RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 PRG4Q92954 1404 aaPredicted RBP30.72■■■□□ 2.51
UPF3A-203ENST00000474056 JPH4Q96JJ6 628 aa30.7■■■□□ 2.51
UPF3A-203ENST00000474056 KIAA0586Q9BVV6 1533 aa30.68■■■□□ 2.5
UPF3A-203ENST00000474056 TRHP20396 242 aaPredicted RBP30.57■■■□□ 2.48
UPF3A-203ENST00000474056 RAPGEF2Q9Y4G8 1499 aa30.55■■■□□ 2.48
UPF3A-203ENST00000474056 IQGAP2Q13576 1575 aa30.51■■■□□ 2.47
UPF3A-203ENST00000474056 CTTNBP2Q8WZ74 1663 aa30.39■■■□□ 2.46
UPF3A-203ENST00000474056 ADCY10Q96PN6 1610 aa30.36■■■□□ 2.45
UPF3A-203ENST00000474056 PRXQ9BXM0 1461 aa30.36■■■□□ 2.45
UPF3A-203ENST00000474056 CARMIL2Q6F5E8 1435 aa30.33■■■□□ 2.45
UPF3A-203ENST00000474056 DISP1Q96F81 1524 aa30.31■■■□□ 2.44
UPF3A-203ENST00000474056 UGGT2Q9NYU1 1516 aa30.31■■■□□ 2.44
UPF3A-203ENST00000474056 TNIKQ9UKE5 1360 aa30.28■■■□□ 2.44
UPF3A-203ENST00000474056 PTPRGP23470 1445 aa30.27■■■□□ 2.44
UPF3A-203ENST00000474056 KIF13AQ9H1H9 1805 aa30.26■■■□□ 2.44
UPF3A-203ENST00000474056 KIAA0556O60303 1618 aa30.25■■■□□ 2.43
UPF3A-203ENST00000474056 TTBK1Q5TCY1 1321 aaPredicted RBP30.23■■■□□ 2.43
UPF3A-203ENST00000474056 CSRNP3Q8WYN3 585 aa30.2■■■□□ 2.43
UPF3A-203ENST00000474056 MAPKBP1O60336 1514 aa30.19■■■□□ 2.42
UPF3A-203ENST00000474056 EEA1Q15075 1411 aa30.19■■■□□ 2.42
UPF3A-203ENST00000474056 NPM1P06748 294 aaKnown RBP eCLIP30.18■■■□□ 2.42
UPF3A-203ENST00000474056 CHIC1Q5VXU3 224 aa30.11■■■□□ 2.41
UPF3A-203ENST00000474056 ABCC10Q5T3U5 1492 aa30.09■■■□□ 2.41
UPF3A-203ENST00000474056 ABCC2Q92887 1545 aa30.09■■■□□ 2.41
UPF3A-203ENST00000474056 DIP2BQ9P265 1576 aa30.08■■■□□ 2.41
UPF3A-203ENST00000474056 UACAQ9BZF9 1416 aa30.08■■■□□ 2.41
UPF3A-203ENST00000474056 UHRF1BP1LA0JNW5 1464 aa30.07■■■□□ 2.4
UPF3A-203ENST00000474056 GOLGA3Q08378 1498 aa30.07■■■□□ 2.4
UPF3A-203ENST00000474056 FAM9AQ8IZU1 332 aaPredicted RBP30.06■■■□□ 2.4
UPF3A-203ENST00000474056 FAM69CQ0P6D2 419 aa30■■■□□ 2.39
UPF3A-203ENST00000474056 KIF21BO75037 1637 aa29.99■■■□□ 2.39
UPF3A-203ENST00000474056 ZCCHC11Q5TAX3 1644 aaKnown RBP29.96■■■□□ 2.39
UPF3A-203ENST00000474056 KDM5BQ9UGL1 1544 aa29.96■■■□□ 2.39
UPF3A-203ENST00000474056 PLB1Q6P1J6 1458 aa29.94■■■□□ 2.38
UPF3A-203ENST00000474056 ASXL2Q76L83 1435 aa29.93■■■□□ 2.38
UPF3A-203ENST00000474056 SAMD9Q5K651 1589 aa29.93■■■□□ 2.38
UPF3A-203ENST00000474056 TSPOAP1O95153 1857 aa29.93■■■□□ 2.38
UPF3A-203ENST00000474056 ABCA8O94911 1581 aa29.92■■■□□ 2.38
UPF3A-203ENST00000474056 P3H3Q8IVL6 736 aa29.86■■■□□ 2.37
UPF3A-203ENST00000474056 GLI2P10070 1586 aa29.81■■■□□ 2.36
UPF3A-203ENST00000474056 EPRSP07814 1512 aaKnown RBP29.77■■■□□ 2.36
UPF3A-203ENST00000474056 RANGAP1P46060 587 aaPredicted RBP29.77■■■□□ 2.36
UPF3A-203ENST00000474056 PPRC1Q5VV67 1664 aaKnown RBP29.76■■■□□ 2.36
UPF3A-203ENST00000474056 EHMT2Q96KQ7 1210 aa29.74■■■□□ 2.35
UPF3A-203ENST00000474056 RAPGEF6Q8TEU7 1601 aa29.72■■■□□ 2.35
UPF3A-203ENST00000474056 WDR7Q9Y4E6 1490 aa29.72■■■□□ 2.35
UPF3A-203ENST00000474056 FHOD3Q2V2M9 1422 aa29.71■■■□□ 2.35
UPF3A-203ENST00000474056 MAP3K4Q9Y6R4 1608 aa29.71■■■□□ 2.35
UPF3A-203ENST00000474056 EFCAB5A4FU69 1503 aa29.69■■■□□ 2.34
UPF3A-203ENST00000474056 KDM6BO15054 1643 aa29.68■■■□□ 2.34
UPF3A-203ENST00000474056 UBTFP17480 764 aaKnown RBP29.64■■■□□ 2.34
UPF3A-203ENST00000474056 ATP10BO94823 1461 aa29.63■■■□□ 2.33
UPF3A-203ENST00000474056 ARID3CA6NKF2 412 aa29.63■■■□□ 2.33
UPF3A-203ENST00000474056 CFAP43Q8NDM7 1665 aa29.58■■■□□ 2.33
UPF3A-203ENST00000474056 NUP153P49790 1475 aaKnown RBP29.56■■■□□ 2.32
UPF3A-203ENST00000474056 KCNH8Q96L42 1107 aa29.54■■■□□ 2.32
UPF3A-203ENST00000474056 TEX14Q8IWB6 1497 aa29.52■■■□□ 2.32
UPF3A-203ENST00000474056 ARHGAP35Q9NRY4 1499 aa29.5■■■□□ 2.31
UPF3A-203ENST00000474056 CD109Q6YHK3 1445 aa29.47■■■□□ 2.31
UPF3A-203ENST00000474056 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.44■■■□□ 2.3
UPF3A-203ENST00000474056 HNRNPUL2Q1KMD3 747 aaKnown RBP29.44■■■□□ 2.3
UPF3A-203ENST00000474056 MAGI3Q5TCQ9 1506 aa29.44■■■□□ 2.3
UPF3A-203ENST00000474056 COL17A1Q9UMD9 1497 aaPredicted RBP29.43■■■□□ 2.3
UPF3A-203ENST00000474056 ABCA9Q8IUA7 1624 aa29.43■■■□□ 2.3
UPF3A-203ENST00000474056 FMN1Q68DA7 1419 aa29.37■■■□□ 2.29
UPF3A-203ENST00000474056 CDK13Q14004 1512 aaKnown RBP29.35■■■□□ 2.29
UPF3A-203ENST00000474056 HECW1Q76N89 1606 aa29.35■■■□□ 2.29
UPF3A-203ENST00000474056 LRRIQ1Q96JM4 1722 aa29.29■■■□□ 2.28
UPF3A-203ENST00000474056 PLEKHD1A6NEE1 506 aa29.28■■■□□ 2.28
UPF3A-203ENST00000474056 AEBP2Q6ZN18 517 aaPredicted RBP29.26■■■□□ 2.27
UPF3A-203ENST00000474056 ATP1B4Q9UN42 357 aaPredicted RBP29.24■■■□□ 2.27
UPF3A-203ENST00000474056 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.22■■■□□ 2.27
UPF3A-203ENST00000474056 TTC37Q6PGP7 1564 aa29.22■■■□□ 2.27
UPF3A-203ENST00000474056 PCF11O94913 1555 aaKnown RBP29.21■■■□□ 2.27
UPF3A-203ENST00000474056 ARAP3Q8WWN8 1544 aa29.19■■■□□ 2.26
UPF3A-203ENST00000474056 CLIP1P30622 1438 aa29.18■■■□□ 2.26
UPF3A-203ENST00000474056 NEO1Q92859 1461 aa29.17■■■□□ 2.26
UPF3A-203ENST00000474056 PHLDB1Q86UU1 1377 aa29.13■■■□□ 2.25
UPF3A-203ENST00000474056 CASKIN1Q8WXD9 1431 aa29.12■■■□□ 2.25
UPF3A-203ENST00000474056 KIF14Q15058 1648 aa29.1■■■□□ 2.25
UPF3A-203ENST00000474056 KDM4FA0A1W2PPD8 638 aa29.1■■■□□ 2.25
UPF3A-203ENST00000474056 CFAP74Q9C0B2 1584 aa29.09■■■□□ 2.25
UPF3A-203ENST00000474056 MYO5CQ9NQX4 1742 aa29.06■■■□□ 2.24
UPF3A-203ENST00000474056 FRMPD1Q5SYB0 1578 aa29.06■■■□□ 2.24
UPF3A-203ENST00000474056 CDK11AQ9UQ88 783 aaPredicted RBP29.06■■■□□ 2.24
UPF3A-203ENST00000474056 FANCAO15360 1455 aa29.05■■■□□ 2.24
UPF3A-203ENST00000474056 CCDC18Q5T9S5 1454 aa29.05■■■□□ 2.24
UPF3A-203ENST00000474056 FYCO1Q9BQS8 1478 aa29.05■■■□□ 2.24
UPF3A-203ENST00000474056 TROQ12816 1431 aaPredicted RBP29.05■■■□□ 2.24
UPF3A-203ENST00000474056 ADGRL1O94910 1474 aa29.03■■■□□ 2.24
UPF3A-203ENST00000474056 AKNAQ7Z591 1439 aa29.03■■■□□ 2.24
UPF3A-203ENST00000474056 RAPGEF3O95398 923 aa29.02■■■□□ 2.24
UPF3A-203ENST00000474056 RICTORQ6R327 1708 aa29.02■■■□□ 2.24
UPF3A-203ENST00000474056 PLCH2O75038 1416 aa28.99■■■□□ 2.23
UPF3A-203ENST00000474056 CEP162Q5TB80 1403 aa28.99■■■□□ 2.23
UPF3A-203ENST00000474056 DENND4BO75064 1496 aaPredicted RBP28.96■■■□□ 2.23
UPF3A-203ENST00000474056 CDC42BPBQ9Y5S2 1711 aa28.91■■■□□ 2.22
UPF3A-203ENST00000474056 LOC105371045A0A1W2PR82 267 aa28.89■■■□□ 2.22
UPF3A-203ENST00000474056 ARHGAP5Q13017 1502 aa28.87■■■□□ 2.21
UPF3A-203ENST00000474056 ARHGEF40Q8TER5 1519 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms