22
PDPN-204ENST00000475043 CYB5RLQ6IPT4 315 aa16.4■□□□□ 0.22
PDPN-204ENST00000475043 ADAMTS12P58397 1594 aa16.39■□□□□ 0.21
PDPN-204ENST00000475043 RNF216Q9NWF9 866 aaPredicted RBP16.38■□□□□ 0.21
PDPN-204ENST00000475043 GRIN2AQ12879 1464 aa16.36■□□□□ 0.21
PDPN-204ENST00000475043 ERICH3Q5RHP9 1530 aa16.36■□□□□ 0.21
PDPN-204ENST00000475043 ARAP1Q96P48 1450 aa16.35■□□□□ 0.21
PDPN-204ENST00000475043 FHAD1B1AJZ9 1412 aa16.34■□□□□ 0.21
PDPN-204ENST00000475043 DCAF8L1A6NGE4 600 aa16.3■□□□□ 0.2
PDPN-204ENST00000475043 CEP170Q5SW79 1584 aa16.3■□□□□ 0.2
PDPN-204ENST00000475043 NCBP3Q53F19 620 aaKnown RBP16.28■□□□□ 0.2
PDPN-204ENST00000475043 NUP160Q12769 1436 aa16.27■□□□□ 0.19
PDPN-204ENST00000475043 KIF27Q86VH2 1401 aa16.26■□□□□ 0.19
PDPN-204ENST00000475043 ERCC6L2Q5T890 1561 aa16.21■□□□□ 0.18
PDPN-204ENST00000475043 CUL7Q14999 1698 aa16.21■□□□□ 0.18
PDPN-204ENST00000475043 SHROOM2Q13796 1616 aa16.19■□□□□ 0.18
PDPN-204ENST00000475043 IGF1RP08069 1367 aa16.19■□□□□ 0.18
PDPN-204ENST00000475043 TRHP20396 242 aaPredicted RBP16.18■□□□□ 0.18
PDPN-204ENST00000475043 RUSC2Q8N2Y8 1516 aa16.16■□□□□ 0.18
PDPN-204ENST00000475043 JPH4Q96JJ6 628 aa16.13■□□□□ 0.17
PDPN-204ENST00000475043 PRG4Q92954 1404 aaPredicted RBP16.12■□□□□ 0.17
PDPN-204ENST00000475043 CARMIL1Q5VZK9 1371 aa16.11■□□□□ 0.17
PDPN-204ENST00000475043 KIAA0586Q9BVV6 1533 aa16.08■□□□□ 0.16
PDPN-204ENST00000475043 NPM3O75607 178 aaKnown RBP16.04■□□□□ 0.16
PDPN-204ENST00000475043 RAPGEF2Q9Y4G8 1499 aa16■□□□□ 0.15
PDPN-204ENST00000475043 IQGAP2Q13576 1575 aa15.99■□□□□ 0.15
PDPN-204ENST00000475043 TTBK1Q5TCY1 1321 aaPredicted RBP15.94■□□□□ 0.14
PDPN-204ENST00000475043 RNF39Q9H2S5 420 aa15.94■□□□□ 0.14
PDPN-204ENST00000475043 CARMIL2Q6F5E8 1435 aa15.94■□□□□ 0.14
PDPN-204ENST00000475043 NPM1P06748 294 aaKnown RBP eCLIP15.93■□□□□ 0.14
PDPN-204ENST00000475043 CACNB1Q02641 598 aaPredicted RBP15.93■□□□□ 0.14
PDPN-204ENST00000475043 ADCY10Q96PN6 1610 aa15.93■□□□□ 0.14
PDPN-204ENST00000475043 CTTNBP2Q8WZ74 1663 aa15.92■□□□□ 0.14
PDPN-204ENST00000475043 PTPRGP23470 1445 aa15.9■□□□□ 0.14
PDPN-204ENST00000475043 TNIKQ9UKE5 1360 aa15.88■□□□□ 0.13
PDPN-204ENST00000475043 KIF13AQ9H1H9 1805 aa15.88■□□□□ 0.13
PDPN-204ENST00000475043 DISP1Q96F81 1524 aa15.86■□□□□ 0.13
PDPN-204ENST00000475043 UGGT2Q9NYU1 1516 aa15.86■□□□□ 0.13
PDPN-204ENST00000475043 PRXQ9BXM0 1461 aa15.85■□□□□ 0.13
PDPN-204ENST00000475043 MAPKBP1O60336 1514 aa15.84■□□□□ 0.13
PDPN-204ENST00000475043 KIAA0556O60303 1618 aa15.83■□□□□ 0.13
PDPN-204ENST00000475043 KCNA4P22459 653 aa15.83■□□□□ 0.12
PDPN-204ENST00000475043 CSRNP3Q8WYN3 585 aa15.81■□□□□ 0.12
PDPN-204ENST00000475043 FAM69CQ0P6D2 419 aa15.8■□□□□ 0.12
PDPN-204ENST00000475043 ABCC10Q5T3U5 1492 aa15.79■□□□□ 0.12
PDPN-204ENST00000475043 DIP2BQ9P265 1576 aa15.79■□□□□ 0.12
PDPN-204ENST00000475043 UACAQ9BZF9 1416 aa15.78■□□□□ 0.12
PDPN-204ENST00000475043 FAM9AQ8IZU1 332 aaPredicted RBP15.78■□□□□ 0.12
PDPN-204ENST00000475043 ABCC2Q92887 1545 aa15.78■□□□□ 0.12
PDPN-204ENST00000475043 GOLGA3Q08378 1498 aa15.78■□□□□ 0.12
PDPN-204ENST00000475043 EEA1Q15075 1411 aa15.77■□□□□ 0.12
PDPN-204ENST00000475043 UHRF1BP1LA0JNW5 1464 aa15.76■□□□□ 0.11
PDPN-204ENST00000475043 TSPOAP1O95153 1857 aa15.74■□□□□ 0.11
PDPN-204ENST00000475043 C1QBPQ07021 282 aaKnown RBP15.72■□□□□ 0.11
PDPN-204ENST00000475043 ZCCHC11Q5TAX3 1644 aaKnown RBP15.72■□□□□ 0.11
PDPN-204ENST00000475043 ASXL2Q76L83 1435 aa15.71■□□□□ 0.11
PDPN-204ENST00000475043 PLB1Q6P1J6 1458 aa15.7■□□□□ 0.1
PDPN-204ENST00000475043 KDM5BQ9UGL1 1544 aa15.69■□□□□ 0.1
PDPN-204ENST00000475043 P3H3Q8IVL6 736 aa15.69■□□□□ 0.1
PDPN-204ENST00000475043 RANGAP1P46060 587 aaPredicted RBP15.67■□□□□ 0.1
PDPN-204ENST00000475043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.67■□□□□ 0.1
PDPN-204ENST00000475043 KIF21BO75037 1637 aa15.66■□□□□ 0.1
PDPN-204ENST00000475043 ABCA8O94911 1581 aa15.66■□□□□ 0.1
PDPN-204ENST00000475043 SAMD9Q5K651 1589 aa15.64■□□□□ 0.09
PDPN-204ENST00000475043 GLI2P10070 1586 aa15.63■□□□□ 0.09
PDPN-204ENST00000475043 EHMT2Q96KQ7 1210 aa15.63■□□□□ 0.09
PDPN-204ENST00000475043 KDM6BO15054 1643 aa15.62■□□□□ 0.09
PDPN-204ENST00000475043 EPRSP07814 1512 aaKnown RBP15.61■□□□□ 0.09
PDPN-204ENST00000475043 WDR7Q9Y4E6 1490 aa15.59■□□□□ 0.09
PDPN-204ENST00000475043 ARID3CA6NKF2 412 aa15.59■□□□□ 0.09
PDPN-204ENST00000475043 PPRC1Q5VV67 1664 aaKnown RBP15.59■□□□□ 0.09
PDPN-204ENST00000475043 MAP3K4Q9Y6R4 1608 aa15.58■□□□□ 0.09
PDPN-204ENST00000475043 UBTFP17480 764 aaKnown RBP15.57■□□□□ 0.08
PDPN-204ENST00000475043 RAPGEF6Q8TEU7 1601 aa15.57■□□□□ 0.08
PDPN-204ENST00000475043 KCNH8Q96L42 1107 aa15.56■□□□□ 0.08
PDPN-204ENST00000475043 FHOD3Q2V2M9 1422 aa15.55■□□□□ 0.08
PDPN-204ENST00000475043 EFCAB5A4FU69 1503 aa15.53■□□□□ 0.08
PDPN-204ENST00000475043 ATP10BO94823 1461 aa15.52■□□□□ 0.08
PDPN-204ENST00000475043 CFAP43Q8NDM7 1665 aa15.52■□□□□ 0.08
PDPN-204ENST00000475043 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.52■□□□□ 0.08
PDPN-204ENST00000475043 HNRNPUL2Q1KMD3 747 aaKnown RBP15.52■□□□□ 0.08
PDPN-204ENST00000475043 TEX14Q8IWB6 1497 aa15.52■□□□□ 0.07
PDPN-204ENST00000475043 CD109Q6YHK3 1445 aa15.48■□□□□ 0.07
PDPN-204ENST00000475043 NUP153P49790 1475 aaKnown RBP15.47■□□□□ 0.07
PDPN-204ENST00000475043 MAGI3Q5TCQ9 1506 aa15.43■□□□□ 0.06
PDPN-204ENST00000475043 COL17A1Q9UMD9 1497 aaPredicted RBP15.43■□□□□ 0.06
PDPN-204ENST00000475043 ABCA9Q8IUA7 1624 aa15.42■□□□□ 0.06
PDPN-204ENST00000475043 ARHGAP35Q9NRY4 1499 aa15.41■□□□□ 0.06
PDPN-204ENST00000475043 ATP1B4Q9UN42 357 aaPredicted RBP15.41■□□□□ 0.06
PDPN-204ENST00000475043 PLEKHD1A6NEE1 506 aa15.39■□□□□ 0.05
PDPN-204ENST00000475043 FMN1Q68DA7 1419 aa15.39■□□□□ 0.05
PDPN-204ENST00000475043 CDK13Q14004 1512 aaKnown RBP15.38■□□□□ 0.05
PDPN-204ENST00000475043 HECW1Q76N89 1606 aa15.37■□□□□ 0.05
PDPN-204ENST00000475043 U3KPZ7 1027 aaPredicted RBP15.37■□□□□ 0.05
PDPN-204ENST00000475043 ARAP3Q8WWN8 1544 aa15.32■□□□□ 0.04
PDPN-204ENST00000475043 KDM4FA0A1W2PPD8 638 aa15.31■□□□□ 0.04
PDPN-204ENST00000475043 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.31■□□□□ 0.04
PDPN-204ENST00000475043 SLC4A2P04920 1241 aa15.3■□□□□ 0.04
PDPN-204ENST00000475043 TTC37Q6PGP7 1564 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms