RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 APLP2Q06481 763 aa15.04■□□□□ -0
USP39-214ENST00000474572 THOC2Q8NI27 1593 aaKnown RBP15.03■□□□□ -0
USP39-214ENST00000474572 IFT140Q96RY7 1462 aa15.03■□□□□ -0
USP39-214ENST00000474572 AQRO60306 1485 aaKnown RBP eCLIP15.02■□□□□ -02e-6■■■■□ 22.7
USP39-214ENST00000474572 FHAD1B1AJZ9 1412 aa15.02■□□□□ -0
USP39-214ENST00000474572 RANGAP1P46060 587 aaPredicted RBP15.02■□□□□ -0
USP39-214ENST00000474572 PCF11O94913 1555 aaKnown RBP15.02□□□□□ -0.01
USP39-214ENST00000474572 RRBP1Q9P2E9 1410 aaKnown RBP15□□□□□ -0.01
USP39-214ENST00000474572 TTBK1Q5TCY1 1321 aaPredicted RBP14.99□□□□□ -0.01
USP39-214ENST00000474572 FYCO1Q9BQS8 1478 aa14.98□□□□□ -0.01
USP39-214ENST00000474572 GRIN2BQ13224 1484 aa14.97□□□□□ -0.01
USP39-214ENST00000474572 KANK4Q5T7N3 995 aaPredicted RBP14.95□□□□□ -0.02
USP39-214ENST00000474572 CASKIN1Q8WXD9 1431 aa14.94□□□□□ -0.02
USP39-214ENST00000474572 SNAPC4Q5SXM2 1469 aa14.94□□□□□ -0.02
USP39-214ENST00000474572 FHOD3Q2V2M9 1422 aa14.93□□□□□ -0.02
USP39-214ENST00000474572 LRRC9Q6ZRR7 1453 aa14.93□□□□□ -0.02
USP39-214ENST00000474572 EIF4G3O43432 1585 aaKnown RBP14.93□□□□□ -0.02
USP39-214ENST00000474572 FMN1Q68DA7 1419 aa14.92□□□□□ -0.02
USP39-214ENST00000474572 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.91□□□□□ -0.02
USP39-214ENST00000474572 ZNF608Q9ULD9 1512 aaPredicted RBP14.91□□□□□ -0.02
USP39-214ENST00000474572 IQGAP2Q13576 1575 aa14.9□□□□□ -0.02
USP39-214ENST00000474572 LRRIQ1Q96JM4 1722 aa14.89□□□□□ -0.03
USP39-214ENST00000474572 ERCC6Q03468 1493 aa14.89□□□□□ -0.03
USP39-214ENST00000474572 CCER1Q8TC90 406 aaPredicted RBP14.88□□□□□ -0.03
USP39-214ENST00000474572 UGGT2Q9NYU1 1516 aa14.87□□□□□ -0.03
USP39-214ENST00000474572 CCNB3Q8WWL7 1395 aa14.85□□□□□ -0.03
USP39-214ENST00000474572 MAGI1Q96QZ7 1491 aaPredicted RBP14.83□□□□□ -0.03
USP39-214ENST00000474572 GRIN2AQ12879 1464 aa14.81□□□□□ -0.04
USP39-214ENST00000474572 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
USP39-214ENST00000474572 KIAA0586Q9BVV6 1533 aa14.8□□□□□ -0.04
USP39-214ENST00000474572 HECW1Q76N89 1606 aa14.79□□□□□ -0.04
USP39-214ENST00000474572 P3H3Q8IVL6 736 aa14.79□□□□□ -0.04
USP39-214ENST00000474572 PHLDB1Q86UU1 1377 aa14.78□□□□□ -0.04
USP39-214ENST00000474572 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.78□□□□□ -0.041e-6■□□□□ 11
USP39-214ENST00000474572 KIAA0556O60303 1618 aa14.77□□□□□ -0.04
USP39-214ENST00000474572 EHBP1L1Q8N3D4 1523 aa14.77□□□□□ -0.04
USP39-214ENST00000474572 CCDC18Q5T9S5 1454 aa14.76□□□□□ -0.05
USP39-214ENST00000474572 SYNJ2O15056 1496 aa14.76□□□□□ -0.05
USP39-214ENST00000474572 ARHGEF11O15085 1522 aa14.75□□□□□ -0.05
USP39-214ENST00000474572 SUPT6HQ7KZ85 1726 aaKnown RBP14.74□□□□□ -0.05
USP39-214ENST00000474572 CEP170Q5SW79 1584 aa14.73□□□□□ -0.05
USP39-214ENST00000474572 CLSPNQ9HAW4 1339 aa14.73□□□□□ -0.05
USP39-214ENST00000474572 DISP1Q96F81 1524 aa14.73□□□□□ -0.05
USP39-214ENST00000474572 NUP160Q12769 1436 aa14.71□□□□□ -0.05
USP39-214ENST00000474572 DHX57Q6P158 1386 aaKnown RBP14.71□□□□□ -0.06
USP39-214ENST00000474572 MAGI3Q5TCQ9 1506 aa14.7□□□□□ -0.06
USP39-214ENST00000474572 FGD6Q6ZV73 1430 aa14.67□□□□□ -0.06
USP39-214ENST00000474572 EPRSP07814 1512 aaKnown RBP14.67□□□□□ -0.06
USP39-214ENST00000474572 NCOA2Q15596 1464 aa14.66□□□□□ -0.06
USP39-214ENST00000474572 RAPGEF6Q8TEU7 1601 aa14.66□□□□□ -0.06
USP39-214ENST00000474572 MTUS2Q5JR59 1369 aa14.65□□□□□ -0.06
USP39-214ENST00000474572 MYOM3Q5VTT5 1437 aa14.64□□□□□ -0.07
USP39-214ENST00000474572 TCOF1Q13428 1488 aaKnown RBP14.63□□□□□ -0.07
USP39-214ENST00000474572 SETD5Q9C0A6 1442 aa14.62□□□□□ -0.07
USP39-214ENST00000474572 CDK13Q14004 1512 aaKnown RBP14.61□□□□□ -0.07
USP39-214ENST00000474572 ATP1B4Q9UN42 357 aaPredicted RBP14.61□□□□□ -0.07
USP39-214ENST00000474572 PTPN23Q9H3S7 1636 aa14.61□□□□□ -0.07
USP39-214ENST00000474572 RAB3GAP2Q9H2M9 1393 aa14.6□□□□□ -0.07
USP39-214ENST00000474572 NUP153P49790 1475 aaKnown RBP14.6□□□□□ -0.07
USP39-214ENST00000474572 MAPKBP1O60336 1514 aa14.58□□□□□ -0.08
USP39-214ENST00000474572 ADCY10Q96PN6 1610 aa14.56□□□□□ -0.08
USP39-214ENST00000474572 CHD1O14646 1710 aa14.56□□□□□ -0.08
USP39-214ENST00000474572 CHMP7Q8WUX9 453 aaPredicted RBP14.56□□□□□ -0.08
USP39-214ENST00000474572 MIA2Q96PC5 1412 aa14.56□□□□□ -0.08
USP39-214ENST00000474572 CARMIL2Q6F5E8 1435 aa14.54□□□□□ -0.08
USP39-214ENST00000474572 ABCA8O94911 1581 aa14.54□□□□□ -0.08
USP39-214ENST00000474572 GCC2Q8IWJ2 1684 aa14.54□□□□□ -0.08
USP39-214ENST00000474572 HFM1A2PYH4 1435 aa14.53□□□□□ -0.08
USP39-214ENST00000474572 FAM50AQ14320 339 aaKnown RBP14.53□□□□□ -0.08
USP39-214ENST00000474572 SHROOM2Q13796 1616 aa14.52□□□□□ -0.08
USP39-214ENST00000474572 PTPRKQ15262 1439 aa14.52□□□□□ -0.08
USP39-214ENST00000474572 AKNAQ7Z591 1439 aa14.52□□□□□ -0.08
USP39-214ENST00000474572 ITGAEP38570 1179 aa14.5□□□□□ -0.09
USP39-214ENST00000474572 ITSN2Q9NZM3 1697 aa14.49□□□□□ -0.09
USP39-214ENST00000474572 PLB1Q6P1J6 1458 aa14.49□□□□□ -0.09
USP39-214ENST00000474572 ZNF316A6NFI3 1004 aaPredicted RBP14.48□□□□□ -0.09
USP39-214ENST00000474572 JPH4Q96JJ6 628 aa14.48□□□□□ -0.09
USP39-214ENST00000474572 TROQ12816 1431 aaPredicted RBP14.48□□□□□ -0.09
USP39-214ENST00000474572 NAIPQ13075 1403 aa14.47□□□□□ -0.09
USP39-214ENST00000474572 DNMT1P26358 1616 aaKnown RBP14.46□□□□□ -0.09
USP39-214ENST00000474572 UACAQ9BZF9 1416 aa14.43□□□□□ -0.1
USP39-214ENST00000474572 KIF14Q15058 1648 aa14.42□□□□□ -0.1
USP39-214ENST00000474572 FBLN2P98095 1184 aa14.42□□□□□ -0.1
USP39-214ENST00000474572 CDK11AQ9UQ88 783 aaPredicted RBP14.41□□□□□ -0.1
USP39-214ENST00000474572 CLASP1Q7Z460 1538 aa14.41□□□□□ -0.1
USP39-214ENST00000474572 CROCC2H7BZ55 1655 aa14.4□□□□□ -0.1
USP39-214ENST00000474572 PRG4Q92954 1404 aaPredicted RBP14.4□□□□□ -0.1
USP39-214ENST00000474572 DIEXFQ68CQ4 756 aaKnown RBP14.39□□□□□ -0.11
USP39-214ENST00000474572 ATP10BO94823 1461 aa14.38□□□□□ -0.11
USP39-214ENST00000474572 CDC42BPAQ5VT25 1732 aa14.38□□□□□ -0.11
USP39-214ENST00000474572 ROCK1Q13464 1354 aa14.38□□□□□ -0.11
USP39-214ENST00000474572 ADGBQ8N7X0 1667 aa14.38□□□□□ -0.11
USP39-214ENST00000474572 DAPK1P53355 1430 aa14.38□□□□□ -0.11
USP39-214ENST00000474572 ABCC10Q5T3U5 1492 aa14.38□□□□□ -0.11
USP39-214ENST00000474572 GPATCH8Q9UKJ3 1502 aaKnown RBP14.37□□□□□ -0.11
USP39-214ENST00000474572 TIMELESSQ9UNS1 1208 aa14.36□□□□□ -0.11
USP39-214ENST00000474572 KDM6BO15054 1643 aa14.36□□□□□ -0.11
USP39-214ENST00000474572 ABCC5O15440 1437 aa14.35□□□□□ -0.11
USP39-214ENST00000474572 CAMSAP2Q08AD1 1489 aa14.35□□□□□ -0.11
USP39-214ENST00000474572 PTPRGP23470 1445 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms