RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 RUSC2Q8N2Y8 1516 aa25.99■■□□□ 1.75
VARS-223ENST00000474643 IGF1RP08069 1367 aa25.97■■□□□ 1.75
VARS-223ENST00000474643 CARMIL1Q5VZK9 1371 aa25.88■■□□□ 1.73
VARS-223ENST00000474643 KIAA0586Q9BVV6 1533 aa25.88■■□□□ 1.73
VARS-223ENST00000474643 NPM1P06748 294 aaKnown RBP eCLIP25.85■■□□□ 1.73
VARS-223ENST00000474643 TTBK1Q5TCY1 1321 aaPredicted RBP25.77■■□□□ 1.72
VARS-223ENST00000474643 CARMIL2Q6F5E8 1435 aa25.73■■□□□ 1.71
VARS-223ENST00000474643 IQGAP2Q13576 1575 aa25.7■■□□□ 1.71
VARS-223ENST00000474643 RAPGEF2Q9Y4G8 1499 aa25.67■■□□□ 1.7
VARS-223ENST00000474643 PTPRGP23470 1445 aa25.67■■□□□ 1.7
VARS-223ENST00000474643 ADCY10Q96PN6 1610 aa25.66■■□□□ 1.7
VARS-223ENST00000474643 TNIKQ9UKE5 1360 aa25.63■■□□□ 1.69
VARS-223ENST00000474643 FAM69CQ0P6D2 419 aa25.62■■□□□ 1.69
VARS-223ENST00000474643 MAPKBP1O60336 1514 aa25.6■■□□□ 1.69
VARS-223ENST00000474643 KIF13AQ9H1H9 1805 aa25.6■■□□□ 1.69
VARS-223ENST00000474643 ABCC10Q5T3U5 1492 aa25.57■■□□□ 1.68
VARS-223ENST00000474643 AEBP2Q6ZN18 517 aaPredicted RBP25.53■■□□□ 1.68
VARS-223ENST00000474643 DIP2BQ9P265 1576 aa25.51■■□□□ 1.67
VARS-223ENST00000474643 UGGT2Q9NYU1 1516 aa25.48■■□□□ 1.67
VARS-223ENST00000474643 ABCC2Q92887 1545 aa25.47■■□□□ 1.67
VARS-223ENST00000474643 DISP1Q96F81 1524 aa25.47■■□□□ 1.67
VARS-223ENST00000474643 CTTNBP2Q8WZ74 1663 aa25.45■■□□□ 1.67
VARS-223ENST00000474643 UACAQ9BZF9 1416 aa25.45■■□□□ 1.66
VARS-223ENST00000474643 KIAA0556O60303 1618 aa25.44■■□□□ 1.66
VARS-223ENST00000474643 UHRF1BP1LA0JNW5 1464 aa25.4■■□□□ 1.66
VARS-223ENST00000474643 GOLGA3Q08378 1498 aa25.4■■□□□ 1.66
VARS-223ENST00000474643 PLB1Q6P1J6 1458 aa25.39■■□□□ 1.65
VARS-223ENST00000474643 TSPOAP1O95153 1857 aa25.38■■□□□ 1.65
VARS-223ENST00000474643 ASXL2Q76L83 1435 aa25.38■■□□□ 1.65
VARS-223ENST00000474643 FAM9AQ8IZU1 332 aaPredicted RBP25.38■■□□□ 1.65
VARS-223ENST00000474643 PRXQ9BXM0 1461 aa25.37■■□□□ 1.65
VARS-223ENST00000474643 KDM6BO15054 1643 aa25.32■■□□□ 1.64
VARS-223ENST00000474643 CSRNP3Q8WYN3 585 aa25.3■■□□□ 1.64
VARS-223ENST00000474643 KDM5BQ9UGL1 1544 aa25.28■■□□□ 1.64
VARS-223ENST00000474643 ZCCHC11Q5TAX3 1644 aaKnown RBP25.28■■□□□ 1.64
VARS-223ENST00000474643 EEA1Q15075 1411 aa25.24■■□□□ 1.63
VARS-223ENST00000474643 GLI2P10070 1586 aa25.23■■□□□ 1.63
VARS-223ENST00000474643 EPRSP07814 1512 aaKnown RBP25.21■■□□□ 1.63
VARS-223ENST00000474643 P3H3Q8IVL6 736 aa25.2■■□□□ 1.62
VARS-223ENST00000474643 WDR7Q9Y4E6 1490 aa25.18■■□□□ 1.62
VARS-223ENST00000474643 RANGAP1P46060 587 aaPredicted RBP25.16■■□□□ 1.62
VARS-223ENST00000474643 TEX14Q8IWB6 1497 aa25.15■■□□□ 1.62
VARS-223ENST00000474643 ABCA8O94911 1581 aa25.14■■□□□ 1.62
VARS-223ENST00000474643 ARID3CA6NKF2 412 aa25.11■■□□□ 1.61
VARS-223ENST00000474643 KCNH8Q96L42 1107 aa25.11■■□□□ 1.61
VARS-223ENST00000474643 MAP3K4Q9Y6R4 1608 aa25.11■■□□□ 1.61
VARS-223ENST00000474643 PPRC1Q5VV67 1664 aaKnown RBP25.09■■□□□ 1.61
VARS-223ENST00000474643 CHIC1Q5VXU3 224 aa25.06■■□□□ 1.6
VARS-223ENST00000474643 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.05■■□□□ 1.6
VARS-223ENST00000474643 HNRNPUL2Q1KMD3 747 aaKnown RBP25.05■■□□□ 1.6
VARS-223ENST00000474643 SAMD9Q5K651 1589 aa25.05■■□□□ 1.6
VARS-223ENST00000474643 CD109Q6YHK3 1445 aa25.02■■□□□ 1.6
VARS-223ENST00000474643 CFAP43Q8NDM7 1665 aa25■■□□□ 1.59
VARS-223ENST00000474643 EHMT2Q96KQ7 1210 aa24.99■■□□□ 1.59
VARS-223ENST00000474643 KIF21BO75037 1637 aa24.98■■□□□ 1.59
VARS-223ENST00000474643 RAPGEF6Q8TEU7 1601 aa24.97■■□□□ 1.59
VARS-223ENST00000474643 FHOD3Q2V2M9 1422 aa24.95■■□□□ 1.59
VARS-223ENST00000474643 ATP10BO94823 1461 aa24.95■■□□□ 1.58
VARS-223ENST00000474643 UBTFP17480 764 aaKnown RBP24.94■■□□□ 1.58
VARS-223ENST00000474643 MAGI3Q5TCQ9 1506 aa24.93■■□□□ 1.58
VARS-223ENST00000474643 EFCAB5A4FU69 1503 aa24.91■■□□□ 1.58
VARS-223ENST00000474643 COL17A1Q9UMD9 1497 aaPredicted RBP24.9■■□□□ 1.58
VARS-223ENST00000474643 KDM4FA0A1W2PPD8 638 aa24.89■■□□□ 1.58
VARS-223ENST00000474643 NUP153P49790 1475 aaKnown RBP24.84■■□□□ 1.57
VARS-223ENST00000474643 ADGRL1O94910 1474 aa24.82■■□□□ 1.56
VARS-223ENST00000474643 PLEKHD1A6NEE1 506 aa24.81■■□□□ 1.56
VARS-223ENST00000474643 ABCA9Q8IUA7 1624 aa24.8■■□□□ 1.56
VARS-223ENST00000474643 ATP1B4Q9UN42 357 aaPredicted RBP24.8■■□□□ 1.56
VARS-223ENST00000474643 PHLDB1Q86UU1 1377 aa24.75■■□□□ 1.55
VARS-223ENST00000474643 ARAP3Q8WWN8 1544 aa24.71■■□□□ 1.55
VARS-223ENST00000474643 FMN1Q68DA7 1419 aa24.71■■□□□ 1.55
VARS-223ENST00000474643 NEO1Q92859 1461 aa24.7■■□□□ 1.54
VARS-223ENST00000474643 HECW1Q76N89 1606 aa24.67■■□□□ 1.54
VARS-223ENST00000474643 CDK13Q14004 1512 aaKnown RBP24.66■■□□□ 1.54
VARS-223ENST00000474643 ARHGAP35Q9NRY4 1499 aa24.64■■□□□ 1.54
VARS-223ENST00000474643 RAPGEF3O95398 923 aa24.64■■□□□ 1.54
VARS-223ENST00000474643 CDK11AQ9UQ88 783 aaPredicted RBP24.64■■□□□ 1.54
VARS-223ENST00000474643 CFAP74Q9C0B2 1584 aa24.63■■□□□ 1.53
VARS-223ENST00000474643 FANCAO15360 1455 aa24.6■■□□□ 1.53
VARS-223ENST00000474643 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.59■■□□□ 1.53
VARS-223ENST00000474643 TTC37Q6PGP7 1564 aa24.57■■□□□ 1.52
VARS-223ENST00000474643 ARID4BQ4LE39 1312 aaPredicted RBP24.57■■□□□ 1.52
VARS-223ENST00000474643 DENND4BO75064 1496 aaPredicted RBP24.56■■□□□ 1.52
VARS-223ENST00000474643 AKNAQ7Z591 1439 aa24.55■■□□□ 1.52
VARS-223ENST00000474643 CLIP1P30622 1438 aa24.52■■□□□ 1.52
VARS-223ENST00000474643 FRMPD1Q5SYB0 1578 aa24.5■■□□□ 1.51
VARS-223ENST00000474643 KIF14Q15058 1648 aa24.49■■□□□ 1.51
VARS-223ENST00000474643 ARHGEF40Q8TER5 1519 aa24.45■■□□□ 1.5
VARS-223ENST00000474643 PLCH2O75038 1416 aa24.44■■□□□ 1.5
VARS-223ENST00000474643 TROQ12816 1431 aaPredicted RBP24.44■■□□□ 1.5
VARS-223ENST00000474643 RICTORQ6R327 1708 aa24.44■■□□□ 1.5
VARS-223ENST00000474643 MYO5CQ9NQX4 1742 aa24.44■■□□□ 1.5
VARS-223ENST00000474643 EFCAB2Q5VUJ9 269 aa24.44■■□□□ 1.5
VARS-223ENST00000474643 CCDC18Q5T9S5 1454 aa24.43■■□□□ 1.5
VARS-223ENST00000474643 PCF11O94913 1555 aaKnown RBP24.42■■□□□ 1.5
VARS-223ENST00000474643 HECW2Q9P2P5 1572 aa24.42■■□□□ 1.5
VARS-223ENST00000474643 SCAPERQ9BY12 1400 aa24.41■■□□□ 1.5
VARS-223ENST00000474643 ARHGAP5Q13017 1502 aa24.4■■□□□ 1.5
VARS-223ENST00000474643 CASKIN1Q8WXD9 1431 aa24.4■■□□□ 1.5
VARS-223ENST00000474643 MYT1LQ9UL68 1186 aa24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms