RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ADAMTS12P58397 1594 aa15.37■□□□□ 0.05
USP54-211ENST00000474929 LMTK3Q96Q04 1460 aa15.37■□□□□ 0.05
USP54-211ENST00000474929 ABCA10Q8WWZ4 1543 aa15.36■□□□□ 0.05
USP54-211ENST00000474929 CUX1P39880 1505 aa15.34■□□□□ 0.05
USP54-211ENST00000474929 TSPOAP1O95153 1857 aa15.32■□□□□ 0.04
USP54-211ENST00000474929 PRG4Q92954 1404 aaPredicted RBP15.31■□□□□ 0.04
USP54-211ENST00000474929 FHAD1B1AJZ9 1412 aa15.28■□□□□ 0.04
USP54-211ENST00000474929 TOP2BQ02880 1626 aa15.28■□□□□ 0.04
USP54-211ENST00000474929 ADCY10Q96PN6 1610 aa15.27■□□□□ 0.03
USP54-211ENST00000474929 SOCS7O14512 581 aa15.22■□□□□ 0.03
USP54-211ENST00000474929 ERICH3Q5RHP9 1530 aa15.19■□□□□ 0.02
USP54-211ENST00000474929 GLI2P10070 1586 aa15.19■□□□□ 0.02
USP54-211ENST00000474929 JPH4Q96JJ6 628 aa15.18■□□□□ 0.02
USP54-211ENST00000474929 RUSC2Q8N2Y8 1516 aa15.17■□□□□ 0.02
USP54-211ENST00000474929 TEX14Q8IWB6 1497 aa15.16■□□□□ 0.02
USP54-211ENST00000474929 PPRC1Q5VV67 1664 aaKnown RBP15.15■□□□□ 0.02
USP54-211ENST00000474929 PLB1Q6P1J6 1458 aa15.14■□□□□ 0.01
USP54-211ENST00000474929 WRNQ14191 1432 aaPredicted RBP eCLIP15.13■□□□□ 0.01
USP54-211ENST00000474929 ABCC2Q92887 1545 aa15.07■□□□□ 0
USP54-211ENST00000474929 DISP3Q9P2K9 1392 aa15.06■□□□□ 0
USP54-211ENST00000474929 MAP3K4Q9Y6R4 1608 aa15.04■□□□□ -0
USP54-211ENST00000474929 ASXL2Q76L83 1435 aa15.04■□□□□ -0
USP54-211ENST00000474929 KIAA0586Q9BVV6 1533 aa15.03■□□□□ -0
USP54-211ENST00000474929 COL17A1Q9UMD9 1497 aaPredicted RBP15.02■□□□□ -0
USP54-211ENST00000474929 PTPRGP23470 1445 aa14.98□□□□□ -0.01
USP54-211ENST00000474929 BIVM-ERCC5R4GMW8 1640 aa14.97□□□□□ -0.01
USP54-211ENST00000474929 ILDR2Q71H61 639 aa14.97□□□□□ -0.01
USP54-211ENST00000474929 PCF11O94913 1555 aaKnown RBP14.97□□□□□ -0.01
USP54-211ENST00000474929 SPATA31D1Q6ZQQ2 1576 aa14.97□□□□□ -0.01
USP54-211ENST00000474929 EPRSP07814 1512 aaKnown RBP14.97□□□□□ -0.01
USP54-211ENST00000474929 UHRF1BP1LA0JNW5 1464 aa14.95□□□□□ -0.02
USP54-211ENST00000474929 CUL7Q14999 1698 aa14.95□□□□□ -0.02
USP54-211ENST00000474929 CARMIL2Q6F5E8 1435 aa14.92□□□□□ -0.02
USP54-211ENST00000474929 PTPRMP28827 1452 aa14.92□□□□□ -0.02
USP54-211ENST00000474929 TNIKQ9UKE5 1360 aa14.91□□□□□ -0.02
USP54-211ENST00000474929 KIF21BO75037 1637 aa14.91□□□□□ -0.02
USP54-211ENST00000474929 CERKQ8TCT0 537 aa14.87□□□□□ -0.03
USP54-211ENST00000474929 ADAMTSL3P82987 1691 aa14.87□□□□□ -0.03
USP54-211ENST00000474929 MAGI3Q5TCQ9 1506 aa14.87□□□□□ -0.03
USP54-211ENST00000474929 KDM5BQ9UGL1 1544 aa14.87□□□□□ -0.03
USP54-211ENST00000474929 UACAQ9BZF9 1416 aa14.86□□□□□ -0.03
USP54-211ENST00000474929 CFAP43Q8NDM7 1665 aa14.84□□□□□ -0.03
USP54-211ENST00000474929 WDR7Q9Y4E6 1490 aa14.82□□□□□ -0.04
USP54-211ENST00000474929 ZCCHC11Q5TAX3 1644 aaKnown RBP14.81□□□□□ -0.04
USP54-211ENST00000474929 CD109Q6YHK3 1445 aa14.77□□□□□ -0.04
USP54-211ENST00000474929 BCORL1Q5H9F3 1711 aa14.76□□□□□ -0.05
USP54-211ENST00000474929 ARAP3Q8WWN8 1544 aa14.76□□□□□ -0.05
USP54-211ENST00000474929 MADDQ8WXG6 1647 aa14.74□□□□□ -0.05
USP54-211ENST00000474929 TTBK1Q5TCY1 1321 aaPredicted RBP14.74□□□□□ -0.05
USP54-211ENST00000474929 IQGAP2Q13576 1575 aa14.74□□□□□ -0.05
USP54-211ENST00000474929 PHLDB1Q86UU1 1377 aa14.72□□□□□ -0.05
USP54-211ENST00000474929 RIMS1Q86UR5 1692 aaKnown RBP14.67□□□□□ -0.06
USP54-211ENST00000474929 DISP1Q96F81 1524 aa14.66□□□□□ -0.06
USP54-211ENST00000474929 KIF27Q86VH2 1401 aa14.65□□□□□ -0.06
USP54-211ENST00000474929 IQSEC2Q5JU85 1478 aa14.64□□□□□ -0.07
USP54-211ENST00000474929 DMRT2Q9Y5R5 561 aa14.64□□□□□ -0.07
USP54-211ENST00000474929 ARID4BQ4LE39 1312 aaPredicted RBP14.63□□□□□ -0.07
USP54-211ENST00000474929 IGF1RP08069 1367 aa14.62□□□□□ -0.07
USP54-211ENST00000474929 HSPA2P54652 639 aa14.62□□□□□ -0.07
USP54-211ENST00000474929 POGZQ7Z3K3 1410 aa14.62□□□□□ -0.07
USP54-211ENST00000474929 KIAA0556O60303 1618 aa14.61□□□□□ -0.07
USP54-211ENST00000474929 UGGT2Q9NYU1 1516 aa14.61□□□□□ -0.07
USP54-211ENST00000474929 ARHGEF40Q8TER5 1519 aa14.6□□□□□ -0.07
USP54-211ENST00000474929 NEO1Q92859 1461 aa14.58□□□□□ -0.08
USP54-211ENST00000474929 YEATS2Q9ULM3 1422 aa14.58□□□□□ -0.08
USP54-211ENST00000474929 FANCAO15360 1455 aa14.57□□□□□ -0.08
USP54-211ENST00000474929 PREX1Q8TCU6 1659 aa14.56□□□□□ -0.08
USP54-211ENST00000474929 CARMIL1Q5VZK9 1371 aa14.56□□□□□ -0.08
USP54-211ENST00000474929 TTC37Q6PGP7 1564 aa14.55□□□□□ -0.08
USP54-211ENST00000474929 ABCA9Q8IUA7 1624 aa14.53□□□□□ -0.08
USP54-211ENST00000474929 KCNH8Q96L42 1107 aa14.53□□□□□ -0.08
USP54-211ENST00000474929 FRMPD1Q5SYB0 1578 aa14.52□□□□□ -0.08
USP54-211ENST00000474929 ABCA8O94911 1581 aa14.5□□□□□ -0.09
USP54-211ENST00000474929 FER1L4A9Z1Z3 1794 aa14.5□□□□□ -0.09
USP54-211ENST00000474929 PTPRTO14522 1441 aa14.49□□□□□ -0.09
USP54-211ENST00000474929 AKNAQ7Z591 1439 aa14.49□□□□□ -0.09
USP54-211ENST00000474929 GOLGA3Q08378 1498 aa14.49□□□□□ -0.09
USP54-211ENST00000474929 EFCAB5A4FU69 1503 aa14.46□□□□□ -0.09
USP54-211ENST00000474929 RAPGEF3O95398 923 aa14.46□□□□□ -0.09
USP54-211ENST00000474929 STRCQ7RTU9 1775 aa14.45□□□□□ -0.1
USP54-211ENST00000474929 UHRF1BP1Q6BDS2 1440 aa14.45□□□□□ -0.1
USP54-211ENST00000474929 CFAP74Q9C0B2 1584 aa14.44□□□□□ -0.1
USP54-211ENST00000474929 FAM9AQ8IZU1 332 aaPredicted RBP14.44□□□□□ -0.1
USP54-211ENST00000474929 ZMYM4Q5VZL5 1548 aa14.43□□□□□ -0.1
USP54-211ENST00000474929 DENND4BO75064 1496 aaPredicted RBP14.43□□□□□ -0.1
USP54-211ENST00000474929 LTBP4Q8N2S1 1624 aa14.42□□□□□ -0.1
USP54-211ENST00000474929 MAGI2Q86UL8 1455 aa14.42□□□□□ -0.1
USP54-211ENST00000474929 FHOD3Q2V2M9 1422 aa14.41□□□□□ -0.1
USP54-211ENST00000474929 ZFYVE16Q7Z3T8 1539 aa14.41□□□□□ -0.1
USP54-211ENST00000474929 RICTORQ6R327 1708 aa14.41□□□□□ -0.1
USP54-211ENST00000474929 PLPPR3Q6T4P5 718 aa14.41□□□□□ -0.1
USP54-211ENST00000474929 MED1Q15648 1581 aaPredicted RBP14.4□□□□□ -0.1
USP54-211ENST00000474929 RAPGEF2Q9Y4G8 1499 aa14.39□□□□□ -0.11
USP54-211ENST00000474929 CHIC1Q5VXU3 224 aa14.39□□□□□ -0.11
USP54-211ENST00000474929 ARHGEF12Q9NZN5 1544 aa14.37□□□□□ -0.11
USP54-211ENST00000474929 SETD1BQ9UPS6 1966 aaKnown RBP14.36□□□□□ -0.11
USP54-211ENST00000474929 CTTNBP2Q8WZ74 1663 aa14.36□□□□□ -0.11
USP54-211ENST00000474929 UBAP1LF5GYI3 381 aa14.31□□□□□ -0.12
USP54-211ENST00000474929 PHF23Q9BUL5 403 aaPredicted RBP14.31□□□□□ -0.12
USP54-211ENST00000474929 ATP10BO94823 1461 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms